Prupe.6G244500_v2.0.a1

Nodulin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
24209221 .. 24210911
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G244500.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 1632 bp
ATGGCTGGTTGTGGTACAATCCATTTCTTTGGGATTTATTCCAAAGAGCTCAAAGTCACATTTGGTTATGACCAAGAAACCCTCAATTTGTTGAGCTTTTCCAAAGAACTTGTGGTCAACATTGGCATTTATGCAGGCTTAATTGCAGAGGTTACACCAACATGGTTTGTGCTCCTCCTTGGTGCAGCCATGAACTTCACTGGCTACTTCATGATATGGCTAGCAGTTACAGGCAAGATTGCCAAGCCACAAATCTGGCAAATGTGTGCCTATATTTACATTGCAGCAAATTCTATGTTCTACATTTACATTGCAGCAAATTCTATGTGCTTTACAAACACAGGAATTGTTCCTGCATGTGTCAAAAACTTCCCAGAAAGTCGTGGCATTATAATTGGCCTCCTCAAAGGGTACATTGGGCTTAGTGCGGCTATTATCACCCAAATTTATATAGCCATTTATGGAGTTCAGGACAGGAGGAGTATTATTCTTCTGATTGGTTGGCTCCCAGCTGCAATCACACTTGTGTTTCTGCATACAATTCGTCCCATAAGAATCAGTACTGAAAATCAACAACATAGCCAAAACCAAAACAAAAACCAGCTCAGAATGTTCTTCCAGTTTCTGTATGTATCAATTGGTTTGGCTTTGTTTCTCATGGCAATAACTCTGACTCAGAAATCGGTTGTGTTCCCTCCGGCAGCTCAAGCTGCGACAGCTACGGTGGTCTGCATCATTGTTTTGCTTCCTCTCTGGATGGCCGAATTAGTCAACTGGAAATTAATAAAACAAGCACCTCATGTAACCATTGAGAAACCACAAGAAGTAATTCCATCCAAACAAGAAGATCCTGCTTCTTCTTCTTCTCAACGAGAACAACAAGAACTAGAGTATCAAGAGGTGAAGAAGGCGAAACCACTTTTCAGCATTGACATGCTGATCATATTCATTGCAACCTTATTCGGACTTGGCTCAAGCTTTACTGCCACGGACAACCTAGGCCAAATCGGGGACGCGTTGGGGTACAAACCTCAGGCCATAAACACCTTTGTGTCACTCCACAGCATATGGAACTTTTTCGGTCGAATCTTTTCTGGGTTCGCCTCAGAAATCCTACTCATGAAATACAAAATCCCAAGACCCCTCATGCTCACTCTTGCCCTCATCTTGGCAAGCTTTGGCTACCTCTTCATTGTTTTTCCCTTCCCTGGTTCCTTGTACTTTGCTTCAGTCATCATCGGTTTTACTCTCGAGCTTCAGCTCCCATTGTGTGTGACAATCATTTCTGAGCTTTTTGGGTTGAAGCACTACGCGCTGCTGTTGAATTTTAGCCAATTGATGAGCCCTCTTGCCTCTTATATATTGAGTGCCAAGATCACCGGTGCGCTCTATGACAAAGAGGCAAAGAAGGAGCTTGCCAGGCTTGGTCTACAAAGGATCAAGGGCCAGCCTCTAACATGCATTGGAACTCAGTGTTATAAGCTGTCATTTACAATTTTGACTGCTATCACACTGTTTGCAGCTCTCGGCTCACTTGTTTTGGTGAAGAGAACACTAAAATTCTACAGAAGTGACATATACAAGAAGTTCAGAGACAATGCAGAGAAAGTAGTCAAGGCTGAAGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 Nodulin-like

Protein Analysis

544

Amino Acids

60.65

Weight (kDa)

9.32

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 392, 1479
AccI GTMKAC 1 cut(s) 1429
AccII CGCG 2 cut(s) 1016, 1313
AciI CCGC 1 cut(s) 428
AclWI GGATC 2 cut(s) 842, 1445
AcoI YGGCCR 1 cut(s) 759
AcsI RAATTY 5 cut(s) 289, 319, 444, 1324, 1559
AcuI CTGAAG 2 cut(s) 1212, 1241
AfaI GTAC 5 cut(s) 16, 413, 562, 1025, 1220
AfiI CCNNNNNNNGG 3 cut(s) 1009, 1168, 1208
AflIII ACRYGT 1 cut(s) 1014
AgeI ACCGGT 1 cut(s) 1379
AgsI TTSAA 2 cut(s) 1303, 1324
AjnI CCWGG 2 cut(s) 1207, 1418
AleI CACNNNNGTG 2 cut(s) 524, 1049
Alw21I GWGCWC 2 cut(s) 51, 174
Alw26I GTCTC 1 cut(s) 1587
AlwI GGATC 2 cut(s) 842, 1445
AlwNI CAGNNNCTG 1 cut(s) 625
Ama87I CYCGRG 1 cut(s) 1250
AoxI GGCC 5 cut(s) 397, 759, 1000, 1035, 1444
ApeKI GCWGC 8 cut(s) 185, 284, 314, 512, 701, 710, 1315, 1520
ApoI RAATTY 5 cut(s) 289, 319, 444, 1324, 1559
AseI ATTAAT 1 cut(s) 782
AsiGI ACCGGT 1 cut(s) 1379
Asp700I GAANNNNTTC 3 cut(s) 828, 1076, 1090
AspA2I CCTAGG 1 cut(s) 997
AspLEI GCGC 2 cut(s) 1315, 1387
AspS9I GGNCC 1 cut(s) 1444
AsuHPI GGTGA 4 cut(s) 430, 913, 1369, 1555
AsuNHI GCTAGC 1 cut(s) 220
AvaI CYCGRG 1 cut(s) 1250
AvrII CCTAGG 1 cut(s) 997
AxyI CCTNAGG 1 cut(s) 1032
BaeI ACNNNNGTAYC 2 cut(s) 875, 908
BanII GRGCYC 2 cut(s) 51, 1346
Bbv12I GWGCWC 2 cut(s) 51, 174
BbvI GCAGC 8 cut(s) 197, 296, 326, 499, 697, 713, 1302, 1532
BccI CCATC 2 cut(s) 751, 841
BcgI CGANNNNNNTGC 2 cut(s) 524, 558
BciT130I CCWGG 2 cut(s) 1209, 1420
BclI TGATCA 1 cut(s) 939
BcoDI GTCTC 1 cut(s) 1587
BfaI CTAG 3 cut(s) 221, 887, 998
BfmI CTRYAG 1 cut(s) 1564
BisI GCNGC 9 cut(s) 186, 285, 315, 429, 513, 702, 711, 1316, 1521
BlnI CCTAGG 1 cut(s) 997
BlsI GCNGC 9 cut(s) 187, 286, 316, 430, 514, 703, 712, 1317, 1522
BmcAI AGTACT 1 cut(s) 562
Bme1390I CCNGG 2 cut(s) 1209, 1420
BmeT110I CYCGRG 1 cut(s) 1250
BmgT120I GGNCC 1 cut(s) 1444
BmiI GGNNCC 2 cut(s) 506, 1213
BmrFI CCNGG 2 cut(s) 1209, 1420
BmsI GCATC 1 cut(s) 741
BmtI GCTAGC 1 cut(s) 224
BpuEI CTTGAG 2 cut(s) 690, 958
BsaJI CCNNGG 4 cut(s) 178, 987, 997, 1207
BsaWI WCCGGW 1 cut(s) 1379
Bsc4I CCNNNNNNNGG 3 cut(s) 1009, 1168, 1208
Bse118I RCCGGY 1 cut(s) 1379
Bse1I ACTGG 3 cut(s) 205, 619, 779
Bse21I CCTNAGG 1 cut(s) 1032
Bse3DI GCAATG 3 cut(s) 279, 309, 948
BseBI CCWGG 2 cut(s) 1209, 1420
BseDI CCNNGG 4 cut(s) 178, 987, 997, 1207
BseGI GGATG 2 cut(s) 762, 833
BseLI CCNNNNNNNGG 3 cut(s) 1009, 1168, 1208
BseMI GCAATG 3 cut(s) 279, 309, 948
BseMII CTCAG 6 cut(s) 619, 689, 1046, 1119, 1278, 1484
BseNI ACTGG 3 cut(s) 205, 619, 779
BseRI GAGGAG 3 cut(s) 164, 392, 493
BseXI GCAGC 8 cut(s) 197, 296, 326, 499, 697, 713, 1302, 1532
BseYI CCCAGC 1 cut(s) 508
BsgI GTGCAG 1 cut(s) 204
Bsh1236I CGCG 2 cut(s) 1016, 1313
Bsh1285I CGRYCG 1 cut(s) 1084
BshFI GGCC 5 cut(s) 399, 761, 1002, 1037, 1446
BshTI ACCGGT 1 cut(s) 1379
BsiEI CGRYCG 1 cut(s) 1084
BsiHKAI GWGCWC 2 cut(s) 51, 174
BsiHKCI CYCGRG 1 cut(s) 1250
BsiSI CCGG 2 cut(s) 698, 1380
BslFI GGGAC 2 cut(s) 531, 1025
BslI CCNNNNNNNGG 3 cut(s) 1009, 1168, 1208
BsmAI GTCTC 1 cut(s) 1587
BsmFI GGGAC 2 cut(s) 531, 1025
BsnI GGCC 5 cut(s) 399, 761, 1002, 1037, 1446
BsoBI CYCGRG 1 cut(s) 1250
Bsp1286I GDGCHC 3 cut(s) 51, 174, 1346
Bsp143I GATC 4 cut(s) 847, 939, 1374, 1437
BspACI CCGC 1 cut(s) 428
BspANI GGCC 5 cut(s) 399, 761, 1002, 1037, 1446
BspCNI CTCAG 6 cut(s) 618, 688, 1045, 1118, 1279, 1483
BspFNI CGCG 2 cut(s) 1016, 1313
BspHI TCATGA 2 cut(s) 210, 1119
BspLI GGNNCC 2 cut(s) 506, 1213
BspOI GCTAGC 1 cut(s) 224
BspPI GGATC 2 cut(s) 842, 1445
BsrDI GCAATG 3 cut(s) 279, 309, 948
BsrFI RCCGGY 1 cut(s) 1379
BsrI ACTGG 3 cut(s) 205, 619, 779
BssAI RCCGGY 1 cut(s) 1379
BssECI CCNNGG 4 cut(s) 178, 987, 997, 1207
BssMI GATC 4 cut(s) 847, 939, 1374, 1437
BssT1I CCWWGG 2 cut(s) 178, 997
Bst2UI CCWGG 2 cut(s) 1209, 1420
Bst4CI ACNGT 2 cut(s) 724, 1515
Bst6I CTCTTC 3 cut(s) 1193, 1541, 1617
BstC8I GCNNGC 5 cut(s) 136, 222, 1174, 1416, 1448
BstDEI CTNAG 7 cut(s) 422, 605, 675, 1032, 1105, 1287, 1470
BstDSI CCRYGG 1 cut(s) 987
BstF5I GGATG 2 cut(s) 762, 833
BstFNI CGCG 2 cut(s) 1016, 1313
BstHHI GCGC 2 cut(s) 1315, 1387
BstKTI GATC 4 cut(s) 850, 942, 1377, 1440
BstMAI GTCTC 1 cut(s) 1587
BstMBI GATC 4 cut(s) 847, 939, 1374, 1437
BstMCI CGRYCG 1 cut(s) 1084
BstMWI GCNNNNNNNGC 5 cut(s) 707, 710, 716, 1312, 1420
BstNI CCWGG 2 cut(s) 1209, 1420
BstNSI RCATGY 3 cut(s) 360, 937, 1461
BstSCI CCNGG 2 cut(s) 1207, 1418
BstSFI CTRYAG 1 cut(s) 1564
BstUI CGCG 2 cut(s) 1016, 1313
BstV1I GCAGC 8 cut(s) 197, 296, 326, 499, 697, 713, 1302, 1532
BstX2I RGATCY 1 cut(s) 847
BstXI CCANNNNNNTGG 2 cut(s) 29, 255
BstYI RGATCY 1 cut(s) 847
Bsu36I CCTNAGG 1 cut(s) 1032
BsuRI GGCC 5 cut(s) 399, 761, 1002, 1037, 1446
BtgI CCRYGG 1 cut(s) 987
BtsCI GGATG 2 cut(s) 762, 833
BtsIMutI CAGTG 3 cut(s) 198, 1478, 1511
Cac8I GCNNGC 5 cut(s) 136, 222, 1174, 1416, 1448
CaiI CAGNNNCTG 1 cut(s) 625
CciI TCATGA 2 cut(s) 210, 1119
CfoI GCGC 2 cut(s) 1315, 1387
Cfr10I RCCGGY 1 cut(s) 1379
Cfr13I GGNCC 1 cut(s) 1444
CseI GACGC 1 cut(s) 1022
Csp6I GTAC 5 cut(s) 15, 412, 561, 1024, 1219
CspAI ACCGGT 1 cut(s) 1379
CviQI GTAC 5 cut(s) 15, 412, 561, 1024, 1219
DdeI CTNAG 7 cut(s) 422, 605, 675, 1032, 1105, 1287, 1470
DpnI GATC 4 cut(s) 849, 941, 1376, 1439
DpnII GATC 4 cut(s) 847, 939, 1374, 1437
EaeI YGGCCR 1 cut(s) 759
Eam1104I CTCTTC 3 cut(s) 1193, 1541, 1617
EarI CTCTTC 3 cut(s) 1193, 1541, 1617
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 2 cut(s) 178, 997
Eco24I GRGCYC 2 cut(s) 51, 1346
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 2 cut(s) 1212, 1241
Eco81I CCTNAGG 1 cut(s) 1032
Eco88I CYCGRG 1 cut(s) 1250
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 2 cut(s) 1207, 1418
EcoT14I CCWWGG 2 cut(s) 178, 997
EcoT22I ATGCAT 1 cut(s) 1463
EcoT38I GRGCYC 2 cut(s) 51, 1346
ErhI CCWWGG 2 cut(s) 178, 997
FaqI GGGAC 2 cut(s) 531, 1025
FauNDI CATATG 1 cut(s) 1067
FbaI TGATCA 1 cut(s) 939
FblI GTMKAC 1 cut(s) 1429
Fnu4HI GCNGC 9 cut(s) 186, 285, 315, 429, 513, 702, 711, 1316, 1521
FokI GGATG 2 cut(s) 769, 820
FriOI GRGCYC 2 cut(s) 51, 1346
Fsp4HI GCNGC 9 cut(s) 186, 285, 315, 429, 513, 702, 711, 1316, 1521
FspBI CTAG 3 cut(s) 221, 887, 998
GlaI GCGC 2 cut(s) 1314, 1386
GluI GCNGC 9 cut(s) 186, 285, 315, 429, 513, 702, 711, 1316, 1521
GsaI CCCAGC 1 cut(s) 512
HaeIII GGCC 5 cut(s) 399, 761, 1002, 1037, 1446
HapII CCGG 2 cut(s) 698, 1380
HgaI GACGC 1 cut(s) 1022
HhaI GCGC 2 cut(s) 1315, 1387
Hin6I GCGC 2 cut(s) 1313, 1385
HinP1I GCGC 2 cut(s) 1313, 1385
HincII GTYRAC 2 cut(s) 118, 772
HindII GTYRAC 2 cut(s) 118, 772
HindIII AAGCTT 2 cut(s) 976, 1174
HinfI GANTC 3 cut(s) 555, 673, 1086
HpaII CCGG 2 cut(s) 698, 1380
HphI GGTGA 4 cut(s) 430, 913, 1369, 1555
Hpy166II GTNNAC 3 cut(s) 118, 772, 1430
Hpy188I TCNGA 8 cut(s) 495, 608, 672, 678, 965, 1108, 1288, 1592
Hpy188III TCNNGA 6 cut(s) 211, 470, 754, 896, 1120, 1250
Hpy8I GTNNAC 3 cut(s) 118, 772, 1430
HpyAV CCTTC 3 cut(s) 901, 1213, 1402
HpyCH4III ACNGT 2 cut(s) 724, 1515
HpyF10VI GCNNNNNNNGC 5 cut(s) 707, 710, 716, 1312, 1420
HpyF3I CTNAG 7 cut(s) 422, 605, 675, 1032, 1105, 1287, 1470
HspAI GCGC 2 cut(s) 1313, 1385
Ksp22I TGATCA 1 cut(s) 939
Kzo9I GATC 4 cut(s) 847, 939, 1374, 1437
LmnI GCTCC 4 cut(s) 177, 510, 1266, 1411
Lsp1109I GCAGC 8 cut(s) 197, 296, 326, 499, 697, 713, 1302, 1532
LweI GCATC 1 cut(s) 741
MaeI CTAG 3 cut(s) 221, 887, 998
MaeIII GTNAC 7 cut(s) 55, 151, 226, 802, 1053, 1273, 1571
MalI GATC 4 cut(s) 849, 941, 1376, 1439
MboI GATC 4 cut(s) 847, 939, 1374, 1437
MboII GAAGA 9 cut(s) 482, 607, 849, 852, 855, 857, 916, 1180, 1558
MfeI CAATTG 2 cut(s) 636, 1334
MflI RGATCY 1 cut(s) 847
MhlI GDGCHC 3 cut(s) 51, 174, 1346
MluI ACGCGT 1 cut(s) 1014
MlyI GAGTC 1 cut(s) 667
Mph1103I ATGCAT 1 cut(s) 1463
MroXI GAANNNNTTC 3 cut(s) 828, 1076, 1090
MseI TTAA 2 cut(s) 140, 782
MslI CAYNNNNRTG 4 cut(s) 160, 524, 932, 1049
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 2 cut(s) 698, 1380
MspR9I CCNGG 2 cut(s) 1209, 1420
MunI CAATTG 2 cut(s) 636, 1334
MvaI CCWGG 2 cut(s) 1209, 1420
MvnI CGCG 2 cut(s) 1016, 1313
MwoI GCNNNNNNNGC 5 cut(s) 707, 710, 716, 1312, 1420
NdeI CATATG 1 cut(s) 1067
NdeII GATC 4 cut(s) 847, 939, 1374, 1437
NheI GCTAGC 1 cut(s) 220
NlaIV GGNNCC 2 cut(s) 506, 1213
NmeAIII GCCGAG 1 cut(s) 1506
NmuCI GTSAC 4 cut(s) 55, 1053, 1273, 1571
NsiI ATGCAT 1 cut(s) 1463
NspI RCATGY 3 cut(s) 360, 937, 1461
OliI CACNNNNGTG 2 cut(s) 524, 1049
PaeR7I CTCGAG 1 cut(s) 1250
PagI TCATGA 2 cut(s) 210, 1119
PdmI GAANNNNTTC 3 cut(s) 828, 1076, 1090
PfeI GAWTC 2 cut(s) 555, 1086
PinAI ACCGGT 1 cut(s) 1379
PkrI GCNGC 9 cut(s) 187, 286, 316, 430, 514, 703, 712, 1317, 1522
PleI GAGTC 1 cut(s) 667
PpsI GAGTC 1 cut(s) 667
PshBI ATTAAT 1 cut(s) 782
PsiI TTATAA 2 cut(s) 392, 1479
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 2 cut(s) 1207, 1418
PspFI CCCAGC 1 cut(s) 508
PspGI CCWGG 2 cut(s) 1207, 1418
PspN4I GGNNCC 2 cut(s) 506, 1213
PspPI GGNCC 1 cut(s) 1444
PstNI CAGNNNCTG 1 cut(s) 625
PsuI RGATCY 1 cut(s) 847
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 5 cut(s) 16, 413, 562, 1025, 1220
RsaNI GTAC 5 cut(s) 15, 412, 561, 1024, 1219
RseI CAYNNNNRTG 4 cut(s) 160, 524, 932, 1049
SacI GAGCTC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 140, 782
SatI GCNGC 9 cut(s) 186, 285, 315, 429, 513, 702, 711, 1316, 1521
Sau3AI GATC 4 cut(s) 847, 939, 1374, 1437
Sau96I GGNCC 1 cut(s) 1444
ScaI AGTACT 1 cut(s) 562
SchI GAGTC 1 cut(s) 667
ScrFI CCNGG 2 cut(s) 1209, 1420
SduI GDGCHC 3 cut(s) 51, 174, 1346
SfaNI GCATC 1 cut(s) 741
SfcI CTRYAG 1 cut(s) 1564
Sfr274I CTCGAG 1 cut(s) 1250
SgrAI CRCCGGYG 1 cut(s) 1379
SlaI CTCGAG 1 cut(s) 1250
SmiMI CAYNNNNRTG 4 cut(s) 160, 524, 932, 1049
SmlI CTYRAG 3 cut(s) 705, 973, 1250
SmoI CTYRAG 3 cut(s) 705, 973, 1250
SsiI CCGC 1 cut(s) 428
SspMI CTAG 3 cut(s) 221, 887, 998
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 1207, 1418
StyI CCWWGG 2 cut(s) 178, 997
TaaI ACNGT 2 cut(s) 724, 1515
TaqI TCGA 2 cut(s) 1084, 1251
TaqII GACCGA 1 cut(s) 1070
TatI WGTACW 2 cut(s) 560, 1218
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 2 cut(s) 555, 1086
Tru1I TTAA 2 cut(s) 140, 782
Tru9I TTAA 2 cut(s) 140, 782
TscAI CASTG 3 cut(s) 205, 1478, 1518
TseFI GTSAC 4 cut(s) 55, 1053, 1273, 1571
TseI GCWGC 8 cut(s) 185, 284, 314, 512, 701, 710, 1315, 1520
Tsp45I GTSAC 4 cut(s) 55, 1053, 1273, 1571
TspDTI ATGAA 5 cut(s) 199, 206, 937, 1136, 1180
TspGWI ACGGA 1 cut(s) 1004
TspRI CASTG 3 cut(s) 205, 1478, 1518
VspI ATTAAT 1 cut(s) 782
XapI RAATTY 5 cut(s) 289, 319, 444, 1324, 1559
XceI RCATGY 3 cut(s) 360, 937, 1461
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 1250
XmaJI CCTAGG 1 cut(s) 997
XmiI GTMKAC 1 cut(s) 1429
XmnI GAANNNNTTC 3 cut(s) 828, 1076, 1090
XspI CTAG 3 cut(s) 221, 887, 998
ZrmI AGTACT 1 cut(s) 562
Zsp2I ATGCAT 1 cut(s) 1463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.