Prupe.6G265100_v2.0.a1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
25388397 .. 25389361
965 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G265100.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 564 bp
ATGGACTTCTCATCAAAGAGCAGCAAGGCGCTGGGATGGGCTTTAGCTAATTTGGTGAAGGGTGACACACTTTACATCATTCACGTCAAGCCTACAAATGCTTATAACAAACTTTGGGCCGAATCTGGTTCTCCTCTTATTCCACTGACAGAGTTCGGAGAGCCGGAGATCATGAAGAAGTACGATGTCCAAACCGATATCGAAGTTCTTGACACACTTGACACTGCTGCCAAGCAGAAAGAGGTGAACGTTGTGACAAAGCTATACTGGGGAGATGCAAGGAAGAAGCTCATTGAGGCGATTGAAGACCTGAAGCTGGACTCTTTGGTCATGGGAAGCAGAGGCCTTGGTGCCATCAAAACGATCATAGTGGGGAGCGTGGCTAAGTATGTGCTCGCATACTCCATTCCCAGACCATCGTCAAGTACCCAAATTTCCAGCATTTCCATTAATATAATTAGAAACTTTGGATTTGGGTTTTTAATAATCTATCACCAATTGTTAACATGGGTATTAATGCTTGATTGGTATGTTTTACTTGATCTTGGAGACTTGGTCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

188

Amino Acids

20.81

Weight (kDa)

6.12

Isoelectric Point (pI)

28.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
AasI GACNNNNNNGTC 1 cut(s) 326
AccB1I GGYRCC 1 cut(s) 350
AclI AACGTT 1 cut(s) 249
AcsI RAATTY 1 cut(s) 432
AcuI CTGAAG 1 cut(s) 332
AfaI GTAC 2 cut(s) 182, 427
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 1 cut(s) 305
AjiI CACGTC 1 cut(s) 85
AluBI AGCT 4 cut(s) 47, 262, 289, 316
AluI AGCT 4 cut(s) 47, 262, 289, 316
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 1 cut(s) 543
AoxI GGCC 2 cut(s) 117, 343
ApeKI GCWGC 2 cut(s) 21, 227
ApoI RAATTY 1 cut(s) 432
AseI ATTAAT 2 cut(s) 450, 515
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 117
AsuHPI GGTGA 4 cut(s) 67, 74, 256, 485
BanI GGYRCC 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 33, 214
BccI CCATC 3 cut(s) 30, 362, 424
BcoDI GTCTC 1 cut(s) 543
BfaI CTAG 1 cut(s) 562
BfoI RGCGCY 1 cut(s) 32
BisI GCNGC 2 cut(s) 22, 228
BlsI GCNGC 2 cut(s) 23, 229
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 352
BmrI ACTGGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 277
BoxI GACNNNNGTC 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 346
BsaXI ACNNNNNCTCC 2 cut(s) 540, 542
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 316
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 123
BseXI GCAGC 2 cut(s) 33, 214
BseYI CCCAGC 1 cut(s) 31
BshFI GGCC 2 cut(s) 119, 345
BshNI GGYRCC 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 396
BsiSI CCGG 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 543
BsnI GGCC 2 cut(s) 119, 345
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 3 cut(s) 168, 363, 541
BspANI GGCC 2 cut(s) 119, 345
BspHI TCATGA 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 352
BspT107I GGYRCC 1 cut(s) 350
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 3 cut(s) 168, 363, 541
BssT1I CCWWGG 1 cut(s) 346
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 384
BstF5I GGATG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 3 cut(s) 171, 366, 544
BstMAI GTCTC 1 cut(s) 543
BstMBI GATC 3 cut(s) 168, 363, 541
BstPAI GACNNNNGTC 1 cut(s) 418
BstV1I GCAGC 2 cut(s) 33, 214
BstV2I GAAGAC 1 cut(s) 312
BsuRI GGCC 2 cut(s) 119, 345
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 41
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 2 cut(s) 143, 222
Cac8I GCNNGC 1 cut(s) 396
CciI TCATGA 1 cut(s) 171
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 117
Csp6I GTAC 2 cut(s) 181, 426
CviAII CATG 3 cut(s) 172, 331, 507
CviQI GTAC 2 cut(s) 181, 426
DdeI CTNAG 1 cut(s) 384
DpnI GATC 3 cut(s) 170, 365, 543
DpnII GATC 3 cut(s) 168, 363, 541
DrdI GACNNNNNNGTC 1 cut(s) 326
DseDI GACNNNNNNGTC 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 346
Eco147I AGGCCT 1 cut(s) 345
Eco32I GATATC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 332
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 346
FaeI CATG 3 cut(s) 175, 334, 510
FatI CATG 3 cut(s) 171, 330, 506
Fnu4HI GCNGC 2 cut(s) 22, 228
FokI GGATG 1 cut(s) 48
Fsp4HI GCNGC 2 cut(s) 22, 228
FspBI CTAG 1 cut(s) 562
GlaI GCGC 1 cut(s) 30
GluI GCNGC 2 cut(s) 22, 228
GsaI CCCAGC 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 2 cut(s) 119, 345
HapII CCGG 1 cut(s) 164
HhaI GCGC 1 cut(s) 31
Hin1II CATG 3 cut(s) 175, 334, 510
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HinfI GANTC 2 cut(s) 122, 320
HpaI GTTAAC 1 cut(s) 504
HpaII CCGG 1 cut(s) 164
HphI GGTGA 4 cut(s) 67, 74, 256, 485
Hpy166II GTNNAC 2 cut(s) 247, 504
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 2 cut(s) 172, 209
Hpy8I GTNNAC 2 cut(s) 247, 504
HpyAV CCTTC 1 cut(s) 52
HpyCH4IV ACGT 2 cut(s) 84, 249
HpyCH4V TGCA 1 cut(s) 278
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 2 cut(s) 84, 249
Hsp92II CATG 3 cut(s) 175, 334, 510
HspAI GCGC 1 cut(s) 29
KspAI GTTAAC 1 cut(s) 504
Kzo9I GATC 3 cut(s) 168, 363, 541
LmnI GCTCC 1 cut(s) 375
LpnPI CCDG 8 cut(s) 17, 111, 177, 253, 302, 323, 424, 451
Lsp1109I GCAGC 2 cut(s) 33, 214
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 562
MaeII ACGT 2 cut(s) 84, 249
MaeIII GTNAC 2 cut(s) 62, 253
MalI GATC 3 cut(s) 170, 365, 543
MboI GATC 3 cut(s) 168, 363, 541
MboII GAAGA 3 cut(s) 187, 295, 317
MfeI CAATTG 1 cut(s) 497
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 4 cut(s) 49, 432, 456, 497
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 4 cut(s) 144, 235, 289, 335
MseI TTAA 4 cut(s) 450, 482, 503, 515
MspI CCGG 1 cut(s) 164
MunI CAATTG 1 cut(s) 497
NdeII GATC 3 cut(s) 168, 363, 541
NlaIII CATG 3 cut(s) 175, 334, 510
NlaIV GGNNCC 1 cut(s) 352
NmuCI GTSAC 2 cut(s) 62, 253
PagI TCATGA 1 cut(s) 171
PceI AGGCCT 1 cut(s) 345
PfeI GAWTC 1 cut(s) 122
PflFI GACNNNGTC 1 cut(s) 554
PkrI GCNGC 2 cut(s) 23, 229
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
PshAI GACNNNNGTC 1 cut(s) 418
PshBI ATTAAT 2 cut(s) 450, 515
PsiI TTATAA 1 cut(s) 105
Psp1406I AACGTT 1 cut(s) 249
PspFI CCCAGC 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 117
PsyI GACNNNGTC 1 cut(s) 554
RsaI GTAC 2 cut(s) 182, 427
RsaNI GTAC 2 cut(s) 181, 426
SaqAI TTAA 4 cut(s) 450, 482, 503, 515
SatI GCNGC 2 cut(s) 22, 228
Sau3AI GATC 3 cut(s) 168, 363, 541
Sau96I GGNCC 1 cut(s) 117
SchI GAGTC 1 cut(s) 314
SduI GDGCHC 1 cut(s) 396
SetI ASST 8 cut(s) 49, 87, 246, 252, 264, 291, 312, 318
SfaNI GCATC 1 cut(s) 265
Sse9I AATT 4 cut(s) 49, 432, 456, 497
SseBI AGGCCT 1 cut(s) 345
SspMI CTAG 1 cut(s) 562
StuI AGGCCT 1 cut(s) 345
StyI CCWWGG 1 cut(s) 346
TaiI ACGT 2 cut(s) 87, 252
TaqI TCGA 1 cut(s) 201
TasI AATT 4 cut(s) 49, 432, 456, 497
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 4 cut(s) 450, 482, 503, 515
Tru9I TTAA 4 cut(s) 450, 482, 503, 515
TscAI CASTG 2 cut(s) 150, 229
TseFI GTSAC 2 cut(s) 62, 253
TseI GCWGC 2 cut(s) 21, 227
Tsp45I GTSAC 2 cut(s) 62, 253
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 2 cut(s) 150, 229
Tth111I GACNNNGTC 1 cut(s) 554
VspI ATTAAT 2 cut(s) 450, 515
XapI RAATTY 1 cut(s) 432
XspI CTAG 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.