Prupe.6G268500_v2.0.a1

pfkB family carbohydrate kinase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
25590306 .. 25591924
1619 bp
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UTR
Exon/CDS
Intron
Prupe.6G268500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 249 bp
ATGAACACCGCACAAGATAATCCTACAAAAGCTTTATGTACCTCTCAACCACCAACCGATCTCCCATCATTTCTTCATTACACTGTTATTAGGGAAGACGGTGAGAGGAAATATGGGGTGGTGAGGGGTGTGGCTACAGAGAAGGTGGAGAAGCTGAAGCAGAGGGAGTTTTTGATGGCAAGATATAACCCTCCTTGGACTTTGCCTCAATTCAGGACCAATGAGGTTATGATCCCAATTGAGTTGTAG

Protein Analysis

83

Amino Acids

9.51

Weight (kDa)

7.88

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 9
AclWI GGATC 1 cut(s) 226
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 1 cut(s) 40
AluBI AGCT 2 cut(s) 32, 154
AluI AGCT 2 cut(s) 32, 154
AlwI GGATC 1 cut(s) 226
AspS9I GGNCC 1 cut(s) 216
AsuHPI GGTGA 2 cut(s) 113, 133
AvaII GGWCC 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 102
BccI CCATC 2 cut(s) 73, 169
BfmI CTRYAG 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 194
Bsp143I GATC 2 cut(s) 58, 231
BspACI CCGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 2 cut(s) 58, 231
BssT1I CCWWGG 1 cut(s) 194
Bst4CI ACNGT 2 cut(s) 85, 101
BstKTI GATC 2 cut(s) 61, 234
BstMBI GATC 2 cut(s) 58, 231
BstSFI CTRYAG 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 39
CviJI RGCY 3 cut(s) 32, 134, 154
CviKI_1 RGCY 3 cut(s) 32, 134, 154
CviQI GTAC 1 cut(s) 39
DpnI GATC 2 cut(s) 60, 233
DpnII GATC 2 cut(s) 58, 231
Eco130I CCWWGG 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaiI YATR 4 cut(s) 37, 114, 186, 230
HindIII AAGCTT 1 cut(s) 30
HphI GGTGA 2 cut(s) 113, 133
Hpy188III TCNNGA 1 cut(s) 214
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 2 cut(s) 85, 101
Kzo9I GATC 2 cut(s) 58, 231
LpnPI CCDG 1 cut(s) 199
MalI GATC 2 cut(s) 60, 233
MboI GATC 2 cut(s) 58, 231
MboII GAAGA 2 cut(s) 65, 107
MfeI CAATTG 1 cut(s) 237
MluCI AATT 2 cut(s) 209, 237
MnlI CCTC 7 cut(s) 52, 99, 117, 156, 201, 216, 217
MunI CAATTG 1 cut(s) 237
NdeII GATC 2 cut(s) 58, 231
PspPI GGNCC 1 cut(s) 216
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
Sau3AI GATC 2 cut(s) 58, 231
Sau96I GGNCC 1 cut(s) 216
SetI ASST 5 cut(s) 34, 44, 147, 156, 228
SfcI CTRYAG 1 cut(s) 135
SgeI CNNG 4 cut(s) 26, 192, 207, 226
SinI GGWCC 1 cut(s) 216
Sse9I AATT 2 cut(s) 209, 237
SsiI CCGC 1 cut(s) 9
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 85, 101
TasI AATT 2 cut(s) 209, 237
TscAI CASTG 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 17, 65
TspRI CASTG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.