Prupe.6G272200_v2.0.a1

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
25767361 .. 25769394
2034 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G272200.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 1320 bp
ATGCCACTTTTCACGCAACATATTGTGGATGCTTTCCTGGGCAACTATCGGATGCTCATGATCTCCAGTACTTATGCTTTCGTCGCGGGTTTTGGTGCTTTGGCACTATCAACACCGCCAATGCTTGGGTGGGCAACAGCGCTACCTCTAATAGCCGTTGGAATCACTGGTCAAGCAACCTCTTTAGTGCAGCTCGCCCATGACGAGAGACCACAATGGCTTGGCCCTCTCACATTCACTGCTCCAATAACCTCGCTGGTCCAATCCGCCCACGACCAGACTACACCAGAATCAGGCATTTCCTCTTCAACGGTAATGATGGCCCAACTAACCGCGTTATTGCGATCCGCCCGCGGCCAGACACCAGAATCCGATGGCCCCTTCGTCTTCACCCCGGGAATGCGCGGCCTTGCTCTCGCCGCAGTCTGCATACTCGGTTATGTAACCTCTTGGTTGATTAAATATGGCGTCTCTGCCCTAGTTATCATAATGGCAGCATTTAGTTTCGCGGCGCTGTCACCTTGTTCTTCCAAACGTGTTAAAGCACAAGGGGTTCCTGTGAAGTGGAAAGAAACCAAAAACATCCTGTTGGTGACGCTTGTAGGCGCCTTGTTCGTGGCGATGAGCGTTGTGTCCGCTATTGGAAACACTTACTTCGTTCTGCAAGCGAGTCACTTGAACCAGAAGGTTTGGTTCGTGAAGTTTCCTCTTCCCATTCTTCTGTTTGCGTATAACGAAGCCAGATCAAAGTTTGGGGGGTTAAAACGGTCTGTCGTTGCCATCTCCATCGGGCTCGCAGCGTCAATGGTGGTTTCGAGTCTGTGTTGTGTCGTAGCTGCGCTGGTGGAAGCTCGAAAGCTGGCCGTGGTTAAGAGCTCCGGTTTGATAGACTTGCCCGAAGAAACAATTCCTATGAGCATGTTCTGGCTGGTTCCACAGTTTGTTCTGCTTGGGTGCGCTGATGGGATTTTTCGTAGGGCAATCGGTTCTCTGTACATGGTGGCATTGATATCTGATGAGGAGGCTAAAAATCTGGAAGCATCGAAAGTCCTGCAGTGCCAGTACGCGGGTTTCTATGATATGGCTGTTTATGGAGTGGGAGTTATGGGCAGCGTGTTATCGGTTCTTGTGGTGGGTGAGATAAGCGCAGAGGGGGGGAAGATCAATTGGTTTCAGCACACCCTAAACACAAGTCGTTTGGATAATTACTACTGGACCTTGGCTGCCTTGGTTGCAATCAATCTGCTGATATTCTTTGTTTTGGCCGCATGCTGTGGTGCCTGTTTTTATGTGGTTTCAAGGTTCAAGGATGCGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

440

Amino Acids

47.14

Weight (kDa)

8.88

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 605, 1277
AccB7I CCANNNNNTGG 1 cut(s) 125
AccII CGCG 6 cut(s) 86, 335, 354, 405, 509, 1067
AclWI GGATC 1 cut(s) 339
AcoI YGGCCR 3 cut(s) 355, 861, 1263
AcyI GRCGYC 2 cut(s) 468, 606
AfaI GTAC 3 cut(s) 70, 995, 1064
AfeI AGCGCT 1 cut(s) 141
AfiI CCNNNNNNNGG 3 cut(s) 125, 293, 1066
AflIII ACRYGT 1 cut(s) 535
AgsI TTSAA 4 cut(s) 309, 679, 1299, 1306
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 5 cut(s) 193, 836, 851, 859, 876
AluI AGCT 5 cut(s) 193, 836, 851, 859, 876
Alw21I GWGCWC 1 cut(s) 878
Alw26I GTCTC 2 cut(s) 202, 475
AlwI GGATC 1 cut(s) 339
Ama87I CYCGRG 1 cut(s) 394
Aor51HI AGCGCT 1 cut(s) 141
AoxI GGCC 7 cut(s) 223, 321, 355, 376, 406, 861, 1263
ApeKI GCWGC 6 cut(s) 190, 494, 797, 836, 1110, 1223
Asp700I GAANNNNTTC 1 cut(s) 906
AspLEI GCGC 7 cut(s) 142, 405, 514, 608, 841, 959, 1148
AspS9I GGNCC 5 cut(s) 224, 259, 322, 377, 1215
AsuC2I CCSGG 2 cut(s) 395, 396
AsuHPI GGTGA 4 cut(s) 382, 510, 604, 1148
AvaI CYCGRG 1 cut(s) 394
AvaII GGWCC 2 cut(s) 259, 1215
BanI GGYRCC 2 cut(s) 605, 1277
BanII GRGCYC 2 cut(s) 795, 878
BbsI GAAGAC 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 878
BbvI GCAGC 6 cut(s) 202, 506, 809, 823, 1122, 1210
BccI CCATC 5 cut(s) 313, 368, 788, 794, 956
BceAI ACGGC 2 cut(s) 140, 848
BcgI CGANNNNNNTGC 2 cut(s) 1033, 1067
BciT130I CCWGG 1 cut(s) 38
BcnI CCSGG 2 cut(s) 395, 396
BcoDI GTCTC 2 cut(s) 202, 475
BfaI CTAG 1 cut(s) 479
BfmI CTRYAG 1 cut(s) 1052
BfoI RGCGCY 3 cut(s) 143, 515, 609
BmcAI AGTACT 1 cut(s) 70
Bme1390I CCNGG 3 cut(s) 38, 395, 396
Bme18I GGWCC 2 cut(s) 259, 1215
BmeT110I CYCGRG 1 cut(s) 394
BmgT120I GGNCC 5 cut(s) 224, 259, 322, 377, 1215
BmiI GGNNCC 5 cut(s) 379, 555, 607, 933, 1279
BmrFI CCNGG 3 cut(s) 38, 395, 396
BmsI GCATC 4 cut(s) 19, 42, 1049, 1300
BpiI GAAGAC 1 cut(s) 379
BpmI CTGGAG 1 cut(s) 49
BpuMI CCSGG 2 cut(s) 395, 396
BsaHI GRCGYC 2 cut(s) 468, 606
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 7 cut(s) 37, 352, 393, 394, 864, 1218, 1227
BsaWI WCCGGW 1 cut(s) 878
BsaXI ACNNNNNCTCC 2 cut(s) 1086, 1116
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 293, 1066
Bse1I ACTGG 4 cut(s) 66, 172, 1060, 1217
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 7 cut(s) 37, 352, 393, 394, 864, 1218, 1227
BseGI GGATG 4 cut(s) 34, 57, 582, 1315
BseLI CCNNNNNNNGG 3 cut(s) 125, 293, 1066
BseNI ACTGG 4 cut(s) 66, 172, 1060, 1217
BseRI GAGGAG 1 cut(s) 1034
BseXI GCAGC 6 cut(s) 202, 506, 809, 823, 1122, 1210
BsgI GTGCAG 1 cut(s) 209
Bsh1236I CGCG 6 cut(s) 86, 335, 354, 405, 509, 1067
BshFI GGCC 7 cut(s) 225, 323, 357, 378, 408, 863, 1265
BshNI GGYRCC 2 cut(s) 605, 1277
BsiHKAI GWGCWC 1 cut(s) 878
BsiHKCI CYCGRG 1 cut(s) 394
BsiSI CCGG 2 cut(s) 395, 879
BslI CCNNNNNNNGG 3 cut(s) 125, 293, 1066
BsmAI GTCTC 2 cut(s) 202, 475
BsmBI CGTCTC 1 cut(s) 475
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 7 cut(s) 225, 323, 357, 378, 408, 863, 1265
Bso31I GGTCTC 1 cut(s) 202
BsoBI CYCGRG 1 cut(s) 394
Bsp1286I GDGCHC 2 cut(s) 795, 878
Bsp1407I TGTACA 1 cut(s) 993
Bsp143I GATC 4 cut(s) 60, 344, 743, 1161
BspANI GGCC 7 cut(s) 225, 323, 357, 378, 408, 863, 1265
BspFNI CGCG 6 cut(s) 86, 335, 354, 405, 509, 1067
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 5 cut(s) 379, 555, 607, 933, 1279
BspMAI CTGCAG 1 cut(s) 1056
BspPI GGATC 1 cut(s) 339
BspT107I GGYRCC 2 cut(s) 605, 1277
BspTNI GGTCTC 1 cut(s) 202
BsrGI TGTACA 1 cut(s) 993
BsrI ACTGG 4 cut(s) 66, 172, 1060, 1217
BssECI CCNNGG 7 cut(s) 37, 352, 393, 394, 864, 1218, 1227
BssMI GATC 4 cut(s) 60, 344, 743, 1161
BssNI GRCGYC 2 cut(s) 468, 606
BssT1I CCWWGG 2 cut(s) 1218, 1227
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 3 cut(s) 313, 768, 939
Bst6I CTCTTC 2 cut(s) 310, 714
BstACI GRCGYC 2 cut(s) 468, 606
BstAUI TGTACA 1 cut(s) 993
BstC8I GCNNGC 6 cut(s) 195, 352, 666, 795, 861, 1270
BstDSI CCRYGG 2 cut(s) 352, 864
BstF5I GGATG 4 cut(s) 34, 57, 582, 1315
BstFNI CGCG 6 cut(s) 86, 335, 354, 405, 509, 1067
BstH2I RGCGCY 3 cut(s) 143, 515, 609
BstHHI GCGC 7 cut(s) 142, 405, 514, 608, 841, 959, 1148
BstKTI GATC 4 cut(s) 63, 347, 746, 1164
BstMAI GTCTC 2 cut(s) 202, 475
BstMBI GATC 4 cut(s) 60, 344, 743, 1161
BstMWI GCNNNNNNNGC 3 cut(s) 83, 419, 1232
BstNI CCWGG 1 cut(s) 38
BstNSI RCATGY 2 cut(s) 922, 1272
BstSCI CCNGG 3 cut(s) 36, 393, 394
BstSFI CTRYAG 1 cut(s) 1052
BstUI CGCG 6 cut(s) 86, 335, 354, 405, 509, 1067
BstV1I GCAGC 6 cut(s) 202, 506, 809, 823, 1122, 1210
BstV2I GAAGAC 1 cut(s) 379
BsuRI GGCC 7 cut(s) 225, 323, 357, 378, 408, 863, 1265
BtgI CCRYGG 2 cut(s) 352, 864
BtgZI GCGATG 1 cut(s) 635
BtsCI GGATG 4 cut(s) 34, 57, 582, 1315
BtsI GCAGTG 2 cut(s) 237, 1061
BtsIMutI CAGTG 3 cut(s) 165, 237, 1061
Cac8I GCNNGC 6 cut(s) 195, 352, 666, 795, 861, 1270
CciI TCATGA 1 cut(s) 57
CfoI GCGC 7 cut(s) 142, 405, 514, 608, 841, 959, 1148
Cfr13I GGNCC 5 cut(s) 224, 259, 322, 377, 1215
Cfr42I CCGCGG 1 cut(s) 355
Cfr9I CCCGGG 1 cut(s) 394
CseI GACGC 3 cut(s) 457, 604, 789
Csp6I GTAC 3 cut(s) 69, 994, 1063
CviAII CATG 5 cut(s) 58, 200, 919, 997, 1269
CviQI GTAC 3 cut(s) 69, 994, 1063
DinI GGCGCC 1 cut(s) 607
DpnI GATC 4 cut(s) 62, 346, 745, 1163
DpnII GATC 4 cut(s) 60, 344, 743, 1161
EaeI YGGCCR 3 cut(s) 355, 861, 1263
Eam1104I CTCTTC 2 cut(s) 310, 714
EarI CTCTTC 2 cut(s) 310, 714
EciI GGCGGA 2 cut(s) 256, 337
Ecl136II GAGCTC 1 cut(s) 876
Eco130I CCWWGG 2 cut(s) 1218, 1227
Eco24I GRGCYC 2 cut(s) 795, 878
Eco31I GGTCTC 1 cut(s) 202
Eco32I GATATC 1 cut(s) 1011
Eco47I GGWCC 2 cut(s) 259, 1215
Eco47III AGCGCT 1 cut(s) 141
Eco53kI GAGCTC 1 cut(s) 876
Eco88I CYCGRG 1 cut(s) 394
EcoICRI GAGCTC 1 cut(s) 876
EcoRII CCWGG 1 cut(s) 36
EcoRV GATATC 1 cut(s) 1011
EcoT14I CCWWGG 2 cut(s) 1218, 1227
EcoT38I GRGCYC 2 cut(s) 795, 878
EgeI GGCGCC 1 cut(s) 607
EheI GGCGCC 1 cut(s) 607
ErhI CCWWGG 2 cut(s) 1218, 1227
Esp3I CGTCTC 1 cut(s) 475
FaeI CATG 5 cut(s) 61, 203, 922, 1000, 1272
FatI CATG 5 cut(s) 57, 199, 918, 996, 1268
FauI CCCGC 3 cut(s) 79, 359, 1060
FokI GGATG 3 cut(s) 41, 64, 569
FriOI GRGCYC 2 cut(s) 795, 878
FspBI CTAG 1 cut(s) 479
GlaI GCGC 7 cut(s) 141, 404, 513, 607, 840, 958, 1147
GsuI CTGGAG 1 cut(s) 49
HaeII RGCGCY 3 cut(s) 143, 515, 609
HaeIII GGCC 7 cut(s) 225, 323, 357, 378, 408, 863, 1265
HapII CCGG 2 cut(s) 395, 879
HgaI GACGC 3 cut(s) 457, 604, 789
HhaI GCGC 7 cut(s) 142, 405, 514, 608, 841, 959, 1148
Hin1I GRCGYC 2 cut(s) 468, 606
Hin1II CATG 5 cut(s) 61, 203, 922, 1000, 1272
Hin6I GCGC 7 cut(s) 140, 403, 512, 606, 839, 957, 1146
HinP1I GCGC 7 cut(s) 140, 403, 512, 606, 839, 957, 1146
HinfI GANTC 5 cut(s) 162, 290, 368, 670, 817
HpaII CCGG 2 cut(s) 395, 879
HphI GGTGA 4 cut(s) 382, 510, 604, 1148
Hpy188I TCNGA 3 cut(s) 51, 373, 1015
Hpy188III TCNNGA 3 cut(s) 58, 697, 1034
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 391, 679
HpyCH4III ACNGT 3 cut(s) 313, 768, 939
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 5 cut(s) 190, 429, 664, 1054, 1235
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 419, 1232
HpySE526I ACGT 1 cut(s) 535
Hsp92I GRCGYC 2 cut(s) 468, 606
Hsp92II CATG 5 cut(s) 61, 203, 922, 1000, 1272
HspAI GCGC 7 cut(s) 140, 403, 512, 606, 839, 957, 1146
KasI GGCGCC 1 cut(s) 605
KspI CCGCGG 1 cut(s) 355
Kzo9I GATC 4 cut(s) 60, 344, 743, 1161
LmnI GCTCC 2 cut(s) 247, 881
Lsp1109I GCAGC 6 cut(s) 202, 506, 809, 823, 1122, 1210
LweI GCATC 4 cut(s) 19, 42, 1049, 1300
MaeI CTAG 1 cut(s) 479
MaeII ACGT 1 cut(s) 535
MaeIII GTNAC 4 cut(s) 442, 516, 592, 671
MalI GATC 4 cut(s) 62, 346, 745, 1163
MboI GATC 4 cut(s) 60, 344, 743, 1161
MboII GAAGA 7 cut(s) 297, 379, 519, 701, 710, 911, 1171
MfeI CAATTG 1 cut(s) 1165
MhlI GDGCHC 2 cut(s) 795, 878
MluCI AATT 3 cut(s) 906, 1165, 1204
Mly113I GGCGCC 1 cut(s) 606
MlyI GAGTC 2 cut(s) 679, 826
MmeI TCCRAC 1 cut(s) 139
MroXI GAANNNNTTC 1 cut(s) 906
MseI TTAA 4 cut(s) 459, 540, 761, 870
MspA1I CMGCKG 1 cut(s) 354
MspI CCGG 2 cut(s) 395, 879
MspR9I CCNGG 3 cut(s) 38, 395, 396
MunI CAATTG 1 cut(s) 1165
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 6 cut(s) 86, 335, 354, 405, 509, 1067
MwoI GCNNNNNNNGC 3 cut(s) 83, 419, 1232
NarI GGCGCC 1 cut(s) 606
NciI CCSGG 2 cut(s) 395, 396
NdeII GATC 4 cut(s) 60, 344, 743, 1161
NlaIII CATG 5 cut(s) 61, 203, 922, 1000, 1272
NlaIV GGNNCC 5 cut(s) 379, 555, 607, 933, 1279
NmuCI GTSAC 3 cut(s) 516, 592, 671
NspI RCATGY 2 cut(s) 922, 1272
PaeI GCATGC 1 cut(s) 1272
PagI TCATGA 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PctI GAATGC 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 906
PfeI GAWTC 3 cut(s) 162, 290, 368
PflMI CCANNNNNTGG 1 cut(s) 125
PleI GAGTC 2 cut(s) 678, 825
PluTI GGCGCC 1 cut(s) 609
PpsI GAGTC 2 cut(s) 678, 825
Psp124BI GAGCTC 1 cut(s) 878
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 5 cut(s) 379, 555, 607, 933, 1279
PspPI GGNCC 5 cut(s) 224, 259, 322, 377, 1215
PstI CTGCAG 1 cut(s) 1056
RsaI GTAC 3 cut(s) 70, 995, 1064
RsaNI GTAC 3 cut(s) 69, 994, 1063
SacI GAGCTC 1 cut(s) 878
SacII CCGCGG 1 cut(s) 355
SaqAI TTAA 4 cut(s) 459, 540, 761, 870
Sau3AI GATC 4 cut(s) 60, 344, 743, 1161
Sau96I GGNCC 5 cut(s) 224, 259, 322, 377, 1215
ScaI AGTACT 1 cut(s) 70
SchI GAGTC 2 cut(s) 679, 826
ScrFI CCNGG 3 cut(s) 38, 395, 396
SduI GDGCHC 2 cut(s) 795, 878
SfaNI GCATC 4 cut(s) 19, 42, 1049, 1300
SfcI CTRYAG 1 cut(s) 1052
SfoI GGCGCC 1 cut(s) 607
Sfr303I CCGCGG 1 cut(s) 355
SgrBI CCGCGG 1 cut(s) 355
SinI GGWCC 2 cut(s) 259, 1215
SmaI CCCGGG 1 cut(s) 396
SphI GCATGC 1 cut(s) 1272
Sse9I AATT 3 cut(s) 906, 1165, 1204
SspDI GGCGCC 1 cut(s) 605
SspMI CTAG 1 cut(s) 479
SstI GAGCTC 1 cut(s) 878
StyD4I CCNGG 3 cut(s) 36, 393, 394
StyI CCWWGG 2 cut(s) 1218, 1227
TaaI ACNGT 3 cut(s) 313, 768, 939
TaiI ACGT 1 cut(s) 538
TaqI TCGA 3 cut(s) 815, 853, 1043
TasI AATT 3 cut(s) 906, 1165, 1204
TatI WGTACW 2 cut(s) 68, 993
TauI GCSGC 5 cut(s) 357, 408, 422, 512, 1268
TfiI GAWTC 3 cut(s) 162, 290, 368
Tru1I TTAA 4 cut(s) 459, 540, 761, 870
Tru9I TTAA 4 cut(s) 459, 540, 761, 870
TscAI CASTG 3 cut(s) 172, 244, 1061
TseFI GTSAC 3 cut(s) 516, 592, 671
TseI GCWGC 6 cut(s) 190, 494, 797, 836, 1110, 1223
Tsp45I GTSAC 3 cut(s) 516, 592, 671
TspMI CCCGGG 1 cut(s) 394
TspRI CASTG 3 cut(s) 172, 244, 1061
Van91I CCANNNNNTGG 1 cut(s) 125
VpaK11BI GGWCC 2 cut(s) 259, 1215
XceI RCATGY 2 cut(s) 922, 1272
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
XmaI CCCGGG 1 cut(s) 394
XmnI GAANNNNTTC 1 cut(s) 906
XspI CTAG 1 cut(s) 479
ZrmI AGTACT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.