Prupe.6G273100_v2.0.a1

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
25829775 .. 25831540
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G273100.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 1341 bp
ATGAGTGAATCCGGAGTGGAAATTAAGGGAACCAGAAGAGCAAGCTATGAAAGACAATGGTCCATCAAGTGGCCTGCAGATACATTCGACGAGGTCGCAACATTCGACAACTTGAGCATCTTTCATGTTCCAAACAAACTTCGAAAAGTCGACGACAATGCCTACAGCCCTCGCATTATCTCAATCGGACCTTACCATCGTAAAAAAGGCAACCATGAGCTTGTCACAATGATAGAGCACAAGTGCCGTTACATGCGATACTTCTTTGACCAAATCAAAGATCCTCAAGAGAGCCTCCAAGTCCCACTTGAGTTCCATTTTCCGGTCTACAATCTAGACACAACGGTTCGCCGGAGCTACGCTGGGGGTGCTCGGGACCATGATGCCGAAAGCCTTGAACACATGGTGTCGTTTGATGGCATTTTCATATTGGAGCTCTTCCTCAGGTATGACCAATATTGCAAAAAAGTTCCCCTAATAGACCAATCTGATGCAATTTTCAACAATGCTTGGATGATCCCCGCCCTTAGGCGTGATCTCACATTGCTCGAAAACCAGATTCCCTTCTTTGTTCTACAAGAACTGTACGACGTTGTCAAGCCTCGAATCGTTAACTACAAGCCGCCACACTCCATCACTTGCCTTGCTCTTAATTTTTTCGAACCTATGAACGAAAAGGAAATGATAAAAGATGAGCCTGAGGGAACAGAGTACAAGCATTTGCTTGATCTCTTGCACAAATTGTACCACCCAGCTTCATGCCTTCTTAAAGACGAACCGCGAAGCAATTTCGAAAATTGGGGTTTCGATTTCTGCGCTTGTGATCTTTTAGAGGCTGGACTTGTGTTTCTATGTGACTCGGACCACTCCTATAACATAACTTTCACTAAAGGAGTGATGAGAATTCCACAAGTGTATATTGACGACAGAACAACTTCACTGTTGAGAAACCTGATTGCTTATGAGCAATGCAGCCTCAGCAGCACGCAGCACATCACATCCTACGCCATCCTCATGAAGAGCCTCATCCGTTCGCCGCATGATGTTACGTTACTTAGGGAACAAGGCATCATGAACCAGAATTGGATCAAGGACGAAGAGTATTTGACCTACTTCAATGGAATTCTAGATGAAGTTGTTGTGAAAGACTTTTGTTTTGGTAAGCTGTGTACGCAAGTGAATGCCTACGCTAGCAAGTACTGGTTTCGGAGACGGGTGAGGTGCCTGTATAACACTTATTTCTCTACTGCTTGGAGTATGATTTCGTTCGTTGCTGCGGTTTGTCTTTTTGTTCTTACTATTGCACAAACGTACTTCGCCATGCACCAAGCTCATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

447

Amino Acids

52.35

Weight (kDa)

6.07

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1221
AccB7I CCANNNNNTGG 1 cut(s) 69
AccI GTMKAC 2 cut(s) 150, 327
AccII CGCG 1 cut(s) 781
AccIII TCCGGA 1 cut(s) 11
AciI CCGC 5 cut(s) 522, 623, 779, 1037, 1277
AclWI GGATC 3 cut(s) 275, 511, 1094
AcsI RAATTY 2 cut(s) 903, 1122
AdeI CACNNNGTG 1 cut(s) 406
AfaI GTAC 6 cut(s) 587, 713, 746, 1171, 1199, 1313
AfiI CCNNNNNNNGG 3 cut(s) 69, 322, 528
AgsI TTSAA 3 cut(s) 398, 502, 1117
AluBI AGCT 7 cut(s) 45, 220, 357, 436, 755, 1165, 1331
AluI AGCT 7 cut(s) 45, 220, 357, 436, 755, 1165, 1331
Alw21I GWGCWC 3 cut(s) 240, 373, 438
Alw26I GTCTC 1 cut(s) 1204
AlwI GGATC 3 cut(s) 275, 511, 1094
Ama87I CYCGRG 1 cut(s) 372
Aor13HI TCCGGA 1 cut(s) 11
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 4 cut(s) 972, 981, 988, 1274
ApoI RAATTY 2 cut(s) 903, 1122
ArsI GACNNNNNNTTYG 2 cut(s) 1139, 1171
Asp700I GAANNNNTTC 1 cut(s) 934
AspLEI GCGC 1 cut(s) 818
AspS9I GGNCC 4 cut(s) 60, 188, 376, 862
AsuHPI GGTGA 1 cut(s) 1228
AsuII TTCGAA 3 cut(s) 142, 660, 792
AsuNHI GCTAGC 1 cut(s) 1190
AvaI CYCGRG 1 cut(s) 372
AvaII GGWCC 4 cut(s) 60, 188, 376, 862
AxyI CCTNAGG 3 cut(s) 443, 527, 699
BanI GGYRCC 1 cut(s) 1221
BanII GRGCYC 1 cut(s) 438
Bbv12I GWGCWC 3 cut(s) 240, 373, 438
BbvCI CCTCAGC 1 cut(s) 977
BbvI GCAGC 4 cut(s) 984, 993, 1000, 1261
BccI CCATC 5 cut(s) 71, 204, 410, 641, 1016
BceAI ACGGC 1 cut(s) 231
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BcoDI GTCTC 1 cut(s) 1204
BfaI CTAG 3 cut(s) 335, 1127, 1191
BfmI CTRYAG 2 cut(s) 75, 163
BisI GCNGC 6 cut(s) 623, 973, 982, 989, 1037, 1275
BlsI GCNGC 6 cut(s) 624, 974, 983, 990, 1038, 1276
BmcAI AGTACT 1 cut(s) 1199
Bme18I GGWCC 4 cut(s) 60, 188, 376, 862
BmeT110I CYCGRG 1 cut(s) 372
BmgT120I GGNCC 4 cut(s) 60, 188, 376, 862
BmiI GGNNCC 3 cut(s) 31, 377, 1223
BmsI GCATC 4 cut(s) 126, 373, 481, 1077
BmtI GCTAGC 1 cut(s) 1194
BoxI GACNNNNGTC 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 977
Bpu14I TTCGAA 3 cut(s) 142, 660, 792
BpuEI CTTGAG 3 cut(s) 133, 270, 329
BsaWI WCCGGW 2 cut(s) 11, 322
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 322, 528
Bse1I ACTGG 1 cut(s) 1205
Bse21I CCTNAGG 3 cut(s) 443, 527, 699
Bse3DI GCAATG 2 cut(s) 542, 974
BseAI TCCGGA 1 cut(s) 11
BseGI GGATG 4 cut(s) 519, 998, 1008, 1026
BseLI CCNNNNNNNGG 3 cut(s) 69, 322, 528
BseMI GCAATG 2 cut(s) 542, 974
BseMII CTCAG 3 cut(s) 457, 690, 991
BseNI ACTGG 1 cut(s) 1205
BseXI GCAGC 4 cut(s) 984, 993, 1000, 1261
BseYI CCCAGC 2 cut(s) 362, 751
Bsh1236I CGCG 1 cut(s) 781
BshFI GGCC 1 cut(s) 73
BshNI GGYRCC 1 cut(s) 1221
BsiHKAI GWGCWC 3 cut(s) 240, 373, 438
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 3 cut(s) 12, 323, 352
BslFI GGGAC 2 cut(s) 287, 389
BslI CCNNNNNNNGG 3 cut(s) 69, 322, 528
BsmAI GTCTC 1 cut(s) 1204
BsmBI CGTCTC 1 cut(s) 1204
BsmFI GGGAC 2 cut(s) 287, 389
BsmI GAATGC 1 cut(s) 1186
BsnI GGCC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 372
Bsp119I TTCGAA 3 cut(s) 142, 660, 792
Bsp1286I GDGCHC 3 cut(s) 240, 373, 438
Bsp13I TCCGGA 1 cut(s) 11
Bsp143I GATC 6 cut(s) 280, 516, 535, 727, 823, 1086
BspACI CCGC 5 cut(s) 522, 623, 779, 1037, 1277
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 3 cut(s) 456, 691, 990
BspEI TCCGGA 1 cut(s) 11
BspFNI CGCG 1 cut(s) 781
BspHI TCATGA 2 cut(s) 1014, 1071
BspLI GGNNCC 3 cut(s) 31, 377, 1223
BspMAI CTGCAG 1 cut(s) 79
BspOI GCTAGC 1 cut(s) 1194
BspPI GGATC 3 cut(s) 275, 511, 1094
BspQI GCTCTTC 3 cut(s) 31, 443, 1013
BspT104I TTCGAA 3 cut(s) 142, 660, 792
BspT107I GGYRCC 1 cut(s) 1221
BsrDI GCAATG 2 cut(s) 542, 974
BsrI ACTGG 1 cut(s) 1205
BssMI GATC 6 cut(s) 280, 516, 535, 727, 823, 1086
Bst4CI ACNGT 3 cut(s) 346, 585, 942
Bst6I CTCTTC 4 cut(s) 31, 443, 1013, 1092
BstBI TTCGAA 3 cut(s) 142, 660, 792
BstC8I GCNNGC 4 cut(s) 43, 75, 986, 1192
BstDEI CTNAG 5 cut(s) 443, 527, 699, 977, 1055
BstF5I GGATG 4 cut(s) 519, 998, 1008, 1026
BstFNI CGCG 1 cut(s) 781
BstHHI GCGC 1 cut(s) 818
BstKTI GATC 6 cut(s) 283, 519, 538, 730, 826, 1089
BstMAI GTCTC 1 cut(s) 1204
BstMBI GATC 6 cut(s) 280, 516, 535, 727, 823, 1086
BstMWI GCNNNNNNNGC 4 cut(s) 368, 978, 981, 1171
BstNSI RCATGY 1 cut(s) 256
BstPAI GACNNNNGTC 1 cut(s) 58
BstSFI CTRYAG 2 cut(s) 75, 163
BstUI CGCG 1 cut(s) 781
BstV1I GCAGC 4 cut(s) 984, 993, 1000, 1261
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
Bsu36I CCTNAGG 3 cut(s) 443, 527, 699
BsuRI GGCC 1 cut(s) 73
BtsCI GGATG 4 cut(s) 519, 998, 1008, 1026
BtsIMutI CAGTG 1 cut(s) 938
Cac8I GCNNGC 4 cut(s) 43, 75, 986, 1192
CciI TCATGA 2 cut(s) 1014, 1071
CfoI GCGC 1 cut(s) 818
Cfr13I GGNCC 4 cut(s) 60, 188, 376, 862
Csp6I GTAC 6 cut(s) 586, 712, 745, 1170, 1198, 1312
CviQI GTAC 6 cut(s) 586, 712, 745, 1170, 1198, 1312
DdeI CTNAG 5 cut(s) 443, 527, 699, 977, 1055
DpnI GATC 6 cut(s) 282, 518, 537, 729, 825, 1088
DpnII GATC 6 cut(s) 280, 516, 535, 727, 823, 1086
DraIII CACNNNGTG 1 cut(s) 406
Eam1104I CTCTTC 4 cut(s) 31, 443, 1013, 1092
EarI CTCTTC 4 cut(s) 31, 443, 1013, 1092
Ecl136II GAGCTC 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 438
Eco47I GGWCC 4 cut(s) 60, 188, 376, 862
Eco53kI GAGCTC 1 cut(s) 436
Eco81I CCTNAGG 3 cut(s) 443, 527, 699
Eco88I CYCGRG 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 436
EcoRI GAATTC 2 cut(s) 903, 1122
EcoT38I GRGCYC 1 cut(s) 438
Esp3I CGTCTC 1 cut(s) 1204
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 2 cut(s) 287, 389
FauI CCCGC 1 cut(s) 529
FblI GTMKAC 2 cut(s) 150, 327
Fnu4HI GCNGC 6 cut(s) 623, 973, 982, 989, 1037, 1275
FokI GGATG 4 cut(s) 526, 985, 995, 1013
FriOI GRGCYC 1 cut(s) 438
Fsp4HI GCNGC 6 cut(s) 623, 973, 982, 989, 1037, 1275
FspBI CTAG 3 cut(s) 335, 1127, 1191
GlaI GCGC 1 cut(s) 817
GluI GCNGC 6 cut(s) 623, 973, 982, 989, 1037, 1275
GsaI CCCAGC 2 cut(s) 366, 755
HaeIII GGCC 1 cut(s) 73
HapII CCGG 3 cut(s) 12, 323, 352
HhaI GCGC 1 cut(s) 818
Hin6I GCGC 1 cut(s) 816
HinP1I GCGC 1 cut(s) 816
HincII GTYRAC 2 cut(s) 151, 613
HindII GTYRAC 2 cut(s) 151, 613
HinfI GANTC 4 cut(s) 8, 559, 606, 857
HpaI GTTAAC 1 cut(s) 613
HpaII CCGG 3 cut(s) 12, 323, 352
HphI GGTGA 1 cut(s) 1228
Hpy166II GTNNAC 4 cut(s) 151, 328, 613, 1170
Hpy188I TCNGA 4 cut(s) 188, 490, 862, 1209
Hpy188III TCNNGA 7 cut(s) 12, 287, 335, 374, 1015, 1072, 1127
Hpy8I GTNNAC 4 cut(s) 151, 328, 613, 1170
Hpy99I CGWCG 3 cut(s) 92, 155, 593
HpyAV CCTTC 2 cut(s) 574, 773
HpyCH4III ACNGT 3 cut(s) 346, 585, 942
HpyCH4IV ACGT 3 cut(s) 591, 1049, 1310
HpyCH4V TGCA 7 cut(s) 77, 462, 494, 736, 972, 1304, 1324
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 978, 981, 1171
HpyF3I CTNAG 5 cut(s) 443, 527, 699, 977, 1055
HpySE526I ACGT 3 cut(s) 591, 1049, 1310
HspAI GCGC 1 cut(s) 816
Kpn2I TCCGGA 1 cut(s) 11
KspAI GTTAAC 1 cut(s) 613
Kzo9I GATC 6 cut(s) 280, 516, 535, 727, 823, 1086
LguI GCTCTTC 3 cut(s) 31, 443, 1013
LmnI GCTCC 2 cut(s) 354, 433
Lsp1109I GCAGC 4 cut(s) 984, 993, 1000, 1261
LweI GCATC 4 cut(s) 126, 373, 481, 1077
MaeI CTAG 3 cut(s) 335, 1127, 1191
MaeII ACGT 3 cut(s) 591, 1049, 1310
MaeIII GTNAC 5 cut(s) 223, 248, 854, 1045, 1050
MalI GATC 6 cut(s) 282, 518, 537, 729, 825, 1088
MboI GATC 6 cut(s) 280, 516, 535, 727, 823, 1086
MboII GAAGA 4 cut(s) 48, 430, 1030, 1109
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 3 cut(s) 240, 373, 438
MluCI AATT 9 cut(s) 21, 495, 652, 740, 787, 796, 903, 1081, 1122
MlyI GAGTC 1 cut(s) 851
MroI TCCGGA 1 cut(s) 11
MroXI GAANNNNTTC 1 cut(s) 934
MseI TTAA 4 cut(s) 24, 612, 651, 768
MslI CAYNNNNRTG 1 cut(s) 1013
MspI CCGG 3 cut(s) 12, 323, 352
Mva1269I GAATGC 1 cut(s) 1186
MvnI CGCG 1 cut(s) 781
MwoI GCNNNNNNNGC 4 cut(s) 368, 978, 981, 1171
NdeII GATC 6 cut(s) 280, 516, 535, 727, 823, 1086
NheI GCTAGC 1 cut(s) 1190
NlaIV GGNNCC 3 cut(s) 31, 377, 1223
NmuCI GTSAC 2 cut(s) 223, 854
NspI RCATGY 1 cut(s) 256
NspV TTCGAA 3 cut(s) 142, 660, 792
PagI TCATGA 2 cut(s) 1014, 1071
PciSI GCTCTTC 3 cut(s) 31, 443, 1013
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PctI GAATGC 1 cut(s) 1186
PdmI GAANNNNTTC 1 cut(s) 934
PfeI GAWTC 3 cut(s) 8, 559, 606
PflFI GACNNNGTC 2 cut(s) 92, 593
PflMI CCANNNNNTGG 1 cut(s) 69
PkrI GCNGC 6 cut(s) 624, 974, 983, 990, 1038, 1276
PleI GAGTC 1 cut(s) 851
PpsI GAGTC 1 cut(s) 851
PshAI GACNNNNGTC 1 cut(s) 58
Psp124BI GAGCTC 1 cut(s) 438
PspFI CCCAGC 2 cut(s) 362, 751
PspN4I GGNNCC 3 cut(s) 31, 377, 1223
PspPI GGNCC 4 cut(s) 60, 188, 376, 862
PstI CTGCAG 1 cut(s) 79
PsuI RGATCY 1 cut(s) 280
PsyI GACNNNGTC 2 cut(s) 92, 593
RsaI GTAC 6 cut(s) 587, 713, 746, 1171, 1199, 1313
RsaNI GTAC 6 cut(s) 586, 712, 745, 1170, 1198, 1312
RseI CAYNNNNRTG 1 cut(s) 1013
SacI GAGCTC 1 cut(s) 438
SalI GTCGAC 1 cut(s) 149
SapI GCTCTTC 3 cut(s) 31, 443, 1013
SaqAI TTAA 4 cut(s) 24, 612, 651, 768
SatI GCNGC 6 cut(s) 623, 973, 982, 989, 1037, 1275
Sau3AI GATC 6 cut(s) 280, 516, 535, 727, 823, 1086
Sau96I GGNCC 4 cut(s) 60, 188, 376, 862
ScaI AGTACT 1 cut(s) 1199
SchI GAGTC 1 cut(s) 851
SduI GDGCHC 3 cut(s) 240, 373, 438
SfaNI GCATC 4 cut(s) 126, 373, 481, 1077
SfcI CTRYAG 2 cut(s) 75, 163
SfuI TTCGAA 3 cut(s) 142, 660, 792
SinI GGWCC 4 cut(s) 60, 188, 376, 862
SmiMI CAYNNNNRTG 1 cut(s) 1013
SmlI CTYRAG 3 cut(s) 112, 285, 308
SmoI CTYRAG 3 cut(s) 112, 285, 308
Sse9I AATT 9 cut(s) 21, 495, 652, 740, 787, 796, 903, 1081, 1122
SsiI CCGC 5 cut(s) 522, 623, 779, 1037, 1277
SspI AATATT 1 cut(s) 458
SspMI CTAG 3 cut(s) 335, 1127, 1191
SstI GAGCTC 1 cut(s) 438
TaaI ACNGT 3 cut(s) 346, 585, 942
TaiI ACGT 3 cut(s) 594, 1052, 1313
TaqI TCGA 9 cut(s) 87, 105, 142, 150, 549, 604, 660, 792, 807
TasI AATT 9 cut(s) 21, 495, 652, 740, 787, 796, 903, 1081, 1122
TatI WGTACW 2 cut(s) 711, 1197
TauI GCSGC 2 cut(s) 625, 1039
TfiI GAWTC 3 cut(s) 8, 559, 606
Tru1I TTAA 4 cut(s) 24, 612, 651, 768
Tru9I TTAA 4 cut(s) 24, 612, 651, 768
TscAI CASTG 1 cut(s) 945
TseFI GTSAC 2 cut(s) 223, 854
TseI GCWGC 4 cut(s) 972, 981, 988, 1274
Tsp45I GTSAC 2 cut(s) 223, 854
TspDTI ATGAA 8 cut(s) 63, 113, 415, 683, 747, 1031, 1088, 1146
TspGWI ACGGA 1 cut(s) 1019
TspRI CASTG 1 cut(s) 945
Tth111I GACNNNGTC 2 cut(s) 92, 593
Van91I CCANNNNNTGG 1 cut(s) 69
VpaK11BI GGWCC 4 cut(s) 60, 188, 376, 862
XapI RAATTY 2 cut(s) 903, 1122
XbaI TCTAGA 2 cut(s) 334, 1126
XceI RCATGY 1 cut(s) 256
XmiI GTMKAC 2 cut(s) 150, 327
XmnI GAANNNNTTC 1 cut(s) 934
XspI CTAG 3 cut(s) 335, 1127, 1191
ZrmI AGTACT 1 cut(s) 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.