Prupe.6G274000_v2.0.a1

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
25899451 .. 25901045
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G274000.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 1371 bp
ATGAGCAACTCAGGAGAGGAAACGGAAGCAAGCTATGAGCGACAGTGCTATAACAAAGTGGAGAAAGCGTCAGAGGCATTGAACATCTTTGAAGTTCCAAATAAACTTCGAAAAGTGAAGGAGGATGCCTATAGCCCTCGCCTTGTCTCAATTGGGATTTACCATCGGCAAAAGCATGAGCTTGCAGCTATGCAAGAGCATAAATATCGTTACAGGAGATTCTTTGAGAAGCGTTTGAATGAGTCTGCCACATCCCTTAAGAGCTTTGAAGAGTTTTTCATTCATCCCTTAGGTTACAAGGTTGCAAGCAGCTACGTTGGAAGAAGGAGTACTAGCACACGTGACATAGTACTTGATGGCGTCTTCATATTGGAACTTTTCCTCAGGTATTATCAACACTACAACTTAAACATGATGTTAGAAGAGCAATCTGATGACCCAATATTCAATACTATCTGGATAATTCCAGCACTTCGCCAGGATCTAGCTTTAGTTGAAAACCAGATCCCCTTTTTTATTCTCCAAACTCTGTTTGAGGCTATCAAGCCTCATCTCAAGGCCAACGGCAAGCAAGCACCGAACTCGCTCACTAGCCTTGCTCTTCATTTCTTTGAACCTGCAGCTATGAAGAACCAAAAGGCAATAATAAAAGGAGTTGATGATCCTCCTGGCGGCACAGAGGGCTACAAGCATCTGCTTGATCTCTTGCACAAATTCTATCTCCCAAGTCAGCCTAAGAGTACTAATAATAAGCAGCACCCTGCTGGGGCTGGTGATTCCTCAATTATCAACATCACCAATATTGATATCCCTGGAAGTGGAAGCTATAACAATTGGGGATTCAATTATTGCGCTTCACAACTTTTGGAATCTGGGATCGAGATTGAAAGACAGTCAAGCGAGAAACACTTGCTGAACATAACTTTCAGCAAGGGAGTGATCAGAATCCCATCATTGTTCATAGACGACAACATTTCACTCTTGAGAAACCTGATTGCCTACGAGCAGTACAGCATCAGCAGTAATCACATCACCTCATATCCCATCCTCCTGAAAAGCCTCATCCGTTCCTCAAAGGACATCAAAATACTTCGGCAAAGAAGGATCATAAATTCCAATTGGATTGACGATGAAGTATATTTGGCTCAATGCCACAGTATTCTAGATGAGGTTGTTGTCAAGGACTTCTGTTTTGCTGACTTGTGCAACCAAGTGAACGCATACGCTCGTAAATTCTGGTTTCGCAGACGTTTGAAGTCCCTCTATCGCACTTATTTCTCAACTGCATGGAGCTTGATATCGTTCATTGCTGCGTTTTGCCTTTTCGTTCTAACTGTCATACAAACATACTATGCCATTCACCCTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

457

Amino Acids

52.76

Weight (kDa)

8.86

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 625
AciI CCGC 1 cut(s) 672
AclWI GGATC 5 cut(s) 489, 499, 656, 884, 1112
AcsI RAATTY 3 cut(s) 713, 1111, 1232
AcvI CACGTG 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 4 cut(s) 331, 351, 742, 1010
AfiI CCNNNNNNNGG 3 cut(s) 671, 766, 818
AflII CTTAAG 1 cut(s) 257
AflIII ACRYGT 1 cut(s) 338
AjnI CCWGG 3 cut(s) 477, 667, 811
AluBI AGCT 9 cut(s) 33, 181, 188, 264, 312, 488, 623, 825, 1293
AluI AGCT 9 cut(s) 33, 181, 188, 264, 312, 488, 623, 825, 1293
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 5 cut(s) 489, 499, 656, 884, 1112
AoxI GGCC 1 cut(s) 558
ApeKI GCWGC 5 cut(s) 185, 309, 620, 754, 1310
ApoI RAATTY 3 cut(s) 713, 1111, 1232
ArsI GACNNNNNNTTYG 2 cut(s) 1175, 1207
AspLEI GCGC 1 cut(s) 854
AsuHPI GGTGA 4 cut(s) 785, 787, 1024, 1352
AsuII TTCGAA 1 cut(s) 109
AxyI CCTNAGG 2 cut(s) 289, 383
BarI GAAGNNNNNNTAC 2 cut(s) 313, 345
BbrPI CACGTG 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 355
BbvI GCAGC 5 cut(s) 197, 321, 632, 766, 1297
BccI CCATC 4 cut(s) 171, 350, 958, 1052
BceAI ACGGC 1 cut(s) 580
BcgI CGANNNNNNTGC 4 cut(s) 188, 222, 564, 598
BciT130I CCWGG 3 cut(s) 479, 669, 813
BclI TGATCA 1 cut(s) 939
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 5 cut(s) 333, 485, 591, 1163, 1369
BfmI CTRYAG 2 cut(s) 130, 618
BfrI CTTAAG 1 cut(s) 257
BfuAI ACCTGC 1 cut(s) 625
BisI GCNGC 6 cut(s) 186, 310, 621, 673, 755, 1311
BlsI GCNGC 6 cut(s) 187, 311, 622, 674, 756, 1312
BmcAI AGTACT 3 cut(s) 331, 351, 742
Bme1390I CCNGG 3 cut(s) 479, 669, 813
BmrFI CCNGG 3 cut(s) 479, 669, 813
BmsI GCATC 3 cut(s) 115, 700, 1023
BpiI GAAGAC 1 cut(s) 355
Bpu14I TTCGAA 1 cut(s) 109
BpuEI CTTGAG 2 cut(s) 539, 1003
BsaAI YACGTR 1 cut(s) 341
BsaBI GATNNNNATC 1 cut(s) 944
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 811
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 3 cut(s) 671, 766, 818
Bse21I CCTNAGG 2 cut(s) 289, 383
Bse3DI GCAATG 1 cut(s) 1305
Bse8I GATNNNNATC 1 cut(s) 944
BseBI CCWGG 3 cut(s) 479, 669, 813
BseDI CCNNGG 1 cut(s) 811
BseGI GGATG 5 cut(s) 130, 251, 283, 1044, 1062
BseJI GATNNNNATC 1 cut(s) 944
BseLI CCNNNNNNNGG 3 cut(s) 671, 766, 818
BseMI GCAATG 1 cut(s) 1305
BseMII CTCAG 2 cut(s) 24, 397
BseXI GCAGC 5 cut(s) 197, 321, 632, 766, 1297
BseYI CCCAGC 1 cut(s) 764
BshFI GGCC 1 cut(s) 560
BslFI GGGAC 1 cut(s) 1243
BslI CCNNNNNNNGG 3 cut(s) 671, 766, 818
BsmAI GTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 1243
BsnI GGCC 1 cut(s) 560
Bsp119I TTCGAA 1 cut(s) 109
Bsp143I GATC 7 cut(s) 481, 504, 661, 700, 876, 939, 1104
BspACI CCGC 1 cut(s) 672
BspANI GGCC 1 cut(s) 560
BspCNI CTCAG 2 cut(s) 23, 396
BspMAI CTGCAG 1 cut(s) 622
BspMI ACCTGC 1 cut(s) 625
BspPI GGATC 5 cut(s) 489, 499, 656, 884, 1112
BspQI GCTCTTC 2 cut(s) 417, 606
BspT104I TTCGAA 1 cut(s) 109
BspTI CTTAAG 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 1305
BssECI CCNNGG 1 cut(s) 811
BssMI GATC 7 cut(s) 481, 504, 661, 700, 876, 939, 1104
BssNI GRCGYC 1 cut(s) 360
Bst2UI CCWGG 3 cut(s) 479, 669, 813
Bst4CI ACNGT 4 cut(s) 45, 894, 1157, 1336
Bst6I CTCTTC 3 cut(s) 264, 417, 606
BstACI GRCGYC 1 cut(s) 360
BstAFI CTTAAG 1 cut(s) 257
BstBAI YACGTR 1 cut(s) 341
BstBI TTCGAA 1 cut(s) 109
BstC8I GCNNGC 5 cut(s) 31, 183, 307, 569, 573
BstDEI CTNAG 4 cut(s) 10, 289, 383, 735
BstF5I GGATG 5 cut(s) 130, 251, 283, 1044, 1062
BstHHI GCGC 1 cut(s) 854
BstKTI GATC 7 cut(s) 484, 507, 664, 703, 879, 942, 1107
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 7 cut(s) 481, 504, 661, 700, 876, 939, 1104
BstMWI GCNNNNNNNGC 2 cut(s) 74, 681
BstNI CCWGG 3 cut(s) 479, 669, 813
BstSCI CCNGG 3 cut(s) 477, 667, 811
BstSFI CTRYAG 2 cut(s) 130, 618
BstV1I GCAGC 5 cut(s) 197, 321, 632, 766, 1297
BstV2I GAAGAC 1 cut(s) 355
BstX2I RGATCY 2 cut(s) 481, 504
BstYI RGATCY 2 cut(s) 481, 504
Bsu36I CCTNAGG 2 cut(s) 289, 383
BsuRI GGCC 1 cut(s) 560
BtsCI GGATG 5 cut(s) 130, 251, 283, 1044, 1062
BtsIMutI CAGTG 1 cut(s) 50
BveI ACCTGC 1 cut(s) 625
Cac8I GCNNGC 5 cut(s) 31, 183, 307, 569, 573
CfoI GCGC 1 cut(s) 854
CseI GACGC 2 cut(s) 57, 349
Csp6I GTAC 4 cut(s) 330, 350, 741, 1009
CviAII CATG 3 cut(s) 176, 412, 1287
CviQI GTAC 4 cut(s) 330, 350, 741, 1009
DdeI CTNAG 4 cut(s) 10, 289, 383, 735
DpnI GATC 7 cut(s) 483, 506, 663, 702, 878, 941, 1106
DpnII GATC 7 cut(s) 481, 504, 661, 700, 876, 939, 1104
Eam1104I CTCTTC 3 cut(s) 264, 417, 606
EarI CTCTTC 3 cut(s) 264, 417, 606
Eco32I GATATC 2 cut(s) 808, 1299
Eco72I CACGTG 1 cut(s) 341
Eco81I CCTNAGG 2 cut(s) 289, 383
EcoRII CCWGG 3 cut(s) 477, 667, 811
EcoRV GATATC 2 cut(s) 808, 1299
FaeI CATG 3 cut(s) 179, 415, 1290
FaqI GGGAC 1 cut(s) 1243
FatI CATG 3 cut(s) 175, 411, 1286
FbaI TGATCA 1 cut(s) 939
Fnu4HI GCNGC 6 cut(s) 186, 310, 621, 673, 755, 1311
FokI GGATG 5 cut(s) 137, 238, 270, 1031, 1049
Fsp4HI GCNGC 6 cut(s) 186, 310, 621, 673, 755, 1311
FspBI CTAG 5 cut(s) 333, 485, 591, 1163, 1369
GlaI GCGC 1 cut(s) 853
GluI GCNGC 6 cut(s) 186, 310, 621, 673, 755, 1311
GsaI CCCAGC 1 cut(s) 768
HaeIII GGCC 1 cut(s) 560
HgaI GACGC 2 cut(s) 57, 349
HhaI GCGC 1 cut(s) 854
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 3 cut(s) 179, 415, 1290
Hin6I GCGC 1 cut(s) 852
HinP1I GCGC 1 cut(s) 852
HinfI GANTC 6 cut(s) 219, 242, 776, 840, 869, 945
HphI GGTGA 4 cut(s) 785, 787, 1024, 1352
Hpy166II GTNNAC 1 cut(s) 1216
Hpy188I TCNGA 3 cut(s) 73, 433, 944
Hpy188III TCNNGA 6 cut(s) 12, 457, 880, 982, 1051, 1163
Hpy8I GTNNAC 1 cut(s) 1216
HpyAV CCTTC 3 cut(s) 112, 318, 1095
HpyCH4III ACNGT 4 cut(s) 45, 894, 1157, 1336
HpyCH4IV ACGT 3 cut(s) 315, 340, 1249
HpyCH4V TGCA 7 cut(s) 185, 193, 305, 620, 709, 1206, 1286
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 681
HpyF3I CTNAG 4 cut(s) 10, 289, 383, 735
HpySE526I ACGT 3 cut(s) 315, 340, 1249
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 3 cut(s) 179, 415, 1290
HspAI GCGC 1 cut(s) 852
Ksp22I TGATCA 1 cut(s) 939
Kzo9I GATC 7 cut(s) 481, 504, 661, 700, 876, 939, 1104
LguI GCTCTTC 2 cut(s) 417, 606
LmnI GCTCC 1 cut(s) 1290
Lsp1109I GCAGC 5 cut(s) 197, 321, 632, 766, 1297
LweI GCATC 3 cut(s) 115, 700, 1023
MaeI CTAG 5 cut(s) 333, 485, 591, 1163, 1369
MaeII ACGT 3 cut(s) 315, 340, 1249
MaeIII GTNAC 3 cut(s) 209, 293, 341
MalI GATC 7 cut(s) 483, 506, 663, 702, 878, 941, 1106
MboI GATC 7 cut(s) 481, 504, 661, 700, 876, 939, 1104
MboII GAAGA 6 cut(s) 281, 333, 355, 434, 593, 640
MfeI CAATTG 3 cut(s) 150, 832, 1117
MflI RGATCY 2 cut(s) 481, 504
MluCI AATT 9 cut(s) 150, 462, 713, 783, 832, 844, 1111, 1117, 1232
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 298
MseI TTAA 2 cut(s) 258, 407
MspCI CTTAAG 1 cut(s) 257
MspR9I CCNGG 3 cut(s) 479, 669, 813
MunI CAATTG 3 cut(s) 150, 832, 1117
MvaI CCWGG 3 cut(s) 479, 669, 813
MwoI GCNNNNNNNGC 2 cut(s) 74, 681
NdeII GATC 7 cut(s) 481, 504, 661, 700, 876, 939, 1104
NlaIII CATG 3 cut(s) 179, 415, 1290
NmuCI GTSAC 1 cut(s) 341
NspV TTCGAA 1 cut(s) 109
PciSI GCTCTTC 2 cut(s) 417, 606
PfeI GAWTC 5 cut(s) 219, 776, 840, 869, 945
PkrI GCNGC 6 cut(s) 187, 311, 622, 674, 756, 1312
PleI GAGTC 1 cut(s) 250
PmaCI CACGTG 1 cut(s) 341
PmlI CACGTG 1 cut(s) 341
PpsI GAGTC 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 341
Psp6I CCWGG 3 cut(s) 477, 667, 811
PspCI CACGTG 1 cut(s) 341
PspFI CCCAGC 1 cut(s) 764
PspGI CCWGG 3 cut(s) 477, 667, 811
PstI CTGCAG 1 cut(s) 622
PsuI RGATCY 2 cut(s) 481, 504
RsaI GTAC 4 cut(s) 331, 351, 742, 1010
RsaNI GTAC 4 cut(s) 330, 350, 741, 1009
SapI GCTCTTC 2 cut(s) 417, 606
SaqAI TTAA 2 cut(s) 258, 407
SatI GCNGC 6 cut(s) 186, 310, 621, 673, 755, 1311
Sau3AI GATC 7 cut(s) 481, 504, 661, 700, 876, 939, 1104
ScaI AGTACT 3 cut(s) 331, 351, 742
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 3 cut(s) 479, 669, 813
SfaNI GCATC 3 cut(s) 115, 700, 1023
SfcI CTRYAG 2 cut(s) 130, 618
SfuI TTCGAA 1 cut(s) 109
SmlI CTYRAG 3 cut(s) 257, 554, 982
SmoI CTYRAG 3 cut(s) 257, 554, 982
Sse9I AATT 9 cut(s) 150, 462, 713, 783, 832, 844, 1111, 1117, 1232
SsiI CCGC 1 cut(s) 672
SspI AATATT 2 cut(s) 444, 802
SspMI CTAG 5 cut(s) 333, 485, 591, 1163, 1369
StyD4I CCNGG 3 cut(s) 477, 667, 811
TaaI ACNGT 4 cut(s) 45, 894, 1157, 1336
TaiI ACGT 3 cut(s) 318, 343, 1252
TaqI TCGA 2 cut(s) 109, 879
TasI AATT 9 cut(s) 150, 462, 713, 783, 832, 844, 1111, 1117, 1232
TatI WGTACW 4 cut(s) 329, 349, 740, 1008
TauI GCSGC 1 cut(s) 675
TfiI GAWTC 5 cut(s) 219, 776, 840, 869, 945
Tru1I TTAA 2 cut(s) 258, 407
Tru9I TTAA 2 cut(s) 258, 407
TscAI CASTG 1 cut(s) 50
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 5 cut(s) 185, 309, 620, 754, 1310
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 8 cut(s) 268, 272, 355, 593, 641, 949, 1146, 1294
TspGWI ACGGA 2 cut(s) 38, 1055
TspRI CASTG 1 cut(s) 50
Vha464I CTTAAG 1 cut(s) 257
XapI RAATTY 3 cut(s) 713, 1111, 1232
XbaI TCTAGA 1 cut(s) 1162
XspI CTAG 5 cut(s) 333, 485, 591, 1163, 1369
ZrmI AGTACT 3 cut(s) 331, 351, 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.