Prupe.6G290100_v2.0.a1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
26778229 .. 26780042
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G290100.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 981 bp
ATGGGCTGCTACCAAGCCTTCTCCTTCAAACTCTCCTTTTCACTTGTTCTTCTCCTCATTGTTGGTGTTGGACTTGGAGGAGTAGCTTCTGCTGAGTTATCCGCTAGTTTTTATGACAAAAACTGCCCCAATGCCCTGTCCACAATCAAATCTGCAGTGGACTCAGCGGTGTACAAAGAAGCTCGCATGGGAGCTTCCTTGCTCCGTCTGCATTTCCACGATTGTTTTGTTAACGGATGTGATGCATCGTTGCTTTTGGACGACACGGCAACCTTTAAAGGAGAGAAAACGTCGGTGGCCAATGCCAATTCTCTCAGAGGATTTGAGGTAATCGACAATATCAAAGCTGAATTGGAGAGCCTCTGCCCCAACATGGTCTCCTGTGCTGACATCCTGGCCGTTGCTGCCAGGGATTCCATTGTTGCACTGGGTGGACCCACTTACACAGTGGCATTGGGCAGAAGAGACTCCACCGCTGCAAACGTGACCGCAACGGAGGACCTCCCCAGCCCCTTCGTCAATGTGACCAAGCTAATTGCGGCTTTCTCTAAAAAGGGTTTCACCGTGAAAGAAATGGTGGCTCTTTCAGGTGCTCACACTATAGGACAAGCGAGGTGTGCATTCTTCCGTGGACGGCTTTACAACGACACCGACATCAACGCTTCGTTTGCAGCAGCTGTGAGAGCAAAGTGCCCAGGCAGTGGTGGCTCAGGCGACAACAATATGTCTGAGCTTGACGTCACAACCCCGACCACGTTCGACAGTTCCTACTTCAAGAATGTGATGAGCCAGAAGGGGCTGCTGCACTCAGACCAGCAGCTATACAGTGGTGGGTTCACAAAGACCGCGGTGGATGCGTATGCCAATAATGCTGCCAGTTTTATGGAAGACTTTGCCGAAGCGATGAACAAGATGGGACGCCTTAGCCCTCTGACGGGCTCCATTGGTCAAATTAGAACAAACTGTCGAAAGGTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

327

Amino Acids

34.53

Weight (kDa)

6.88

Isoelectric Point (pI)

27.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 741
AccB7I CCANNNNNTGG 1 cut(s) 701
AccII CGCG 1 cut(s) 848
AciI CCGC 7 cut(s) 102, 167, 474, 489, 539, 846, 848
AcoI YGGCCR 2 cut(s) 297, 396
AcyI GRCGYC 2 cut(s) 738, 919
AdeI CACNNNGTG 1 cut(s) 431
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 4 cut(s) 373, 701, 934, 935
AgsI TTSAA 2 cut(s) 28, 775
AjnI CCWGG 3 cut(s) 393, 407, 694
AluBI AGCT 8 cut(s) 86, 182, 194, 347, 532, 677, 733, 820
AluI AGCT 8 cut(s) 86, 182, 194, 347, 532, 677, 733, 820
Alw21I GWGCWC 1 cut(s) 595
Alw26I GTCTC 2 cut(s) 382, 459
AlwNI CAGNNNCTG 1 cut(s) 677
AoxI GGCC 2 cut(s) 297, 396
ApeKI GCWGC 9 cut(s) 6, 404, 476, 671, 674, 799, 802, 817, 872
AspS9I GGNCC 2 cut(s) 434, 499
AsuHPI GGTGA 1 cut(s) 553
AvaII GGWCC 2 cut(s) 434, 499
BaeGI GKGCMC 1 cut(s) 695
BalI TGGCCA 1 cut(s) 299
BanII GRGCYC 1 cut(s) 941
BbsI GAAGAC 1 cut(s) 894
Bbv12I GWGCWC 1 cut(s) 595
BbvI GCAGC 8 cut(s) 391, 463, 683, 686, 786, 789, 829, 859
BccI CCATC 1 cut(s) 907
BceAI ACGGC 3 cut(s) 282, 383, 650
BciT130I CCWGG 3 cut(s) 395, 409, 696
BcoDI GTCTC 2 cut(s) 382, 459
BfaI CTAG 2 cut(s) 105, 979
BfmI CTRYAG 2 cut(s) 153, 600
Bme1390I CCNGG 3 cut(s) 395, 409, 696
Bme18I GGWCC 2 cut(s) 434, 499
BmgT120I GGNCC 2 cut(s) 434, 499
BmiI GGNNCC 2 cut(s) 436, 940
BmrFI CCNGG 3 cut(s) 395, 409, 696
BmrI ACTGGG 1 cut(s) 437
BmsI GCATC 3 cut(s) 232, 254, 844
BmuI ACTGGG 1 cut(s) 437
BpiI GAAGAC 1 cut(s) 894
Bpu10I CCTNAGC 2 cut(s) 709, 923
BsaHI GRCGYC 2 cut(s) 738, 919
BsaI GGTCTC 1 cut(s) 382
BsaJI CCNNGG 4 cut(s) 408, 628, 694, 846
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bsc4I CCNNNNNNNGG 4 cut(s) 373, 701, 934, 935
Bse1I ACTGG 2 cut(s) 432, 876
BseBI CCWGG 3 cut(s) 395, 409, 696
BseDI CCNNGG 4 cut(s) 408, 628, 694, 846
BseGI GGATG 3 cut(s) 242, 390, 859
BseLI CCNNNNNNNGG 4 cut(s) 373, 701, 934, 935
BseMII CTCAG 6 cut(s) 84, 177, 328, 720, 723, 822
BseNI ACTGG 2 cut(s) 432, 876
BseRI GAGGAG 2 cut(s) 44, 93
BseSI GKGCMC 1 cut(s) 695
BseXI GCAGC 8 cut(s) 391, 463, 683, 686, 786, 789, 829, 859
BseYI CCCAGC 1 cut(s) 506
BsgI GTGCAG 1 cut(s) 788
Bsh1236I CGCG 1 cut(s) 848
BshFI GGCC 2 cut(s) 299, 398
BsiHKAI GWGCWC 1 cut(s) 595
BslFI GGGAC 1 cut(s) 930
BslI CCNNNNNNNGG 4 cut(s) 373, 701, 934, 935
BsmAI GTCTC 2 cut(s) 382, 459
BsmFI GGGAC 1 cut(s) 930
BsmI GAATGC 1 cut(s) 620
BsnI GGCC 2 cut(s) 299, 398
Bso31I GGTCTC 1 cut(s) 382
Bsp1286I GDGCHC 3 cut(s) 595, 695, 941
Bsp1407I TGTACA 1 cut(s) 171
BspACI CCGC 7 cut(s) 102, 167, 474, 489, 539, 846, 848
BspANI GGCC 2 cut(s) 299, 398
BspCNI CTCAG 6 cut(s) 85, 176, 327, 721, 722, 821
BspFNI CGCG 1 cut(s) 848
BspLI GGNNCC 2 cut(s) 436, 940
BspMAI CTGCAG 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 382
BsrGI TGTACA 1 cut(s) 171
BsrI ACTGG 2 cut(s) 432, 876
BssECI CCNNGG 4 cut(s) 408, 628, 694, 846
BssNI GRCGYC 2 cut(s) 738, 919
Bst2UI CCWGG 3 cut(s) 395, 409, 696
Bst4CI ACNGT 5 cut(s) 448, 565, 764, 827, 965
Bst6I CTCTTC 1 cut(s) 457
BstACI GRCGYC 2 cut(s) 738, 919
BstAUI TGTACA 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 7 cut(s) 93, 163, 314, 709, 729, 808, 923
BstDSI CCRYGG 2 cut(s) 628, 846
BstF5I GGATG 3 cut(s) 242, 390, 859
BstFNI CGCG 1 cut(s) 848
BstMAI GTCTC 2 cut(s) 382, 459
BstMWI GCNNNNNNNGC 8 cut(s) 208, 404, 617, 668, 683, 705, 854, 869
BstNI CCWGG 3 cut(s) 395, 409, 696
BstSCI CCNGG 3 cut(s) 393, 407, 694
BstSFI CTRYAG 2 cut(s) 153, 600
BstSLI GKGCMC 1 cut(s) 695
BstUI CGCG 1 cut(s) 848
BstV1I GCAGC 8 cut(s) 391, 463, 683, 686, 786, 789, 829, 859
BstV2I GAAGAC 1 cut(s) 894
BstXI CCANNNNNNTGG 1 cut(s) 883
BsuRI GGCC 2 cut(s) 299, 398
BtgI CCRYGG 2 cut(s) 628, 846
BtgZI GCGATG 1 cut(s) 917
BtsCI GGATG 3 cut(s) 242, 390, 859
BtsI GCAGTG 2 cut(s) 162, 706
BtsIMutI CAGTG 5 cut(s) 162, 425, 453, 706, 832
Cac8I GCNNGC 1 cut(s) 184
CaiI CAGNNNCTG 1 cut(s) 677
Cfr13I GGNCC 2 cut(s) 434, 499
Cfr42I CCGCGG 1 cut(s) 849
CseI GACGC 1 cut(s) 927
Csp6I GTAC 1 cut(s) 172
CviAII CATG 2 cut(s) 187, 373
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 7 cut(s) 93, 163, 314, 709, 729, 808, 923
DraI TTTAAA 1 cut(s) 277
DraIII CACNNNGTG 1 cut(s) 431
EaeI YGGCCR 2 cut(s) 297, 396
Eam1104I CTCTTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 457
Eco24I GRGCYC 1 cut(s) 941
Eco31I GGTCTC 1 cut(s) 382
Eco47I GGWCC 2 cut(s) 434, 499
EcoO109I RGGNCCY 1 cut(s) 499
EcoRII CCWGG 3 cut(s) 393, 407, 694
EcoT22I ATGCAT 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 941
FaeI CATG 2 cut(s) 190, 376
FaiI YATR 8 cut(s) 114, 188, 374, 602, 725, 823, 861, 884
FaqI GGGAC 1 cut(s) 930
FatI CATG 2 cut(s) 186, 372
FokI GGATG 3 cut(s) 249, 377, 866
FriOI GRGCYC 1 cut(s) 941
FspBI CTAG 2 cut(s) 105, 979
GsaI CCCAGC 1 cut(s) 510
HaeIII GGCC 2 cut(s) 299, 398
HgaI GACGC 1 cut(s) 927
Hin1I GRCGYC 2 cut(s) 738, 919
Hin1II CATG 2 cut(s) 190, 376
HincII GTYRAC 2 cut(s) 232, 976
HindII GTYRAC 2 cut(s) 232, 976
HinfI GANTC 3 cut(s) 161, 413, 467
HpaI GTTAAC 1 cut(s) 232
HphI GGTGA 1 cut(s) 553
Hpy166II GTNNAC 8 cut(s) 141, 160, 172, 232, 434, 632, 837, 976
Hpy188I TCNGA 4 cut(s) 317, 730, 811, 933
Hpy188III TCNNGA 1 cut(s) 775
Hpy8I GTNNAC 8 cut(s) 141, 160, 172, 232, 434, 632, 837, 976
Hpy99I CGWCG 1 cut(s) 295
HpyAV CCTTC 4 cut(s) 28, 34, 523, 787
HpyCH4III ACNGT 5 cut(s) 448, 565, 764, 827, 965
HpyCH4IV ACGT 4 cut(s) 290, 483, 738, 755
HpyCH4V TGCA 8 cut(s) 155, 211, 245, 425, 479, 620, 671, 805
HpyF10VI GCNNNNNNNGC 8 cut(s) 208, 404, 617, 668, 683, 705, 854, 869
HpyF3I CTNAG 7 cut(s) 93, 163, 314, 709, 729, 808, 923
HpySE526I ACGT 4 cut(s) 290, 483, 738, 755
Hsp92I GRCGYC 2 cut(s) 738, 919
Hsp92II CATG 2 cut(s) 190, 376
KspAI GTTAAC 1 cut(s) 232
KspI CCGCGG 1 cut(s) 849
LmnI GCTCC 3 cut(s) 191, 207, 944
Lsp1109I GCAGC 8 cut(s) 391, 463, 683, 686, 786, 789, 829, 859
LweI GCATC 3 cut(s) 232, 254, 844
MaeI CTAG 2 cut(s) 105, 979
MaeII ACGT 4 cut(s) 290, 483, 738, 755
MaeIII GTNAC 3 cut(s) 484, 523, 739
MboII GAAGA 4 cut(s) 41, 474, 616, 899
MhlI GDGCHC 3 cut(s) 595, 695, 941
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 4 cut(s) 307, 350, 534, 951
MluNI TGGCCA 1 cut(s) 299
MlyI GAGTC 2 cut(s) 155, 461
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 9 cut(s) 65, 71, 311, 319, 371, 490, 512, 606, 939
Mox20I TGGCCA 1 cut(s) 299
Mph1103I ATGCAT 1 cut(s) 247
MscI TGGCCA 1 cut(s) 299
MseI TTAA 2 cut(s) 231, 276
Msp20I TGGCCA 1 cut(s) 299
MspA1I CMGCKG 4 cut(s) 167, 476, 677, 848
MspR9I CCNGG 3 cut(s) 395, 409, 696
Mva1269I GAATGC 1 cut(s) 620
MvaI CCWGG 3 cut(s) 395, 409, 696
MvnI CGCG 1 cut(s) 848
MwoI GCNNNNNNNGC 8 cut(s) 208, 404, 617, 668, 683, 705, 854, 869
NlaIII CATG 2 cut(s) 190, 376
NlaIV GGNNCC 2 cut(s) 436, 940
NmuCI GTSAC 3 cut(s) 484, 523, 739
NsiI ATGCAT 1 cut(s) 247
PctI GAATGC 1 cut(s) 620
PfeI GAWTC 1 cut(s) 413
PflMI CCANNNNNTGG 1 cut(s) 701
PleI GAGTC 2 cut(s) 155, 461
PpsI GAGTC 2 cut(s) 155, 461
PpuMI RGGWCCY 1 cut(s) 499
Psp5II RGGWCCY 1 cut(s) 499
Psp6I CCWGG 3 cut(s) 393, 407, 694
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 3 cut(s) 393, 407, 694
PspN4I GGNNCC 2 cut(s) 436, 940
PspPI GGNCC 2 cut(s) 434, 499
PspPPI RGGWCCY 1 cut(s) 499
PstI CTGCAG 1 cut(s) 157
PstNI CAGNNNCTG 1 cut(s) 677
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SacII CCGCGG 1 cut(s) 849
SaqAI TTAA 2 cut(s) 231, 276
Sau96I GGNCC 2 cut(s) 434, 499
SchI GAGTC 2 cut(s) 155, 461
ScrFI CCNGG 3 cut(s) 395, 409, 696
SduI GDGCHC 3 cut(s) 595, 695, 941
SfaNI GCATC 3 cut(s) 232, 254, 844
SfcI CTRYAG 2 cut(s) 153, 600
Sfr303I CCGCGG 1 cut(s) 849
SgrBI CCGCGG 1 cut(s) 849
SinI GGWCC 2 cut(s) 434, 499
Sse9I AATT 4 cut(s) 307, 350, 534, 951
SsiI CCGC 7 cut(s) 102, 167, 474, 489, 539, 846, 848
SspMI CTAG 2 cut(s) 105, 979
StyD4I CCNGG 3 cut(s) 393, 407, 694
TaaI ACNGT 5 cut(s) 448, 565, 764, 827, 965
TaiI ACGT 4 cut(s) 293, 486, 741, 758
TaqI TCGA 3 cut(s) 333, 759, 967
TasI AATT 4 cut(s) 307, 350, 534, 951
TatI WGTACW 1 cut(s) 171
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 2 cut(s) 231, 276
Tru9I TTAA 2 cut(s) 231, 276
TscAI CASTG 5 cut(s) 162, 432, 453, 706, 832
TseFI GTSAC 3 cut(s) 484, 523, 739
TseI GCWGC 9 cut(s) 6, 404, 476, 671, 674, 799, 802, 817, 872
Tsp45I GTSAC 3 cut(s) 484, 523, 739
TspDTI ATGAA 1 cut(s) 920
TspGWI ACGGA 4 cut(s) 194, 249, 509, 617
TspRI CASTG 5 cut(s) 162, 432, 453, 706, 832
Van91I CCANNNNNTGG 1 cut(s) 701
VpaK11BI GGWCC 2 cut(s) 434, 499
XcmI CCANNNNNNNNNTGG 2 cut(s) 424, 445
XspI CTAG 2 cut(s) 105, 979
ZraI GACGTC 1 cut(s) 739
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.