Prupe.6G292400_v2.0.a1

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
26928505 .. 26930357
1853 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G292400.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 894 bp
ATGCAATTGTTGCGATATTATCTTCGAAATTATATTCTTGCAACGCATATTTGGGGACGTGGCAAATGCTATAGCTCCAGCAAATACATGCAAAAAGGCCCTTCTTATATTGTTCATGAAGAGATTGGCCTAGGTGTCACTCTATCTTACCATAGGCAACTTTCCCACCGGAGTTTTAAGCTTCCCAAATGGCTTGAATATTTCTTTGCCTATTGCGGTGTATTGTCAGTTCAGGGAAGTCCAATTGAATGGGCGAGCACACACAGGAATCACCACCAGTTTACTGACACGTGGGACGACCCTCATAGCCCCATCAAAGGATTGTGGTTTAGTCACATTGGTTGGCTCTTTGATTATCGTTCTCGATTTGGAAGTTATGAAGGACGGCTAAAGAATGTTGATGATTTAAAAAGGCAGAAGTTCTATAGGTTTCTTCATGTCACATACCCGCTTCACTCAATAGCTTTTGGAGTTTTACTATATGCCCTAGGAGGAATGCCCTTTTTAGCTTGGGGATTGGGTGTGAGGGCGGCATTATTTGCCCACGCTACTTTTGCACTAAATTCAATTTGCCATAGATGGGGCAAGAAAGTATGGGATACTGGTGATATGTCTAGAAACAACTGGGTATTTGGATTGCTTACACATGGAGAAGGTTGGCACAATAACCACCATGCTTTTCAATACTCAGCTCGGCATGGCTTCGAATGGTGGGAAGTTGATGTCACTTGGTATGTAATAAGATTTCTTGAAATTGTTGGTTTGGCAACAGATGTGAAACTCCCAAGTGAGACTCAGAAGAAACGAAAAGCTTTATCCAACAAACTCAACGAGGAAAAGCTTGAAACACAAGTGAACGACACAAAGCTTGAAACCGAAGCCAAAAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

298

Amino Acids

34.92

Weight (kDa)

9.31

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 216, 449, 530
AcsI RAATTY 1 cut(s) 562
AcvI CACGTG 1 cut(s) 291
AfiI CCNNNNNNNGG 2 cut(s) 317, 580
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 7 cut(s) 197, 248, 567, 683, 752, 845, 872
AjiI CACGTC 1 cut(s) 59
AluBI AGCT 8 cut(s) 75, 181, 464, 509, 692, 812, 841, 868
AluI AGCT 8 cut(s) 75, 181, 464, 509, 692, 812, 841, 868
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 785
AoxI GGCC 2 cut(s) 97, 127
ApoI RAATTY 1 cut(s) 562
AspA2I CCTAGG 2 cut(s) 130, 487
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 263, 617
AsuII TTCGAA 2 cut(s) 25, 705
AvrII CCTAGG 2 cut(s) 130, 487
BbrPI CACGTG 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 260
BccI CCATC 2 cut(s) 320, 573
BceAI ACGGC 1 cut(s) 401
BciVI GTATCC 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 785
BfaI CTAG 3 cut(s) 131, 488, 615
BfmI CTRYAG 2 cut(s) 70, 424
BfuI GTATCC 1 cut(s) 592
BisI GCNGC 1 cut(s) 531
BlnI CCTAGG 2 cut(s) 130, 487
BlsI GCNGC 1 cut(s) 532
BmgBI CACGTC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 98
BmrI ACTGGG 1 cut(s) 634
BmuI ACTGGG 1 cut(s) 634
BpmI CTGGAG 1 cut(s) 61
Bpu14I TTCGAA 2 cut(s) 25, 705
BsaAI YACGTR 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 130, 487
BsaWI WCCGGW 1 cut(s) 168
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 580
Bse1I ACTGG 3 cut(s) 277, 607, 629
BseDI CCNNGG 2 cut(s) 130, 487
BseLI CCNNNNNNNGG 2 cut(s) 317, 580
BseMII CTCAG 2 cut(s) 702, 809
BseNI ACTGG 3 cut(s) 277, 607, 629
BshFI GGCC 2 cut(s) 99, 129
BsiHKAI GWGCWC 1 cut(s) 260
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 2 cut(s) 69, 308
BslI CCNNNNNNNGG 2 cut(s) 317, 580
BsmAI GTCTC 1 cut(s) 785
BsmFI GGGAC 2 cut(s) 69, 308
BsmI GAATGC 1 cut(s) 501
BsnI GGCC 2 cut(s) 99, 129
Bsp119I TTCGAA 2 cut(s) 25, 705
Bsp1286I GDGCHC 1 cut(s) 260
BspACI CCGC 3 cut(s) 216, 449, 530
BspANI GGCC 2 cut(s) 99, 129
BspCNI CTCAG 2 cut(s) 701, 808
BspHI TCATGA 1 cut(s) 115
BspT104I TTCGAA 2 cut(s) 25, 705
BsrI ACTGG 3 cut(s) 277, 607, 629
BssECI CCNNGG 2 cut(s) 130, 487
BssT1I CCWWGG 2 cut(s) 130, 487
Bst6I CTCTTC 1 cut(s) 114
BstAPI GCANNNNNTGC 2 cut(s) 10, 539
BstBAI YACGTR 1 cut(s) 291
BstBI TTCGAA 2 cut(s) 25, 705
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 2 cut(s) 688, 795
BstMAI GTCTC 1 cut(s) 785
BstMWI GCNNNNNNNGC 3 cut(s) 10, 539, 554
BstNSI RCATGY 1 cut(s) 91
BstSFI CTRYAG 2 cut(s) 70, 424
BstXI CCANNNNNNTGG 1 cut(s) 249
BsuI GTATCC 1 cut(s) 592
BsuRI GGCC 2 cut(s) 99, 129
BtrI CACGTC 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 256
CciI TCATGA 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 98
CviAII CATG 6 cut(s) 88, 116, 437, 647, 674, 698
DdeI CTNAG 2 cut(s) 688, 795
DraI TTTAAA 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 130, 487
Eco72I CACGTG 1 cut(s) 291
EcoO109I RGGNCCY 1 cut(s) 98
EcoT14I CCWWGG 2 cut(s) 130, 487
ErhI CCWWGG 2 cut(s) 130, 487
FaeI CATG 6 cut(s) 91, 119, 440, 650, 677, 701
FaqI GGGAC 2 cut(s) 69, 308
FatI CATG 6 cut(s) 87, 115, 436, 646, 673, 697
FauI CCCGC 1 cut(s) 456
Fnu4HI GCNGC 1 cut(s) 531
Fsp4HI GCNGC 1 cut(s) 531
FspBI CTAG 3 cut(s) 131, 488, 615
GluI GCNGC 1 cut(s) 531
GsuI CTGGAG 1 cut(s) 61
HaeIII GGCC 2 cut(s) 99, 129
HapII CCGG 1 cut(s) 169
Hin1II CATG 6 cut(s) 91, 119, 440, 650, 677, 701
HindIII AAGCTT 4 cut(s) 179, 810, 839, 866
HinfI GANTC 2 cut(s) 268, 793
HpaII CCGG 1 cut(s) 169
HphI GGTGA 2 cut(s) 263, 617
Hpy166II GTNNAC 2 cut(s) 282, 856
Hpy188I TCNGA 1 cut(s) 798
Hpy188III TCNNGA 4 cut(s) 116, 363, 615, 749
Hpy8I GTNNAC 2 cut(s) 282, 856
HpyAV CCTTC 3 cut(s) 111, 374, 647
HpyCH4IV ACGT 2 cut(s) 58, 290
HpyCH4V TGCA 4 cut(s) 4, 41, 91, 557
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 539, 554
HpyF3I CTNAG 2 cut(s) 688, 795
HpySE526I ACGT 2 cut(s) 58, 290
Hsp92II CATG 6 cut(s) 91, 119, 440, 650, 677, 701
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 7 cut(s) 91, 182, 218, 250, 290, 588, 610
MaeI CTAG 3 cut(s) 131, 488, 615
MaeII ACGT 2 cut(s) 58, 290
MaeIII GTNAC 4 cut(s) 136, 332, 439, 724
MboII GAAGA 4 cut(s) 14, 131, 425, 811
MfeI CAATTG 2 cut(s) 5, 243
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 6 cut(s) 5, 28, 243, 562, 567, 753
MlyI GAGTC 1 cut(s) 787
MmeI TCCRAC 1 cut(s) 843
MnlI CCTC 4 cut(s) 312, 485, 519, 826
MseI TTAA 2 cut(s) 177, 407
MspI CCGG 1 cut(s) 169
MunI CAATTG 2 cut(s) 5, 243
Mva1269I GAATGC 1 cut(s) 501
MwoI GCNNNNNNNGC 3 cut(s) 10, 539, 554
NlaIII CATG 6 cut(s) 91, 119, 440, 650, 677, 701
NmeAIII GCCGAG 1 cut(s) 673
NmuCI GTSAC 4 cut(s) 136, 332, 439, 724
NspI RCATGY 1 cut(s) 91
NspV TTCGAA 2 cut(s) 25, 705
PagI TCATGA 1 cut(s) 115
PctI GAATGC 1 cut(s) 501
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 1 cut(s) 532
PleI GAGTC 1 cut(s) 787
PmaCI CACGTG 1 cut(s) 291
PmlI CACGTG 1 cut(s) 291
PpsI GAGTC 1 cut(s) 787
Ppu21I YACGTR 1 cut(s) 291
PspCI CACGTG 1 cut(s) 291
PspPI GGNCC 1 cut(s) 98
PsrI GAACNNNNNNTAC 2 cut(s) 213, 245
SaqAI TTAA 2 cut(s) 177, 407
SatI GCNGC 1 cut(s) 531
Sau96I GGNCC 1 cut(s) 98
SchI GAGTC 1 cut(s) 787
SduI GDGCHC 1 cut(s) 260
SfcI CTRYAG 2 cut(s) 70, 424
SfuI TTCGAA 2 cut(s) 25, 705
Sse9I AATT 6 cut(s) 5, 28, 243, 562, 567, 753
SsiI CCGC 3 cut(s) 216, 449, 530
SspI AATATT 1 cut(s) 200
SspMI CTAG 3 cut(s) 131, 488, 615
StyI CCWWGG 2 cut(s) 130, 487
TaiI ACGT 2 cut(s) 61, 293
TaqI TCGA 3 cut(s) 25, 364, 705
TasI AATT 6 cut(s) 5, 28, 243, 562, 567, 753
TauI GCSGC 1 cut(s) 533
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 2 cut(s) 177, 407
Tru9I TTAA 2 cut(s) 177, 407
TseFI GTSAC 4 cut(s) 136, 332, 439, 724
Tsp45I GTSAC 4 cut(s) 136, 332, 439, 724
TspDTI ATGAA 4 cut(s) 104, 132, 393, 425
XapI RAATTY 1 cut(s) 562
XbaI TCTAGA 1 cut(s) 614
XceI RCATGY 1 cut(s) 91
XmaJI CCTAGG 2 cut(s) 130, 487
XspI CTAG 3 cut(s) 131, 488, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.