Prupe.6G299200_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
27241751 .. 27242260
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G299200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 510 bp
ATGGTCTGGCTCACAGTCATCTGTCCGGCAGTGACCTCTGTTCTTATGCTCATATCGATTATACTGCTGCTTCTATCCATGACAGTGTACAAGAAAATGACCCCCATAACAACGGTGGACGTCGTGGCCTTAAGACACATCGACATGTCACGTAATGTGCCCGAAATCAGTGTGGATGTGAACATGTCTGTGATGAACCCCAATGGTGTGGCCTTCAAGTACACCCACAGCACAGTGCTCTTGGTTTACCGGGGTGTGGTGGTGGGTGAGGCTCTTATAGAAGCAGGAGTGATATCAAAGGCTGCCACCAAAACCGCAAATGTAATTCTGGCTAGTAATTTAGCTGATCGTTTGCAGGGAGAATCGGAGCTGATTATGATTCATTCGGACATGTTAGCTGGTACATTGCCCTTCAACATTCAAATCAAATTCTCTGGCAGATTGTTTTCTCTTCTCAAAATCTTCCAAGTTTCATGCCGACGCGGTCTCTACCAGCTCATGCTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

170

Amino Acids

18.63

Weight (kDa)

9.26

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
AccII CGCG 1 cut(s) 483
AciI CCGC 2 cut(s) 315, 483
AcsI RAATTY 1 cut(s) 428
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 3 cut(s) 89, 221, 403
AfiI CCNNNNNNNGG 1 cut(s) 256
AflII CTTAAG 1 cut(s) 130
AflIII ACRYGT 3 cut(s) 144, 183, 390
AgsI TTSAA 3 cut(s) 217, 415, 422
AluBI AGCT 4 cut(s) 344, 370, 398, 496
AluI AGCT 4 cut(s) 344, 370, 398, 496
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 491
AoxI GGCC 2 cut(s) 126, 210
ApeKI GCWGC 2 cut(s) 67, 302
ApoI RAATTY 1 cut(s) 428
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 278
BaeGI GKGCMC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 54, 289
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 1 cut(s) 333
BfrI CTTAAG 1 cut(s) 130
BisI GCNGC 2 cut(s) 68, 303
BlsI GCNGC 2 cut(s) 69, 304
Bme1390I CCNGG 1 cut(s) 251
BmrFI CCNGG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 56
BsaAI YACGTR 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 491
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 404
BseCI ATCGAT 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 404
BseSI GKGCMC 1 cut(s) 162
BseXI GCAGC 2 cut(s) 54, 289
Bsh1236I CGCG 1 cut(s) 483
BshFI GGCC 2 cut(s) 128, 212
BshVI ATCGAT 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 2 cut(s) 26, 250
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 491
BsnI GGCC 2 cut(s) 128, 212
Bso31I GGTCTC 1 cut(s) 491
Bsp1286I GDGCHC 2 cut(s) 162, 240
Bsp1407I TGTACA 1 cut(s) 87
Bsp143I GATC 1 cut(s) 346
BspACI CCGC 2 cut(s) 315, 483
BspANI GGCC 2 cut(s) 128, 212
BspDI ATCGAT 1 cut(s) 56
BspFNI CGCG 1 cut(s) 483
BspTI CTTAAG 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 491
BsrDI GCAATG 1 cut(s) 404
BsrGI TGTACA 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 1 cut(s) 346
BssNI GRCGYC 1 cut(s) 120
Bst4CI ACNGT 4 cut(s) 16, 85, 115, 235
Bst6I CTCTTC 1 cut(s) 456
BstACI GRCGYC 1 cut(s) 120
BstAFI CTTAAG 1 cut(s) 130
BstAUI TGTACA 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 152
BstF5I GGATG 1 cut(s) 181
BstFNI CGCG 1 cut(s) 483
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 1 cut(s) 346
BstNSI RCATGY 3 cut(s) 148, 187, 394
BstSCI CCNGG 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 162
BstUI CGCG 1 cut(s) 483
BstV1I GCAGC 2 cut(s) 54, 289
BstXI CCANNNNNNTGG 1 cut(s) 208
Bsu15I ATCGAT 1 cut(s) 56
BsuRI GGCC 2 cut(s) 128, 212
BsuTUI ATCGAT 1 cut(s) 56
BtsCI GGATG 1 cut(s) 181
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 4 cut(s) 36, 90, 175, 240
ClaI ATCGAT 1 cut(s) 56
CseI GACGC 1 cut(s) 489
Csp6I GTAC 3 cut(s) 88, 220, 402
CviAII CATG 6 cut(s) 79, 145, 184, 391, 474, 499
CviQI GTAC 3 cut(s) 88, 220, 402
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Eco31I GGTCTC 1 cut(s) 491
Eco32I GATATC 1 cut(s) 294
EcoRV GATATC 1 cut(s) 294
FaeI CATG 6 cut(s) 82, 148, 187, 394, 477, 502
FatI CATG 6 cut(s) 78, 144, 183, 390, 473, 498
Fnu4HI GCNGC 2 cut(s) 68, 303
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 2 cut(s) 68, 303
FspBI CTAG 1 cut(s) 333
GluI GCNGC 2 cut(s) 68, 303
HaeIII GGCC 2 cut(s) 128, 212
HapII CCGG 2 cut(s) 26, 250
HgaI GACGC 1 cut(s) 489
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 6 cut(s) 82, 148, 187, 394, 477, 502
HinfI GANTC 2 cut(s) 362, 379
HpaII CCGG 2 cut(s) 26, 250
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 5 cut(s) 88, 118, 181, 222, 247
Hpy188I TCNGA 2 cut(s) 367, 388
Hpy8I GTNNAC 5 cut(s) 88, 118, 181, 222, 247
Hpy99I CGWCG 2 cut(s) 125, 483
HpyAV CCTTC 2 cut(s) 223, 421
HpyCH4III ACNGT 4 cut(s) 16, 85, 115, 235
HpyCH4IV ACGT 2 cut(s) 120, 151
HpyCH4V TGCA 1 cut(s) 355
HpySE526I ACGT 2 cut(s) 120, 151
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 6 cut(s) 82, 148, 187, 394, 477, 502
Kzo9I GATC 1 cut(s) 346
LmnI GCTCC 1 cut(s) 367
LpnPI CCDG 8 cut(s) 39, 263, 270, 314, 341, 384, 420, 506
Lsp1109I GCAGC 2 cut(s) 54, 289
MaeI CTAG 1 cut(s) 333
MaeII ACGT 2 cut(s) 120, 151
MaeIII GTNAC 2 cut(s) 31, 147
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 2 cut(s) 443, 454
MhlI GDGCHC 2 cut(s) 162, 240
MluCI AATT 3 cut(s) 324, 337, 428
MnlI CCTC 2 cut(s) 46, 262
MseI TTAA 1 cut(s) 131
MslI CAYNNNNRTG 3 cut(s) 83, 143, 188
MspCI CTTAAG 1 cut(s) 130
MspI CCGG 2 cut(s) 26, 250
MspR9I CCNGG 1 cut(s) 251
MvnI CGCG 1 cut(s) 483
NciI CCSGG 1 cut(s) 251
NdeII GATC 1 cut(s) 346
NlaIII CATG 6 cut(s) 82, 148, 187, 394, 477, 502
NmuCI GTSAC 2 cut(s) 31, 147
NspI RCATGY 3 cut(s) 148, 187, 394
PciI ACATGT 3 cut(s) 144, 183, 390
PfeI GAWTC 2 cut(s) 362, 379
PflFI GACNNNGTC 1 cut(s) 483
PkrI GCNGC 2 cut(s) 69, 304
Ppu21I YACGTR 1 cut(s) 152
PscI ACATGT 3 cut(s) 144, 183, 390
PsyI GACNNNGTC 1 cut(s) 483
RsaI GTAC 3 cut(s) 89, 221, 403
RsaNI GTAC 3 cut(s) 88, 220, 402
RseI CAYNNNNRTG 3 cut(s) 83, 143, 188
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 2 cut(s) 68, 303
Sau3AI GATC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 2 cut(s) 162, 240
SetI ASST 7 cut(s) 38, 123, 154, 346, 372, 400, 498
SmiMI CAYNNNNRTG 3 cut(s) 83, 143, 188
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
Sse9I AATT 3 cut(s) 324, 337, 428
SsiI CCGC 2 cut(s) 315, 483
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 249
TaaI ACNGT 4 cut(s) 16, 85, 115, 235
TaiI ACGT 2 cut(s) 123, 154
TaqI TCGA 2 cut(s) 56, 141
TasI AATT 3 cut(s) 324, 337, 428
TatI WGTACW 2 cut(s) 87, 219
TfiI GAWTC 2 cut(s) 362, 379
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TscAI CASTG 4 cut(s) 36, 90, 175, 240
TseFI GTSAC 2 cut(s) 31, 147
TseI GCWGC 2 cut(s) 67, 302
Tsp45I GTSAC 2 cut(s) 31, 147
TspDTI ATGAA 3 cut(s) 209, 371, 462
TspRI CASTG 4 cut(s) 36, 90, 175, 240
Tth111I GACNNNGTC 1 cut(s) 483
Vha464I CTTAAG 1 cut(s) 130
XapI RAATTY 1 cut(s) 428
XceI RCATGY 3 cut(s) 148, 187, 394
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XspI CTAG 1 cut(s) 333
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.