Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

27696852 .. 27698292

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G307300.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCCAAGGTCTTCAGCGCACGGGGCGTTTGGTGCCGCAGGGGACAGTGTCACTGATGACGCACAAGCATTCAGTAAGGCTTGGGATGCCGCTTGCCAGATCGGAAGATCCTCTGTAGTTTTTCTTGTTCCTGATAAATATTCCTTCCTTACACAAAGTAGCCTATTCAAAGGGCCTTGTAAATCTTACCTACTGTTTCAGCTTGATGGGAGGATTGTGGCTCCTAGTGGACCCAATAAATGGTCATCAAGAAATAGTAAATCAGATTGGATGGACTTCTATGGAATCCATGGCATGACAATGCAAGGAGGTGGGCTTATAGATGGAAGAGGAGAAAAATGGTGGAATCTCCCCTGTACTTCAGCCCTAAGATTTTTGAAAAGCTCTAACTTGAAAGTTCAAGGGATCGGTGTTCAAAGCAGCCCCAAGTTCCATGTCTGCTTTGATGATTGTCAAAATGTCCGATTAGAGTTCATCAGCATAAACTCACTGGGTGATAGCCCGAAGACCGATGGAATTCACATAGAGGATTCCAACAATGTGGAAATACACCATTCAAGAATTTCACCTGGTGATAGTAGTCATGATGTGGACATAACGAATGTAACTTGTGGTCCAAGATCAAAACATGGCATAGTGGATCAGGAGCTGTGGCCAAAAATAACCTTCAACAACATAGAAATGGACAAAGTCAAAAACCCAATTATCACCAACCAATACTATTGCCTCAAAGACCACTACCCCAATCAAACTGCTGCCCTCAAGATATATGATGTTTCACATGCACAGCACATACAATGTGAAAAACCCACCTGTGCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009825 GO:0009827 GO:0009831 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016798 GO:0030312 GO:0040007 GO:0042545 GO:0042547 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

275

Amino Acids

30.32

Weight (kDa)

6.82

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	240
AciI	CCGC	2 cut(s)	36, 90
AclWI	GGATC	3 cut(s)	102, 413, 648
AcoI	YGGCCR	1 cut(s)	653
AcsI	RAATTY	2 cut(s)	516, 561
AcuI	CTGAAG	1 cut(s)	345
AdeI	CACNNNGTG	2 cut(s)	494, 572
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	7 cut(s)	169, 379, 394, 401, 416, 558, 670
AjnI	CCWGG	1 cut(s)	568
AluBI	AGCT	3 cut(s)	202, 384, 649
AluI	AGCT	3 cut(s)	202, 384, 649
AlwI	GGATC	3 cut(s)	102, 413, 648
AlwNI	CAGNNNCTG	1 cut(s)	649
AoxI	GGCC	2 cut(s)	173, 653
ApeKI	GCWGC	2 cut(s)	420, 755
ApoI	RAATTY	2 cut(s)	516, 561
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	3 cut(s)	173, 230, 614
AsuHPI	GGTGA	4 cut(s)	506, 558, 584, 700
AvaII	GGWCC	2 cut(s)	230, 614
BalI	TGGCCA	1 cut(s)	655
BanI	GGYRCC	1 cut(s)	32
BbsI	GAAGAC	2 cut(s)	3, 512
BbvI	GCAGC	2 cut(s)	432, 742
BccI	CCATC	4 cut(s)	200, 265, 317, 506
BciT130I	CCWGG	1 cut(s)	570
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	4 cut(s)	36, 90, 421, 756
BlsI	GCNGC	4 cut(s)	37, 91, 422, 757
Bme1390I	CCNGG	1 cut(s)	570
Bme18I	GGWCC	2 cut(s)	230, 614
BmgT120I	GGNCC	3 cut(s)	173, 230, 614
BmiI	GGNNCC	3 cut(s)	34, 222, 232
BmrFI	CCNGG	1 cut(s)	570
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	1 cut(s)	76
BmuI	ACTGGG	1 cut(s)	500
BpiI	GAAGAC	2 cut(s)	3, 512
BpuEI	CTTGAG	1 cut(s)	746
BsaJI	CCNNGG	2 cut(s)	5, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	2 cut(s)	5, 289
BseGI	GGATG	2 cut(s)	91, 276
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	432, 742
BshFI	GGCC	2 cut(s)	175, 655
BshNI	GGYRCC	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	175, 655
Bsp143I	GATC	5 cut(s)	99, 107, 405, 620, 640
Bsp19I	CCATGG	1 cut(s)	289
BspACI	CCGC	2 cut(s)	36, 90
BspANI	GGCC	2 cut(s)	175, 655
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	3 cut(s)	34, 222, 232
BspPI	GGATC	3 cut(s)	102, 413, 648
BspT107I	GGYRCC	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	495
BssECI	CCNNGG	2 cut(s)	5, 289
BssMI	GATC	5 cut(s)	99, 107, 405, 620, 640
BssT1I	CCWWGG	2 cut(s)	5, 289
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	2 cut(s)	47, 195
Bst6I	CTCTTC	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	368
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	2 cut(s)	91, 276
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	5 cut(s)	102, 110, 408, 623, 643
BstMBI	GATC	5 cut(s)	99, 107, 405, 620, 640
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 32, 86
BstNI	CCWGG	1 cut(s)	570
BstNSI	RCATGY	1 cut(s)	785
BstSCI	CCNGG	1 cut(s)	568
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	432, 742
BstV2I	GAAGAC	2 cut(s)	3, 512
BstX2I	RGATCY	1 cut(s)	107
BstXI	CCANNNNNNTGG	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	175, 655
BtgI	CCRYGG	1 cut(s)	289
BtsCI	GGATG	2 cut(s)	91, 276
BtsIMutI	CAGTG	3 cut(s)	51, 52, 488
Cac8I	GCNNGC	1 cut(s)	94
CaiI	CAGNNNCTG	1 cut(s)	649
CciI	TCATGA	1 cut(s)	583
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	3 cut(s)	173, 230, 614
CseI	GACGC	1 cut(s)	68
CsiI	ACCWGGT	1 cut(s)	568
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	6 cut(s)	290, 295, 434, 584, 629, 782
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	1 cut(s)	368
DpnI	GATC	5 cut(s)	101, 109, 407, 622, 642
DpnII	GATC	5 cut(s)	99, 107, 405, 620, 640
DraIII	CACNNNGTG	2 cut(s)	494, 572
EaeI	YGGCCR	1 cut(s)	653
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
Eco130I	CCWWGG	2 cut(s)	5, 289
Eco47I	GGWCC	2 cut(s)	230, 614
Eco57I	CTGAAG	1 cut(s)	345
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	568
EcoT14I	CCWWGG	2 cut(s)	5, 289
ErhI	CCWWGG	2 cut(s)	5, 289
FaeI	CATG	6 cut(s)	293, 298, 437, 587, 632, 785
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	6 cut(s)	289, 294, 433, 583, 628, 781
Fnu4HI	GCNGC	4 cut(s)	36, 90, 421, 756
FokI	GGATG	2 cut(s)	98, 283
Fsp4HI	GCNGC	4 cut(s)	36, 90, 421, 756
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	4 cut(s)	36, 90, 421, 756
HaeIII	GGCC	2 cut(s)	175, 655
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	6 cut(s)	293, 298, 437, 587, 632, 785
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	3 cut(s)	285, 346, 530
HphI	GGTGA	4 cut(s)	506, 558, 584, 700
Hpy166II	GTNNAC	2 cut(s)	230, 592
Hpy188I	TCNGA	3 cut(s)	104, 265, 464
Hpy188III	TCNNGA	6 cut(s)	131, 249, 558, 584, 644, 763
Hpy8I	GTNNAC	2 cut(s)	230, 592
HpyAV	CCTTC	2 cut(s)	154, 676
HpyCH4III	ACNGT	2 cut(s)	47, 195
HpyCH4V	TGCA	3 cut(s)	304, 785, 818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 32, 86
HpyF3I	CTNAG	1 cut(s)	368
Hsp92II	CATG	6 cut(s)	293, 298, 437, 587, 632, 785
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	5 cut(s)	99, 107, 405, 620, 640
LmnI	GCTCC	2 cut(s)	226, 646
LpnPI	CCDG	8 cut(s)	24, 110, 144, 367, 476, 555, 582, 629
Lsp1109I	GCAGC	2 cut(s)	432, 742
LweI	GCATC	1 cut(s)	76
MabI	ACCWGGT	1 cut(s)	568
MaeI	CTAG	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	49, 604
MalI	GATC	5 cut(s)	101, 109, 407, 622, 642
MboI	GATC	5 cut(s)	99, 107, 405, 620, 640
MboII	GAAGA	4 cut(s)	3, 117, 339, 517
MflI	RGATCY	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	655
MluCI	AATT	3 cut(s)	516, 561, 702
MluNI	TGGCCA	1 cut(s)	655
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	7 cut(s)	121, 204, 302, 323, 520, 737, 770
Mox20I	TGGCCA	1 cut(s)	655
MscI	TGGCCA	1 cut(s)	655
MseI	TTAA	1 cut(s)	823
MslI	CAYNNNNRTG	2 cut(s)	299, 680
Msp20I	TGGCCA	1 cut(s)	655
MspR9I	CCNGG	1 cut(s)	570
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	570
MwoI	GCNNNNNNNGC	3 cut(s)	23, 32, 86
NcoI	CCATGG	1 cut(s)	289
NdeII	GATC	5 cut(s)	99, 107, 405, 620, 640
NlaIII	CATG	6 cut(s)	293, 298, 437, 587, 632, 785
NlaIV	GGNNCC	3 cut(s)	34, 222, 232
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	785
PagI	TCATGA	1 cut(s)	583
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	3 cut(s)	285, 346, 530
PflFI	GACNNNGTC	2 cut(s)	47, 689
PflMI	CCANNNNNTGG	1 cut(s)	240
PkrI	GCNGC	4 cut(s)	37, 91, 422, 757
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	3 cut(s)	34, 222, 232
PspPI	GGNCC	3 cut(s)	173, 230, 614
PstNI	CAGNNNCTG	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	107
PsyI	GACNNNGTC	2 cut(s)	47, 689
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
RseI	CAYNNNNRTG	2 cut(s)	299, 680
SaqAI	TTAA	1 cut(s)	823
SatI	GCNGC	4 cut(s)	36, 90, 421, 756
Sau3AI	GATC	5 cut(s)	99, 107, 405, 620, 640
Sau96I	GGNCC	3 cut(s)	173, 230, 614
ScrFI	CCNGG	1 cut(s)	570
SetI	ASST	9 cut(s)	11, 192, 204, 313, 386, 571, 651, 668, 815
SexAI	ACCWGGT	1 cut(s)	568
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	2 cut(s)	230, 614
SmiMI	CAYNNNNRTG	2 cut(s)	299, 680
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
Sse9I	AATT	3 cut(s)	516, 561, 702
SsiI	CCGC	2 cut(s)	36, 90
SspI	AATATT	1 cut(s)	140
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	568
StyI	CCWWGG	2 cut(s)	5, 289
TaaI	ACNGT	2 cut(s)	47, 195
TaqII	GACCGA	1 cut(s)	524
TasI	AATT	3 cut(s)	516, 561, 702
TatI	WGTACW	1 cut(s)	356
TauI	GCSGC	2 cut(s)	38, 92
TfiI	GAWTC	3 cut(s)	285, 346, 530
Tru1I	TTAA	1 cut(s)	823
Tru9I	TTAA	1 cut(s)	823
TscAI	CASTG	3 cut(s)	52, 58, 495
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	420, 755
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	463
TspRI	CASTG	3 cut(s)	52, 58, 495
Tth111I	GACNNNGTC	2 cut(s)	47, 689
Van91I	CCANNNNNTGG	1 cut(s)	240
VpaK11BI	GGWCC	2 cut(s)	230, 614
XapI	RAATTY	2 cut(s)	516, 561
XceI	RCATGY	1 cut(s)	785
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.