Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

27780390 .. 27781669

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G308900.1_v2.0.a1.CDS.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCTGTGACTCCGCGCGGCTGTGGCTGTGACTCAAAGTATCCTGTTGTCCCTGGCCATGAGATTGCAGGCATTGTAAAAGAGGTGGGTTCCAATGTTCAGCGCTTCAAAGTTGGTGACCATATGGGAGTGGGAACTCATGTCAACTCATGCAGAGATTGTGAGTACTGCAACGACAGTTTTAATGGTGTTGATGTTGATGGTACAATCGCAAAAGGAGGATACTCCAGTCATATAGTTGTCCATGAAGGGTACTGCTTCAGCATACCAGAAAACTATCCATTGGCTTCGGCAGCCCCTCTACTTTGTGCTGGAATTACTGTTTATGCTTCGATGGTACGCCACATGATGAACCAACATGGTCACATGGCAGTGAAGTTTGGCAAGACATTTGGTTTGAATGTAACAATTTTCAGCACTAGCATATCCAAGAAAGAGGAAGCTTTGTGGTCTCAAAAAATAGTGGAAATGATGGCTCATCCTATAGGTTTAGCCCTGGTGAAGTCAGTAGACTTTATAATTGATATAGCATCTGGTGATTACCCTTTTGATCCATACATGGAACTATTGAAACTGGTGGAGTTCTGGTCTTGTATGAAAACCTTTTCTGGTAGTGTAACAGGTGGAACAAATGATATCCAAGAAATGATAGATTTCTTTGCTTCAAATGGAATTCATCCAATGATTGAAATAATTCCAATTCAATCTGCAAATGAAGCTGTTGAGAGGCTACTAAAAAATGTTGTGATATACGGGTTTGTGATTGATATTGAAAACTCCCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

263

Amino Acids

28.63

Weight (kDa)

5.52

Isoelectric Point (pI)

24.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	510
AccII	CGCG	2 cut(s)	16, 18
AciI	CCGC	2 cut(s)	14, 18
AclWI	GGATC	1 cut(s)	545
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	672
AcuI	CTGAAG	1 cut(s)	244
AfaI	GTAC	4 cut(s)	167, 205, 254, 339
AfeI	AGCGCT	1 cut(s)	104
AgsI	TTSAA	7 cut(s)	109, 400, 571, 666, 689, 704, 773
AjnI	CCWGG	2 cut(s)	52, 495
AluBI	AGCT	2 cut(s)	443, 719
AluI	AGCT	2 cut(s)	443, 719
Alw26I	GTCTC	1 cut(s)	456
AlwI	GGATC	1 cut(s)	545
Aor51HI	AGCGCT	1 cut(s)	104
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	672
ArsI	GACNNNNNNTTYG	2 cut(s)	379, 411
Asp700I	GAANNNNTTC	1 cut(s)	693
AspLEI	GCGC	2 cut(s)	18, 105
AsuHPI	GGTGA	3 cut(s)	128, 511, 548
BaeI	ACNNNNGTAYC	2 cut(s)	214, 247
BalI	TGGCCA	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	3 cut(s)	194, 328, 466
BciT130I	CCWGG	2 cut(s)	54, 497
BciVI	GTATCC	2 cut(s)	51, 215
BcoDI	GTCTC	1 cut(s)	456
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	106
BfuI	GTATCC	2 cut(s)	51, 215
BisI	GCNGC	2 cut(s)	19, 294
BlsI	GCNGC	2 cut(s)	20, 295
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	2 cut(s)	54, 497
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	2 cut(s)	54, 497
BmsI	GCATC	1 cut(s)	539
BpmI	CTGGAG	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	52, 495
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bse1I	ACTGG	2 cut(s)	228, 579
BseBI	CCWGG	2 cut(s)	54, 497
BseDI	CCNNGG	2 cut(s)	52, 495
BseGI	GGATG	2 cut(s)	478, 676
BseNI	ACTGG	2 cut(s)	228, 579
BseXI	GCAGC	1 cut(s)	305
Bsh1236I	CGCG	2 cut(s)	16, 18
BshFI	GGCC	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	456
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	57
Bso31I	GGTCTC	1 cut(s)	456
Bsp143I	GATC	1 cut(s)	550
BspACI	CCGC	2 cut(s)	14, 18
BspANI	GGCC	1 cut(s)	57
BspFNI	CGCG	2 cut(s)	16, 18
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	456
BsrI	ACTGG	2 cut(s)	228, 579
BssECI	CCNNGG	2 cut(s)	52, 495
BssMI	GATC	1 cut(s)	550
Bst2UI	CCWGG	2 cut(s)	54, 497
Bst4CI	ACNGT	2 cut(s)	179, 322
BstC8I	GCNNGC	1 cut(s)	70
BstEII	GGTNACC	1 cut(s)	116
BstF5I	GGATG	2 cut(s)	478, 676
BstFNI	CGCG	2 cut(s)	16, 18
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	2 cut(s)	18, 105
BstKTI	GATC	1 cut(s)	553
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	1 cut(s)	550
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 293, 716
BstNI	CCWGG	2 cut(s)	54, 497
BstPI	GGTNACC	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	52, 495
BstSFI	CTRYAG	1 cut(s)	483
BstUI	CGCG	2 cut(s)	16, 18
BstV1I	GCAGC	1 cut(s)	305
BsuI	GTATCC	2 cut(s)	51, 215
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	478, 676
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	70
CfoI	GCGC	2 cut(s)	18, 105
Csp6I	GTAC	4 cut(s)	166, 204, 253, 338
CviAII	CATG	8 cut(s)	59, 140, 150, 245, 346, 359, 367, 559
CviQI	GTAC	4 cut(s)	166, 204, 253, 338
DpnI	GATC	1 cut(s)	552
DpnII	GATC	1 cut(s)	550
EaeI	YGGCCR	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	637
Eco47III	AGCGCT	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	244
Eco91I	GGTNACC	1 cut(s)	116
EcoO65I	GGTNACC	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	672
EcoRII	CCWGG	2 cut(s)	52, 495
EcoRV	GATATC	1 cut(s)	637
FaeI	CATG	8 cut(s)	62, 143, 153, 248, 349, 362, 370, 562
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	8 cut(s)	58, 139, 149, 244, 345, 358, 366, 558
FauNDI	CATATG	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	2 cut(s)	19, 294
FokI	GGATG	2 cut(s)	465, 663
Fsp4HI	GCNGC	2 cut(s)	19, 294
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	2 cut(s)	17, 104
GluI	GCNGC	2 cut(s)	19, 294
GsuI	CTGGAG	1 cut(s)	211
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	57
HhaI	GCGC	2 cut(s)	18, 105
Hin1II	CATG	8 cut(s)	62, 143, 153, 248, 349, 362, 370, 562
Hin6I	GCGC	2 cut(s)	16, 103
HinP1I	GCGC	2 cut(s)	16, 103
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	2 cut(s)	10, 32
HphI	GGTGA	3 cut(s)	128, 511, 548
Hpy166II	GTNNAC	2 cut(s)	145, 511
Hpy8I	GTNNAC	2 cut(s)	145, 511
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	2 cut(s)	179, 322
HpyCH4V	TGCA	4 cut(s)	68, 153, 171, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 293, 716
Hsp92II	CATG	8 cut(s)	62, 143, 153, 248, 349, 362, 370, 562
HspAI	GCGC	2 cut(s)	16, 103
Kzo9I	GATC	1 cut(s)	550
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	1 cut(s)	539
MaeI	CTAG	1 cut(s)	420
MaeIII	GTNAC	6 cut(s)	7, 29, 116, 362, 403, 616
MalI	GATC	1 cut(s)	552
MboI	GATC	1 cut(s)	550
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	6 cut(s)	315, 408, 519, 672, 693, 699
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	2 cut(s)	4, 26
MnlI	CCTC	5 cut(s)	76, 212, 309, 430, 720
Mox20I	TGGCCA	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	693
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	57
MspR9I	CCNGG	2 cut(s)	54, 497
MvaI	CCWGG	2 cut(s)	54, 497
MvnI	CGCG	2 cut(s)	16, 18
MwoI	GCNNNNNNNGC	3 cut(s)	24, 293, 716
NdeI	CATATG	1 cut(s)	123
NdeII	GATC	1 cut(s)	550
NlaIII	CATG	8 cut(s)	62, 143, 153, 248, 349, 362, 370, 562
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	4 cut(s)	7, 29, 116, 362
PdmI	GAANNNNTTC	1 cut(s)	693
PkrI	GCNGC	2 cut(s)	20, 295
PleI	GAGTC	2 cut(s)	4, 26
PpsI	GAGTC	2 cut(s)	4, 26
PsiI	TTATAA	1 cut(s)	518
Psp6I	CCWGG	2 cut(s)	52, 495
PspEI	GGTNACC	1 cut(s)	116
PspGI	CCWGG	2 cut(s)	52, 495
PspN4I	GGNNCC	1 cut(s)	91
RsaI	GTAC	4 cut(s)	167, 205, 254, 339
RsaNI	GTAC	4 cut(s)	166, 204, 253, 338
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	2 cut(s)	19, 294
Sau3AI	GATC	1 cut(s)	550
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	2 cut(s)	4, 26
ScrFI	CCNGG	2 cut(s)	54, 497
SetI	ASST	6 cut(s)	87, 445, 490, 605, 625, 721
SfaNI	GCATC	1 cut(s)	539
SfcI	CTRYAG	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	371
Sse9I	AATT	6 cut(s)	315, 408, 519, 672, 693, 699
SsiI	CCGC	2 cut(s)	14, 18
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	52, 495
TaaI	ACNGT	2 cut(s)	179, 322
TaqI	TCGA	1 cut(s)	332
TasI	AATT	6 cut(s)	315, 408, 519, 672, 693, 699
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	4 cut(s)	7, 29, 116, 362
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	4 cut(s)	7, 29, 116, 362
TspDTI	ATGAA	5 cut(s)	261, 365, 611, 665, 729
TspRI	CASTG	1 cut(s)	378
XapI	RAATTY	1 cut(s)	672
XmiI	GTMKAC	1 cut(s)	510
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	1 cut(s)	420
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.