Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

28205221 .. 28208871

Gene Structure 3651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G317400.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTGGACATGGAGCATTTTTTCTTATAGTATCTTTCCAAAAGTTAACATTTATTATGTGCATTTCAAATATGTCTGGATACTTGGTGCATTTTATTTGCGTCTTACGGGCACCGAGACTGATGTGTACCAGTACCTAGAGCCTCTGTACAATGACTATCGGAAGTTGAGGAGAAATTTGGCTGACGGGAATTATGCCTTGACGCATGTGGATGAGGTTATTGATGAACTTCTGACAAAAGATTACTCATGTGACATTGCGATGCCAAGAATTAAGAAAAGATGGACTCTGGAAGCAACTGGTTCATTGGAACGCAGGAAAAGTGCATTGGAGGAGGACTTTGAGGAGAAGGGAGAGAAAGAGGAGAACGATCAACTTGATGGAGTGGATGATGAAGTCCATGGTAGGGATTATTATCGTGGCCGAAGCCCTGTAAGGGAAAGGGACAGGGGTAGAAGACGCGACAGTCACACATACAGGGACCACGATTATGACAGAGACTATGATAGGAATAGAGACTATGACAGGGAACACGGACATGGACGAGAAAGAGATAGGGATCGTGACTGTTATCGACTAAGAGATGACAAGGATCATGGTCACGATAGGGAGCGGGATAGGCAAAAGAGGGATTGTGGCAGGAGGAGGAGCTATTCAAGGAGCAGAAGTCGGAGTAGGGATCATGAGGGTCAGGATAATCGCAAAAGACATGGCCGCAGCAGCATGAGTCCCAGGAGACAGGATGGGCATGATGAGCATGGCACTTGTGAGGAGTCAAAGAAGAAGAAAGAAAAGAAGGAGAAGAAGACTGATGGGACAGACCATCCAGATCCAGATATTGCTGAAGTGAACAGGCTCCGTGCATCTCTTGGATTGAAACCTCTGAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

298

Amino Acids

35.99

Weight (kDa)

8.66

Isoelectric Point (pI)

54.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	465
AccB1I	GGYRCC	1 cut(s)	110
AccBSI	CCGCTC	1 cut(s)	613
AccII	CGCG	1 cut(s)	462
AciI	CCGC	2 cut(s)	613, 715
AclWI	GGATC	4 cut(s)	567, 600, 687, 824
AcoI	YGGCCR	2 cut(s)	421, 712
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	864
AfaI	GTAC	3 cut(s)	128, 134, 149
AfiI	CCNNNNNNNGG	2 cut(s)	406, 436
AgsI	TTSAA	3 cut(s)	67, 657, 877
AjnI	CCWGG	1 cut(s)	731
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	1 cut(s)	651
AluI	AGCT	1 cut(s)	651
Alw26I	GTCTC	4 cut(s)	110, 492, 510, 730
AlwI	GGATC	4 cut(s)	567, 600, 687, 824
AoxI	GGCC	2 cut(s)	421, 712
ApeKI	GCWGC	2 cut(s)	717, 720
ApoI	RAATTY	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	481
AvaII	GGWCC	1 cut(s)	481
BaeGI	GKGCMC	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	110
BbsI	GAAGAC	2 cut(s)	463, 812
BbvI	GCAGC	2 cut(s)	729, 732
BccI	CCATC	5 cut(s)	276, 374, 737, 806, 831
BciT130I	CCWGG	1 cut(s)	733
BciVI	GTATCC	1 cut(s)	72
BcoDI	GTCTC	4 cut(s)	110, 492, 510, 730
BfaI	CTAG	1 cut(s)	137
BfuI	GTATCC	1 cut(s)	72
BisI	GCNGC	3 cut(s)	715, 718, 721
BlsI	GCNGC	3 cut(s)	716, 719, 722
Bme1390I	CCNGG	1 cut(s)	733
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	3 cut(s)	112, 482, 857
BmrFI	CCNGG	1 cut(s)	733
BmsI	GCATC	2 cut(s)	252, 872
BpiI	GAAGAC	2 cut(s)	463, 812
BsaBI	GATNNNNATC	2 cut(s)	414, 558
BsaJI	CCNNGG	2 cut(s)	400, 731
BsaXI	ACNNNNNCTCC	2 cut(s)	652, 682
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 436
Bse1I	ACTGG	2 cut(s)	130, 304
Bse3DI	GCAATG	1 cut(s)	255
Bse8I	GATNNNNATC	2 cut(s)	414, 558
BseBI	CCWGG	1 cut(s)	733
BseDI	CCNNGG	2 cut(s)	400, 731
BseGI	GGATG	4 cut(s)	217, 394, 748, 823
BseJI	GATNNNNATC	2 cut(s)	414, 558
BseLI	CCNNNNNNNGG	2 cut(s)	406, 436
BseMI	GCAATG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	130, 304
BseRI	GAGGAG	7 cut(s)	184, 347, 359, 377, 658, 661, 785
BseSI	GKGCMC	1 cut(s)	113
BseXI	GCAGC	2 cut(s)	729, 732
Bsh1236I	CGCG	1 cut(s)	462
BshFI	GGCC	2 cut(s)	423, 714
BshNI	GGYRCC	1 cut(s)	110
BslFI	GGGAC	4 cut(s)	458, 494, 714, 829
BslI	CCNNNNNNNGG	2 cut(s)	406, 436
BsmAI	GTCTC	4 cut(s)	110, 492, 510, 730
BsmFI	GGGAC	4 cut(s)	458, 494, 714, 829
BsnI	GGCC	2 cut(s)	423, 714
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	5 cut(s)	370, 559, 592, 679, 829
Bsp19I	CCATGG	1 cut(s)	400
BspACI	CCGC	2 cut(s)	613, 715
BspANI	GGCC	2 cut(s)	423, 714
BspFNI	CGCG	1 cut(s)	462
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	3 cut(s)	112, 482, 857
BspPI	GGATC	4 cut(s)	567, 600, 687, 824
BspT107I	GGYRCC	1 cut(s)	110
BsrBI	CCGCTC	1 cut(s)	613
BsrDI	GCAATG	1 cut(s)	255
BsrGI	TGTACA	1 cut(s)	147
BsrI	ACTGG	2 cut(s)	130, 304
BssECI	CCNNGG	2 cut(s)	400, 731
BssMI	GATC	5 cut(s)	370, 559, 592, 679, 829
BssT1I	CCWWGG	1 cut(s)	400
Bst2UI	CCWGG	1 cut(s)	733
Bst4CI	ACNGT	2 cut(s)	467, 569
BstAUI	TGTACA	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	578
BstDSI	CCRYGG	1 cut(s)	400
BstF5I	GGATG	4 cut(s)	217, 394, 748, 823
BstFNI	CGCG	1 cut(s)	462
BstKTI	GATC	5 cut(s)	373, 562, 595, 682, 832
BstMAI	GTCTC	4 cut(s)	110, 492, 510, 730
BstMBI	GATC	5 cut(s)	370, 559, 592, 679, 829
BstMWI	GCNNNNNNNGC	3 cut(s)	619, 720, 754
BstNI	CCWGG	1 cut(s)	733
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	731
BstSLI	GKGCMC	1 cut(s)	113
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	729, 732
BstV2I	GAAGAC	2 cut(s)	463, 812
BstX2I	RGATCY	1 cut(s)	829
BstYI	RGATCY	1 cut(s)	829
BsuI	GTATCC	1 cut(s)	72
BsuRI	GGCC	2 cut(s)	423, 714
BtgI	CCRYGG	1 cut(s)	400
BtgZI	GCGATG	1 cut(s)	275
BtsCI	GGATG	4 cut(s)	217, 394, 748, 823
CciI	TCATGA	1 cut(s)	682
Cfr13I	GGNCC	1 cut(s)	481
CseI	GACGC	3 cut(s)	89, 211, 468
Csp6I	GTAC	3 cut(s)	127, 133, 148
CviJI	RGCY	7 cut(s)	142, 182, 423, 429, 651, 714, 856
CviKI_1	RGCY	7 cut(s)	142, 182, 423, 429, 651, 714, 856
CviQI	GTAC	3 cut(s)	127, 133, 148
DdeI	CTNAG	1 cut(s)	578
DpnI	GATC	5 cut(s)	372, 561, 594, 681, 831
DpnII	GATC	5 cut(s)	370, 559, 592, 679, 829
DrdI	GACNNNNNNGTC	1 cut(s)	465
DseDI	GACNNNNNNGTC	1 cut(s)	465
EaeI	YGGCCR	2 cut(s)	421, 712
Eco130I	CCWWGG	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	864
EcoRII	CCWGG	1 cut(s)	731
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
FaqI	GGGAC	4 cut(s)	458, 494, 714, 829
FauI	CCCGC	1 cut(s)	606
Fnu4HI	GCNGC	3 cut(s)	715, 718, 721
FokI	GGATG	4 cut(s)	224, 401, 755, 810
Fsp4HI	GCNGC	3 cut(s)	715, 718, 721
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	3 cut(s)	715, 718, 721
HaeIII	GGCC	2 cut(s)	423, 714
HgaI	GACGC	3 cut(s)	89, 211, 468
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	3 cut(s)	286, 727, 773
HpaI	GTTAAC	1 cut(s)	46
Hpy166II	GTNNAC	4 cut(s)	6, 46, 127, 850
Hpy188I	TCNGA	4 cut(s)	162, 234, 672, 885
Hpy188III	TCNNGA	8 cut(s)	76, 290, 563, 602, 683, 692, 827, 833
Hpy8I	GTNNAC	4 cut(s)	6, 46, 127, 850
HpyAV	CCTTC	2 cut(s)	343, 790
HpyCH4III	ACNGT	2 cut(s)	467, 569
HpyCH4V	TGCA	4 cut(s)	61, 89, 326, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	619, 720, 754
HpyF3I	CTNAG	1 cut(s)	578
KspAI	GTTAAC	1 cut(s)	46
Kzo9I	GATC	5 cut(s)	370, 559, 592, 679, 829
LmnI	GCTCC	5 cut(s)	12, 610, 648, 660, 861
Lsp1109I	GCAGC	2 cut(s)	729, 732
LweI	GCATC	2 cut(s)	252, 872
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	4 cut(s)	251, 467, 563, 599
MalI	GATC	5 cut(s)	372, 561, 594, 681, 831
MbiI	CCGCTC	1 cut(s)	613
MboI	GATC	5 cut(s)	370, 559, 592, 679, 829
MboII	GAAGA	5 cut(s)	468, 793, 796, 814, 817
MflI	RGATCY	1 cut(s)	829
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	3 cut(s)	175, 190, 270
MlyI	GAGTC	3 cut(s)	280, 736, 782
MmeI	TCCRAC	1 cut(s)	650
MseI	TTAA	2 cut(s)	45, 273
MslI	CAYNNNNRTG	4 cut(s)	210, 260, 489, 537
MspR9I	CCNGG	1 cut(s)	733
MvaI	CCWGG	1 cut(s)	733
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	619, 720, 754
NcoI	CCATGG	1 cut(s)	400
NdeII	GATC	5 cut(s)	370, 559, 592, 679, 829
NlaIV	GGNNCC	3 cut(s)	112, 482, 857
NmuCI	GTSAC	4 cut(s)	251, 467, 563, 599
NspI	RCATGY	1 cut(s)	209
PagI	TCATGA	1 cut(s)	682
PkrI	GCNGC	3 cut(s)	716, 719, 722
PleI	GAGTC	3 cut(s)	280, 735, 781
PpsI	GAGTC	3 cut(s)	280, 735, 781
Psp6I	CCWGG	1 cut(s)	731
PspGI	CCWGG	1 cut(s)	731
PspN4I	GGNNCC	3 cut(s)	112, 482, 857
PspPI	GGNCC	1 cut(s)	481
PsuI	RGATCY	1 cut(s)	829
RsaI	GTAC	3 cut(s)	128, 134, 149
RsaNI	GTAC	3 cut(s)	127, 133, 148
RseI	CAYNNNNRTG	4 cut(s)	210, 260, 489, 537
SaqAI	TTAA	2 cut(s)	45, 273
SatI	GCNGC	3 cut(s)	715, 718, 721
Sau3AI	GATC	5 cut(s)	370, 559, 592, 679, 829
Sau96I	GGNCC	1 cut(s)	481
SchI	GAGTC	3 cut(s)	280, 736, 782
ScrFI	CCNGG	1 cut(s)	733
SduI	GDGCHC	1 cut(s)	113
SetI	ASST	4 cut(s)	138, 219, 653, 883
SfaNI	GCATC	2 cut(s)	252, 872
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	4 cut(s)	210, 260, 489, 537
Sse9I	AATT	3 cut(s)	175, 190, 270
SsiI	CCGC	2 cut(s)	613, 715
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	731
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	2 cut(s)	467, 569
TaqI	TCGA	1 cut(s)	574
TasI	AATT	3 cut(s)	175, 190, 270
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	717
Tru1I	TTAA	2 cut(s)	45, 273
Tru9I	TTAA	2 cut(s)	45, 273
TseFI	GTSAC	4 cut(s)	251, 467, 563, 599
TseI	GCWGC	2 cut(s)	717, 720
Tsp45I	GTSAC	4 cut(s)	251, 467, 563, 599
TspDTI	ATGAA	3 cut(s)	240, 294, 408
TspGWI	ACGGA	2 cut(s)	549, 848
VpaK11BI	GGWCC	1 cut(s)	481
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	1 cut(s)	209
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.