Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

28439274 .. 28440642

Gene Structure 1369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G322100.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAAACCGCGAAGGGGTTCAGAGGAAGAATAGGCGGAGGGAGGAAGAAGGCAGTGTCAAAGTCGGCCCGAGCTGGGCTTCAATTTCCGGTGGGTCGGATCTGCCGTTTCATGAAAGCTGGTCGCTACGCCGATCGGATCGGAACCGGGGCTCCGATTTACATGGCTGCTGTTCTTGAATATTTGGCTGCTGAGGTTCTGGAGTTGGCGGGGAATGCGGCACGTGACAACAAGAAGACTCGGATCAGCCCGCGGCACGTGCTATTGGCAGTGAAAAACGACGAGGAGCTGGAGGAGCTTTTGAAAGGAGTGACCATAGCCAGTGGCGGTGTGCTTCCGCAGATAAACCCAGTTTTGCTTCCAAAGGAGACGACGTCGTCCAAAGCCTCTTCCAAGGCTCCCAAGCTCGTCAATCCCACCACGAACAAATCGTCTTTTTCTGCTGCTGTAGAAGATGCTCCCGACTTTGGGAATGAGGCAAACGACGCCGCTTCGGATGTCGCCGACAATGCGTCTCCCAATTCACCACCCAAGGAGGAGGCCTCAAGCCCCTCTTCTGGTGTTTCTGCTGTATCAGCAACTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

196

Amino Acids

20.27

Weight (kDa)

9.35

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	376
AatII	GACGTC	1 cut(s)	377
AccII	CGCG	2 cut(s)	11, 253
AciI	CCGC	9 cut(s)	9, 36, 209, 218, 251, 253, 327, 338, 489
AclWI	GGATC	3 cut(s)	107, 146, 251
AcvI	CACGTG	2 cut(s)	224, 259
AcyI	GRCGYC	2 cut(s)	374, 486
AfiI	CCNNNNNNNGG	5 cut(s)	15, 75, 467, 468, 557
AgsI	TTSAA	3 cut(s)	83, 179, 304
AhdI	GACNNNNNGTC	1 cut(s)	511
AloI	GAACNNNNNNTCC	2 cut(s)	136, 168
AluBI	AGCT	5 cut(s)	74, 119, 289, 298, 406
AluI	AGCT	5 cut(s)	74, 119, 289, 298, 406
Alw26I	GTCTC	2 cut(s)	362, 519
AlwI	GGATC	3 cut(s)	107, 146, 251
Ama87I	CYCGRG	1 cut(s)	69
AoxI	GGCC	2 cut(s)	66, 540
ApeKI	GCWGC	3 cut(s)	167, 188, 443
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	516
AvaI	CYCGRG	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	154
BbrPI	CACGTG	2 cut(s)	224, 259
BbsI	GAAGAC	1 cut(s)	242
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	3 cut(s)	154, 175, 430
BceAI	ACGGC	1 cut(s)	90
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	362, 519
BfmI	CTRYAG	1 cut(s)	447
BisI	GCNGC	6 cut(s)	168, 189, 219, 254, 444, 489
BlsI	GCNGC	6 cut(s)	169, 190, 220, 255, 445, 490
Bme1390I	CCNGG	1 cut(s)	148
BmeRI	GACNNNNNGTC	1 cut(s)	511
BmeT110I	CYCGRG	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	3 cut(s)	145, 153, 399
BmrFI	CCNGG	1 cut(s)	148
BmrI	ACTGGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	445
BmuI	ACTGGG	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	242
BplI	GAGNNNNNCTC	2 cut(s)	527, 559
BpmI	CTGGAG	2 cut(s)	221, 311
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	529
BpuMI	CCSGG	1 cut(s)	148
BsaAI	YACGTR	3 cut(s)	224, 259, 585
BsaHI	GRCGYC	2 cut(s)	374, 486
BsaJI	CCNNGG	4 cut(s)	147, 251, 393, 531
BsaWI	WCCGGW	1 cut(s)	88
BsaXI	ACNNNNNCTCC	4 cut(s)	136, 166, 359, 389
Bsc4I	CCNNNNNNNGG	5 cut(s)	15, 75, 467, 468, 557
Bse1I	ACTGG	2 cut(s)	321, 350
BseDI	CCNNGG	4 cut(s)	147, 251, 393, 531
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	5 cut(s)	15, 75, 467, 468, 557
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	2 cut(s)	321, 350
BseRI	GAGGAG	3 cut(s)	299, 308, 551
BseXI	GCAGC	3 cut(s)	154, 175, 430
BseYI	CCCAGC	1 cut(s)	74
Bsh1236I	CGCG	2 cut(s)	11, 253
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	2 cut(s)	68, 542
BsiEI	CGRYCG	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	89, 147
BslI	CCNNNNNNNGG	5 cut(s)	15, 75, 467, 468, 557
BsmAI	GTCTC	2 cut(s)	362, 519
BsmBI	CGTCTC	2 cut(s)	362, 519
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	68, 542
BsoBI	CYCGRG	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	4 cut(s)	99, 133, 138, 243
BspACI	CCGC	9 cut(s)	9, 36, 209, 218, 251, 253, 327, 338, 489
BspANI	GGCC	2 cut(s)	68, 542
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	2 cut(s)	11, 253
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	145, 153, 399
BspPI	GGATC	3 cut(s)	107, 146, 251
BsrI	ACTGG	2 cut(s)	321, 350
BssECI	CCNNGG	4 cut(s)	147, 251, 393, 531
BssMI	GATC	4 cut(s)	99, 133, 138, 243
BssNI	GRCGYC	2 cut(s)	374, 486
BssT1I	CCWWGG	2 cut(s)	393, 531
Bst6I	CTCTTC	2 cut(s)	394, 559
BstACI	GRCGYC	2 cut(s)	374, 486
BstBAI	YACGTR	3 cut(s)	224, 259, 585
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	502
BstFNI	CGCG	2 cut(s)	11, 253
BstKTI	GATC	4 cut(s)	102, 136, 141, 246
BstMAI	GTCTC	2 cut(s)	362, 519
BstMBI	GATC	4 cut(s)	99, 133, 138, 243
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 259, 295, 485, 509, 575
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	1 cut(s)	447
BstSNI	TACGTA	1 cut(s)	585
BstUI	CGCG	2 cut(s)	11, 253
BstV1I	GCAGC	3 cut(s)	154, 175, 430
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	68, 542
BtgI	CCRYGG	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	502
BtsI	GCAGTG	2 cut(s)	60, 276
BtsIMutI	CAGTG	3 cut(s)	60, 276, 328
Cac8I	GCNNGC	1 cut(s)	251
CciI	TCATGA	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	67
Cfr42I	CCGCGG	1 cut(s)	254
CseI	GACGC	2 cut(s)	494, 501
CviAII	CATG	2 cut(s)	112, 163
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	4 cut(s)	101, 135, 140, 245
DpnII	GATC	4 cut(s)	99, 133, 138, 243
DrdI	GACNNNNNNGTC	1 cut(s)	376
DriI	GACNNNNNGTC	1 cut(s)	511
DseDI	GACNNNNNNGTC	1 cut(s)	376
Eam1104I	CTCTTC	2 cut(s)	394, 559
Eam1105I	GACNNNNNGTC	1 cut(s)	511
EarI	CTCTTC	2 cut(s)	394, 559
EciI	GGCGGA	1 cut(s)	51
Eco105I	TACGTA	1 cut(s)	585
Eco130I	CCWWGG	2 cut(s)	393, 531
Eco147I	AGGCCT	1 cut(s)	542
Eco24I	GRGCYC	1 cut(s)	154
Eco72I	CACGTG	2 cut(s)	224, 259
Eco88I	CYCGRG	1 cut(s)	69
EcoT14I	CCWWGG	2 cut(s)	393, 531
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	2 cut(s)	393, 531
Esp3I	CGTCTC	2 cut(s)	362, 519
FaeI	CATG	2 cut(s)	115, 166
FaiI	YATR	3 cut(s)	113, 164, 317
FalI	AAGNNNNNCTT	2 cut(s)	538, 570
FatI	CATG	2 cut(s)	111, 162
FauI	CCCGC	2 cut(s)	202, 258
Fnu4HI	GCNGC	6 cut(s)	168, 189, 219, 254, 444, 489
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	6 cut(s)	168, 189, 219, 254, 444, 489
GluI	GCNGC	6 cut(s)	168, 189, 219, 254, 444, 489
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	2 cut(s)	221, 311
HaeIII	GGCC	2 cut(s)	68, 542
HapII	CCGG	2 cut(s)	89, 147
HgaI	GACGC	2 cut(s)	494, 501
Hin1I	GRCGYC	2 cut(s)	374, 486
Hin1II	CATG	2 cut(s)	115, 166
HinfI	GANTC	1 cut(s)	238
HpaII	CCGG	2 cut(s)	89, 147
HphI	GGTGA	1 cut(s)	516
Hpy188I	TCNGA	7 cut(s)	23, 99, 138, 143, 156, 243, 496
Hpy188III	TCNNGA	4 cut(s)	112, 176, 200, 461
Hpy99I	CGWCG	4 cut(s)	284, 376, 379, 488
HpyAV	CCTTC	2 cut(s)	7, 43
HpyCH4IV	ACGT	4 cut(s)	223, 258, 374, 584
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 259, 295, 485, 509, 575
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	4 cut(s)	223, 258, 374, 584
Hsp92I	GRCGYC	2 cut(s)	374, 486
Hsp92II	CATG	2 cut(s)	115, 166
KspI	CCGCGG	1 cut(s)	254
Kzo9I	GATC	4 cut(s)	99, 133, 138, 243
LmnI	GCTCC	5 cut(s)	157, 286, 295, 403, 463
LpnPI	CCDG	9 cut(s)	60, 102, 105, 160, 185, 275, 334, 363, 543
Lsp1109I	GCAGC	3 cut(s)	154, 175, 430
LweI	GCATC	1 cut(s)	445
MaeII	ACGT	4 cut(s)	223, 258, 374, 584
MaeIII	GTNAC	2 cut(s)	224, 310
MalI	GATC	4 cut(s)	101, 135, 140, 245
MboI	GATC	4 cut(s)	99, 133, 138, 243
MboII	GAAGA	6 cut(s)	39, 58, 247, 381, 464, 546
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	2 cut(s)	83, 520
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	253
MspI	CCGG	2 cut(s)	89, 147
MspR9I	CCNGG	1 cut(s)	148
Mva1269I	GAATGC	1 cut(s)	220
MvnI	CGCG	2 cut(s)	11, 253
MwoI	GCNNNNNNNGC	6 cut(s)	215, 259, 295, 485, 509, 575
NciI	CCSGG	1 cut(s)	148
NdeII	GATC	4 cut(s)	99, 133, 138, 243
NlaIII	CATG	2 cut(s)	115, 166
NlaIV	GGNNCC	3 cut(s)	145, 153, 399
NmuCI	GTSAC	2 cut(s)	224, 310
PagI	TCATGA	1 cut(s)	111
PceI	AGGCCT	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	2 cut(s)	103, 428
PctI	GAATGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	17
PflFI	GACNNNGTC	2 cut(s)	373, 376
PkrI	GCNGC	6 cut(s)	169, 190, 220, 255, 445, 490
Ple19I	CGATCG	1 cut(s)	136
PleI	GAGTC	1 cut(s)	232
PmaCI	CACGTG	2 cut(s)	224, 259
PmlI	CACGTG	2 cut(s)	224, 259
PpsI	GAGTC	1 cut(s)	232
Ppu21I	YACGTR	3 cut(s)	224, 259, 585
PspCI	CACGTG	2 cut(s)	224, 259
PspFI	CCCAGC	1 cut(s)	74
PspN4I	GGNNCC	3 cut(s)	145, 153, 399
PspPI	GGNCC	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	99
PsyI	GACNNNGTC	2 cut(s)	373, 376
PvuI	CGATCG	1 cut(s)	136
SacII	CCGCGG	1 cut(s)	254
SatI	GCNGC	6 cut(s)	168, 189, 219, 254, 444, 489
Sau3AI	GATC	4 cut(s)	99, 133, 138, 243
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	154
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	447
Sfr303I	CCGCGG	1 cut(s)	254
SgrBI	CCGCGG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
SnaBI	TACGTA	1 cut(s)	585
Sse9I	AATT	2 cut(s)	83, 520
SseBI	AGGCCT	1 cut(s)	542
SsiI	CCGC	9 cut(s)	9, 36, 209, 218, 251, 253, 327, 338, 489
SspI	AATATT	1 cut(s)	182
StuI	AGGCCT	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	2 cut(s)	393, 531
TaiI	ACGT	4 cut(s)	226, 261, 377, 587
TasI	AATT	2 cut(s)	83, 520
TauI	GCSGC	3 cut(s)	221, 256, 491
TscAI	CASTG	3 cut(s)	60, 276, 328
TseFI	GTSAC	2 cut(s)	224, 310
TseI	GCWGC	3 cut(s)	167, 188, 443
Tsp45I	GTSAC	2 cut(s)	224, 310
TspDTI	ATGAA	2 cut(s)	100, 128
TspRI	CASTG	3 cut(s)	60, 276, 328
Tth111I	GACNNNGTC	2 cut(s)	373, 376
XmnI	GAANNNNTTC	1 cut(s)	17
ZraI	GACGTC	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.