Prupe.6G331600_v2.0.a1

Allene oxide cyclase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
28906122 .. 28906866
745 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G331600.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 621 bp
ATGGCTTCTTCAACCTCTTCCCTCAGCTTCACCCCCTCCTTTGTGAAACTTGCCAACCCAAAGCTGCTGCCATCCATTCCCAGTAAGCCATTCCTACCCTTCAAGCTCCAAAGTCCATCTGATCTCAAACTCCACACTGCCACCTCTCATTTGAACTGCTTTCCATCTACCAAAACATCCCCATTGTTCACTTGCAGAATCCAAGCCAACCAATCATCTTCCTCTGAGCAAACAGCACCCACTGAACAAGCTCCACAAGTCCTTCATGTCTACGAGATCAATGAACTTGACCGCAAGCGCATTGGAATTACAGCAGGGATATCCACTTTGATCCAAAACAAACCAGAAAAGAACGACTATGGTCACATATCTGCGCAGGGTGCCTATTTGACTTATGAGGACTCTTATTTGGCTGTGACTGGTGGGTCTGGAATTTTTGAAGGTGTGTATGGTCAAGTAAAGTTGCACCAGCTTGTGTATCATCCTTTCAAAATATTGTACACCTTTTATCTAAAGGGTATCAAAGACTTGCCTGAACAGCTTCTTGGGAAACATGTGGAGCCTACCCCTGATGTTGTGCCCACTGCAGCTGCTCAGGCCATTTCTAATTTCATTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009642 GO:0009646 GO:0009648 GO:0009651 GO:0009682 GO:0009694 GO:0009695 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009864 GO:0009867 GO:0009908 GO:0009975 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010114 GO:0010218 GO:0010228 GO:0010243 GO:0010817 GO:0014070 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0022414 GO:0023052 GO:0031347 GO:0031349 GO:0031667 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033273 GO:0033274 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0045087 GO:0045088 GO:0045089 GO:0046394 GO:0046423 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048573 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071395 GO:0071495 GO:0071704 GO:0072330 GO:0080134 GO:0080186 GO:0090567 GO:0097305 GO:0098542 GO:1900367 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:2000068
KEGG Pathways
Metabolic & Signaling
ko00592 ko01100 ko01110 map00592 map01100 map01110
Pfam Domains
Protein Families
Allene_ox_cyc

Protein Analysis

207

Amino Acids

22.58

Weight (kDa)

7.79

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 424
Acc16I TGCGCA 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 380
AccI GTMKAC 1 cut(s) 270
AciI CCGC 1 cut(s) 292
AclWI GGATC 1 cut(s) 325
AcsI RAATTY 1 cut(s) 432
AfaI GTAC 1 cut(s) 500
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 5 cut(s) 12, 103, 154, 440, 490
AjuI GAANNNNNNNTTGG 2 cut(s) 528, 560
AluBI AGCT 7 cut(s) 27, 64, 106, 251, 472, 541, 590
AluI AGCT 7 cut(s) 27, 64, 106, 251, 472, 541, 590
AlwI GGATC 1 cut(s) 325
AoxI GGCC 1 cut(s) 597
ApeKI GCWGC 4 cut(s) 64, 67, 587, 590
ApoI RAATTY 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 2 cut(s) 300, 376
AsuHPI GGTGA 1 cut(s) 22
BaeGI GKGCMC 1 cut(s) 582
BanI GGYRCC 1 cut(s) 380
BbvCI CCTCAGC 1 cut(s) 23
BbvI GCAGC 4 cut(s) 51, 54, 577, 599
BccI CCATC 3 cut(s) 79, 124, 172
BfmI CTRYAG 1 cut(s) 585
BisI GCNGC 4 cut(s) 65, 68, 588, 591
BlsI GCNGC 4 cut(s) 66, 69, 589, 592
BmiI GGNNCC 2 cut(s) 382, 561
BmrI ACTGGG 1 cut(s) 75
BmuI ACTGGG 1 cut(s) 75
BoxI GACNNNNGTC 1 cut(s) 360
Bpu10I CCTNAGC 2 cut(s) 23, 594
Bse1I ACTGG 2 cut(s) 81, 424
BseGI GGATG 3 cut(s) 71, 176, 481
BseMII CTCAG 3 cut(s) 37, 216, 608
BseNI ACTGG 2 cut(s) 81, 424
BseSI GKGCMC 1 cut(s) 582
BseXI GCAGC 4 cut(s) 51, 54, 577, 599
BshFI GGCC 1 cut(s) 599
BshNI GGYRCC 1 cut(s) 380
BsnI GGCC 1 cut(s) 599
Bsp1286I GDGCHC 1 cut(s) 582
Bsp1407I TGTACA 1 cut(s) 498
Bsp143I GATC 3 cut(s) 121, 276, 330
BspACI CCGC 1 cut(s) 292
BspANI GGCC 1 cut(s) 599
BspCNI CTCAG 3 cut(s) 36, 217, 607
BspLI GGNNCC 2 cut(s) 382, 561
BspMAI CTGCAG 1 cut(s) 589
BspPI GGATC 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 380
BsrGI TGTACA 1 cut(s) 498
BsrI ACTGG 2 cut(s) 81, 424
BssMI GATC 3 cut(s) 121, 276, 330
Bst6I CTCTTC 1 cut(s) 22
BstAUI TGTACA 1 cut(s) 498
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 3 cut(s) 23, 225, 594
BstF5I GGATG 3 cut(s) 71, 176, 481
BstHHI GCGC 2 cut(s) 300, 376
BstKTI GATC 3 cut(s) 124, 279, 333
BstMBI GATC 3 cut(s) 121, 276, 330
BstMWI GCNNNNNNNGC 3 cut(s) 380, 538, 596
BstNSI RCATGY 1 cut(s) 557
BstPAI GACNNNNGTC 1 cut(s) 360
BstSFI CTRYAG 1 cut(s) 585
BstSLI GKGCMC 1 cut(s) 582
BstV1I GCAGC 4 cut(s) 51, 54, 577, 599
BsuRI GGCC 1 cut(s) 599
BtsCI GGATG 3 cut(s) 71, 176, 481
BtsI GCAGTG 2 cut(s) 135, 582
BtsIMutI CAGTG 3 cut(s) 135, 240, 582
Cac8I GCNNGC 1 cut(s) 296
CfoI GCGC 2 cut(s) 300, 376
Csp6I GTAC 1 cut(s) 499
CviAII CATG 2 cut(s) 266, 554
CviQI GTAC 1 cut(s) 499
DdeI CTNAG 3 cut(s) 23, 225, 594
DpnI GATC 3 cut(s) 123, 278, 332
DpnII GATC 3 cut(s) 121, 276, 330
DrdI GACNNNNNNGTC 1 cut(s) 424
DseDI GACNNNNNNGTC 1 cut(s) 424
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco32I GATATC 1 cut(s) 321
EcoRV GATATC 1 cut(s) 321
FaeI CATG 2 cut(s) 269, 557
FaiI YATR 6 cut(s) 267, 360, 368, 396, 450, 555
FatI CATG 2 cut(s) 265, 553
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 4 cut(s) 65, 68, 588, 591
FokI GGATG 3 cut(s) 58, 163, 468
Fsp4HI GCNGC 4 cut(s) 65, 68, 588, 591
FspI TGCGCA 1 cut(s) 375
GlaI GCGC 2 cut(s) 299, 375
GluI GCNGC 4 cut(s) 65, 68, 588, 591
HaeIII GGCC 1 cut(s) 599
HhaI GCGC 2 cut(s) 300, 376
Hin1II CATG 2 cut(s) 269, 557
Hin6I GCGC 2 cut(s) 298, 374
HinP1I GCGC 2 cut(s) 298, 374
HinfI GANTC 2 cut(s) 198, 401
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 3 cut(s) 189, 271, 501
Hpy188I TCNGA 2 cut(s) 121, 226
Hpy188III TCNNGA 1 cut(s) 429
Hpy8I GTNNAC 3 cut(s) 189, 271, 501
HpyAV CCTTC 3 cut(s) 109, 272, 434
HpyCH4V TGCA 3 cut(s) 195, 466, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 380, 538, 596
HpyF3I CTNAG 3 cut(s) 23, 225, 594
Hsp92II CATG 2 cut(s) 269, 557
HspAI GCGC 2 cut(s) 298, 374
Kzo9I GATC 3 cut(s) 121, 276, 330
LmnI GCTCC 3 cut(s) 111, 256, 559
Lsp1109I GCAGC 4 cut(s) 51, 54, 577, 599
MaeIII GTNAC 2 cut(s) 362, 415
MalI GATC 3 cut(s) 123, 278, 332
MboI GATC 3 cut(s) 121, 276, 330
MboII GAAGA 2 cut(s) 9, 210
MhlI GDGCHC 1 cut(s) 582
MluCI AATT 3 cut(s) 306, 432, 607
MlyI GAGTC 1 cut(s) 395
MnlI CCTC 6 cut(s) 25, 32, 46, 154, 232, 391
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 1 cut(s) 619
MspA1I CMGCKG 1 cut(s) 590
MwoI GCNNNNNNNGC 3 cut(s) 380, 538, 596
NdeII GATC 3 cut(s) 121, 276, 330
NlaIII CATG 2 cut(s) 269, 557
NlaIV GGNNCC 2 cut(s) 382, 561
NmuCI GTSAC 2 cut(s) 362, 415
NsbI TGCGCA 1 cut(s) 375
NspI RCATGY 1 cut(s) 557
PciI ACATGT 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 1 cut(s) 198
PkrI GCNGC 4 cut(s) 66, 69, 589, 592
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
PscI ACATGT 1 cut(s) 553
PshAI GACNNNNGTC 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 382, 561
PstI CTGCAG 1 cut(s) 589
PvuII CAGCTG 1 cut(s) 590
RsaI GTAC 1 cut(s) 500
RsaNI GTAC 1 cut(s) 499
SaqAI TTAA 1 cut(s) 619
SatI GCNGC 4 cut(s) 65, 68, 588, 591
Sau3AI GATC 3 cut(s) 121, 276, 330
SchI GAGTC 1 cut(s) 395
SduI GDGCHC 1 cut(s) 582
SfcI CTRYAG 1 cut(s) 585
Sse9I AATT 3 cut(s) 306, 432, 607
SsiI CCGC 1 cut(s) 292
SspI AATATT 1 cut(s) 495
TasI AATT 3 cut(s) 306, 432, 607
TatI WGTACW 1 cut(s) 498
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 1 cut(s) 619
Tru9I TTAA 1 cut(s) 619
TscAI CASTG 3 cut(s) 142, 247, 589
TseFI GTSAC 2 cut(s) 362, 415
TseI GCWGC 4 cut(s) 64, 67, 587, 590
Tsp45I GTSAC 2 cut(s) 362, 415
TspDTI ATGAA 3 cut(s) 254, 297, 601
TspRI CASTG 3 cut(s) 142, 247, 589
XapI RAATTY 1 cut(s) 432
XceI RCATGY 1 cut(s) 557
XmiI GTMKAC 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.