Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0029027

Physical Location & Seq

Genomic Coordinates Forward (+)

28912522 .. 28916175

Gene Structure 3654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G331900.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGCCCTTGAAATCCCTTCTGCGGATAAATTCAACATTGACCTTGGCGGGCCCAGGCTTTTGTTCCATGGTGACAAAGCCACTGACTTTATTATTCAAATCCGGTGTCGACCTATATGTGGAAAATGGGATCTTTAAATTCAAAAGCATCGATGGAGTTTGCGTTTTTTATGAGAGCAATGGGAAGTTACATATCTTTCCATATTCAAAAGGAGAAGTATTTGTGGACAAGAGCCTAAAGCTTATAGAGAAGTCCAAGTTGAGGAGTTTCATCAAGCTTGTTCAGCAGCAAGACGAAGAATGGAGCCAAATTTGTAGTGAAAGTTTGAAGATTTCGGAGGAGGATTTGGAGAGCCCTTTTGTTGATTTCTTAGATGGAATGCAGTTGTCAGCCAAGATTAAGTCGTTTATTCTGTACATTGCCATGGTAGATTATGATGAAGAAAATTTCAACTTGGAAGTTTGTAAAAGTAATCTGAAGACGAGAGCTGGGATAGAGCGTTTAGCACTTTACGACAAATCGTGGTCTGAAAATGGTCCTGGCCCTTGGATTTATCCTAAGTATGGTCATGGGGATTTATTAGCTTTCTTTGGCCGTCGTGCGGCTGTTAAAGGTTGCATTTGTCTAAGTTCAAGTAGAAGTATCTGTTTCTTGTTTTTCAAGGAAAAACATCCTACACCGTTGCTGGCCTGTACATACTTCTTTGCACACGTGTACCCTTTATTGTTTACTTGTTTATTTTGGGCCAATTTTGTTTGGTTTTGCTTACCACTTTCTCTTAGTTCTCTTGAAAATTCTATCATGCAGGCTATGCGAAGGCCAGTGACTGCTGTGCTTATGGACAAGGATAGTGGGAAATATAAGGGTGTTAGATTAGCTTCAGGTCAGGATTTGTTTAGTCATCAGCTAGTTTTGAATCCGGCCTTCACCATCCCGTTGGCACCAGCTCCATCTCCACCAGACTGTCTGAGAGAAGGCCTTCAAGGTTTAAGTCTTAAAGATACTAAAGGAAAGGTGGCAAGGGGAATATGCATCACAGCCAGTTCTGTGAAGCCAAAAACATCAAACTGTTTGCTTGTATATCCTCCTAGAACTTTGTACCCTGAACAGGATACCTTAATCGGGGTTATCCAAATAGCTGGCGGTTCGGGAATGGATGCTTGTCCAAAGGGCATGTCTGCTGATGGCACATTCCGGGTTATCCAGACAGAAGGGGGCAGTTCGGAAGCGGATGTTTGTCCAAAGGGCATGTATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005968 GO:0008150 GO:0009889 GO:0009893 GO:0010556 GO:0010604 GO:0017016 GO:0017137 GO:0019222 GO:0019899 GO:0031267 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051020 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:1902494 GO:1990234 GO:2000112 GO:2000539 GO:2000541

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

420

Amino Acids

46.47

Weight (kDa)

8.39

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029027)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G331900_v2.0.a1 Prupe.6G331900_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	940
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	5 cut(s)	22, 47, 602, 1143, 1229
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	592
AcsI	RAATTY	5 cut(s)	28, 137, 309, 445, 793
AcuI	CTGAAG	2 cut(s)	497, 864
AcvI	CACGTG	1 cut(s)	712
AfaI	GTAC	4 cut(s)	416, 694, 716, 1100
AfiI	CCNNNNNNNGG	7 cut(s)	21, 118, 261, 563, 601, 1108, 1122
AflIII	ACRYGT	2 cut(s)	709, 711
AjnI	CCWGG	2 cut(s)	52, 538
AluBI	AGCT	8 cut(s)	241, 277, 488, 584, 878, 907, 947, 1139
AluI	AGCT	8 cut(s)	241, 277, 488, 584, 878, 907, 947, 1139
AlwI	GGATC	1 cut(s)	137
AlwNI	CAGNNNCTG	1 cut(s)	827
AoxI	GGCC	8 cut(s)	49, 541, 592, 687, 744, 818, 921, 976
ApaI	GGGCCC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	5 cut(s)	28, 137, 309, 445, 793
ArsI	GACNNNNNNTTYG	4 cut(s)	90, 122, 1160, 1192
Asp700I	GAANNNNTTC	1 cut(s)	978
AspS9I	GGNCC	5 cut(s)	49, 50, 536, 542, 744
AsuC2I	CCSGG	1 cut(s)	1196
AsuHPI	GGTGA	2 cut(s)	82, 919
AvaII	GGWCC	1 cut(s)	536
BaeGI	GKGCMC	1 cut(s)	53
BaeI	ACNNNNGTAYC	2 cut(s)	698, 731
BanI	GGYRCC	1 cut(s)	940
BanII	GRGCYC	2 cut(s)	53, 356
BbrPI	CACGTG	1 cut(s)	712
BbsI	GAAGAC	1 cut(s)	485
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	5 cut(s)	146, 368, 938, 958, 1178
BceAI	ACGGC	1 cut(s)	579
BciT130I	CCWGG	2 cut(s)	54, 540
BciVI	GTATCC	1 cut(s)	1105
BcnI	CCSGG	1 cut(s)	1196
BfaI	CTAG	2 cut(s)	908, 1089
BfuI	GTATCC	1 cut(s)	1105
BisI	GCNGC	2 cut(s)	287, 603
BlsI	GCNGC	2 cut(s)	288, 604
Bme1390I	CCNGG	3 cut(s)	54, 540, 1196
Bme18I	GGWCC	1 cut(s)	536
BmgT120I	GGNCC	5 cut(s)	49, 50, 536, 542, 744
BmiI	GGNNCC	3 cut(s)	51, 305, 942
BmrFI	CCNGG	3 cut(s)	54, 540, 1196
BmsI	GCATC	3 cut(s)	156, 1041, 1147
BpiI	GAAGAC	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	1196
Bsa29I	ATCGAT	1 cut(s)	150
BsaAI	YACGTR	1 cut(s)	712
BsaJI	CCNNGG	5 cut(s)	42, 52, 66, 423, 545
BsaWI	WCCGGW	1 cut(s)	101
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	7 cut(s)	21, 118, 261, 563, 601, 1108, 1122
Bse1I	ACTGG	2 cut(s)	821, 1041
Bse3DI	GCAATG	2 cut(s)	184, 417
BseBI	CCWGG	2 cut(s)	54, 540
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	5 cut(s)	42, 52, 66, 423, 545
BseGI	GGATG	4 cut(s)	670, 930, 1162, 1237
BseLI	CCNNNNNNNGG	7 cut(s)	21, 118, 261, 563, 601, 1108, 1122
BseMI	GCAATG	2 cut(s)	184, 417
BseMII	CTCAG	1 cut(s)	959
BseNI	ACTGG	2 cut(s)	821, 1041
BseRI	GAGGAG	2 cut(s)	277, 353
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	298
BseYI	CCCAGC	1 cut(s)	488
BshFI	GGCC	8 cut(s)	51, 543, 594, 689, 746, 820, 923, 978
BshNI	GGYRCC	1 cut(s)	940
BshVI	ATCGAT	1 cut(s)	150
BsiSI	CCGG	3 cut(s)	102, 920, 1195
BslI	CCNNNNNNNGG	7 cut(s)	21, 118, 261, 563, 601, 1108, 1122
BsmI	GAATGC	1 cut(s)	384
BsnI	GGCC	8 cut(s)	51, 543, 594, 689, 746, 820, 923, 978
Bsp120I	GGGCCC	1 cut(s)	49
Bsp1286I	GDGCHC	2 cut(s)	53, 356
Bsp1407I	TGTACA	2 cut(s)	414, 692
Bsp143I	GATC	1 cut(s)	129
Bsp19I	CCATGG	2 cut(s)	66, 423
BspACI	CCGC	5 cut(s)	22, 47, 602, 1143, 1229
BspANI	GGCC	8 cut(s)	51, 543, 594, 689, 746, 820, 923, 978
BspCNI	CTCAG	1 cut(s)	960
BspDI	ATCGAT	1 cut(s)	150
BspLI	GGNNCC	3 cut(s)	51, 305, 942
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	940
BsrDI	GCAATG	2 cut(s)	184, 417
BsrGI	TGTACA	2 cut(s)	414, 692
BsrI	ACTGG	2 cut(s)	821, 1041
BssECI	CCNNGG	5 cut(s)	42, 52, 66, 423, 545
BssMI	GATC	1 cut(s)	129
BssT1I	CCWWGG	4 cut(s)	42, 66, 423, 545
Bst2UI	CCWGG	2 cut(s)	54, 540
Bst4CI	ACNGT	3 cut(s)	681, 965, 1070
BstAPI	GCANNNNNTGC	1 cut(s)	811
BstAUI	TGTACA	2 cut(s)	414, 692
BstBAI	YACGTR	1 cut(s)	712
BstC8I	GCNNGC	4 cut(s)	49, 687, 807, 1141
BstDEI	CTNAG	5 cut(s)	370, 558, 626, 779, 968
BstDSI	CCRYGG	2 cut(s)	66, 423
BstF5I	GGATG	4 cut(s)	670, 930, 1162, 1237
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 811
BstNI	CCWGG	2 cut(s)	54, 540
BstNSI	RCATGY	2 cut(s)	1177, 1252
BstSCI	CCNGG	3 cut(s)	52, 538, 1194
BstSLI	GKGCMC	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	1 cut(s)	485
BstX2I	RGATCY	1 cut(s)	129
BstXI	CCANNNNNNTGG	2 cut(s)	937, 1139
BstYI	RGATCY	1 cut(s)	129
Bsu15I	ATCGAT	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	1105
BsuRI	GGCC	8 cut(s)	51, 543, 594, 689, 746, 820, 923, 978
BsuTUI	ATCGAT	1 cut(s)	150
BtgI	CCRYGG	2 cut(s)	66, 423
BtsCI	GGATG	4 cut(s)	670, 930, 1162, 1237
BtsIMutI	CAGTG	2 cut(s)	80, 828
Cac8I	GCNNGC	4 cut(s)	49, 687, 807, 1141
CaiI	CAGNNNCTG	1 cut(s)	827
Cfr13I	GGNCC	5 cut(s)	49, 50, 536, 542, 744
ClaI	ATCGAT	1 cut(s)	150
Csp6I	GTAC	4 cut(s)	415, 693, 715, 1099
CspCI	CAANNNNNGTGG	2 cut(s)	832, 867
CviAII	CATG	6 cut(s)	67, 424, 569, 802, 1174, 1249
CviQI	GTAC	4 cut(s)	415, 693, 715, 1099
DdeI	CTNAG	5 cut(s)	370, 558, 626, 779, 968
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
DraI	TTTAAA	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	592
Eco130I	CCWWGG	4 cut(s)	42, 66, 423, 545
Eco147I	AGGCCT	1 cut(s)	978
Eco24I	GRGCYC	2 cut(s)	53, 356
Eco47I	GGWCC	1 cut(s)	536
Eco57I	CTGAAG	2 cut(s)	497, 864
Eco72I	CACGTG	1 cut(s)	712
EcoRII	CCWGG	2 cut(s)	52, 538
EcoT14I	CCWWGG	4 cut(s)	42, 66, 423, 545
EcoT22I	ATGCAT	1 cut(s)	1034
EcoT38I	GRGCYC	2 cut(s)	53, 356
ErhI	CCWWGG	4 cut(s)	42, 66, 423, 545
FaeI	CATG	6 cut(s)	70, 427, 572, 805, 1177, 1252
FatI	CATG	6 cut(s)	66, 423, 568, 801, 1173, 1248
FauI	CCCGC	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	287, 603
FokI	GGATG	4 cut(s)	657, 917, 1169, 1244
FriOI	GRGCYC	2 cut(s)	53, 356
Fsp4HI	GCNGC	2 cut(s)	287, 603
FspBI	CTAG	2 cut(s)	908, 1089
GluI	GCNGC	2 cut(s)	287, 603
GsaI	CCCAGC	1 cut(s)	492
HaeIII	GGCC	8 cut(s)	51, 543, 594, 689, 746, 820, 923, 978
HapII	CCGG	3 cut(s)	102, 920, 1195
Hin1II	CATG	6 cut(s)	70, 427, 572, 805, 1177, 1252
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	2 cut(s)	239, 275
HinfI	GANTC	1 cut(s)	916
HpaII	CCGG	3 cut(s)	102, 920, 1195
HphI	GGTGA	2 cut(s)	82, 919
Hpy166II	GTNNAC	4 cut(s)	109, 226, 715, 729
Hpy188I	TCNGA	5 cut(s)	337, 477, 529, 969, 1225
Hpy188III	TCNNGA	4 cut(s)	788, 887, 1149, 1204
Hpy8I	GTNNAC	4 cut(s)	109, 226, 715, 729
Hpy99I	CGWCG	1 cut(s)	600
HpyAV	CCTTC	6 cut(s)	26, 810, 934, 968, 989, 1205
HpyCH4III	ACNGT	3 cut(s)	681, 965, 1070
HpyCH4IV	ACGT	1 cut(s)	711
HpyCH4V	TGCA	5 cut(s)	382, 618, 707, 805, 1032
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 811
HpyF3I	CTNAG	5 cut(s)	370, 558, 626, 779, 968
HpySE526I	ACGT	1 cut(s)	711
Hsp92II	CATG	6 cut(s)	70, 427, 572, 805, 1177, 1252
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	2 cut(s)	303, 952
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	3 cut(s)	156, 1041, 1147
MaeI	CTAG	2 cut(s)	908, 1089
MaeII	ACGT	1 cut(s)	711
MaeIII	GTNAC	3 cut(s)	70, 186, 823
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	4 cut(s)	308, 340, 452, 490
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	2 cut(s)	53, 356
MluCI	AATT	6 cut(s)	28, 137, 309, 445, 748, 793
MnlI	CCTC	4 cut(s)	255, 331, 334, 1095
Mph1103I	ATGCAT	1 cut(s)	1034
MroXI	GAANNNNTTC	1 cut(s)	978
MseI	TTAA	6 cut(s)	135, 399, 609, 989, 996, 1118
MslI	CAYNNNNRTG	2 cut(s)	422, 1253
MspI	CCGG	3 cut(s)	102, 920, 1195
MspR9I	CCNGG	3 cut(s)	54, 540, 1196
Mva1269I	GAATGC	1 cut(s)	384
MvaI	CCWGG	2 cut(s)	54, 540
MwoI	GCNNNNNNNGC	2 cut(s)	283, 811
NciI	CCSGG	1 cut(s)	1196
NcoI	CCATGG	2 cut(s)	66, 423
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	6 cut(s)	70, 427, 572, 805, 1177, 1252
NlaIV	GGNNCC	3 cut(s)	51, 305, 942
NmuCI	GTSAC	2 cut(s)	70, 823
NsiI	ATGCAT	1 cut(s)	1034
NspI	RCATGY	2 cut(s)	1177, 1252
PceI	AGGCCT	1 cut(s)	978
PctI	GAATGC	1 cut(s)	384
PdmI	GAANNNNTTC	1 cut(s)	978
PfeI	GAWTC	1 cut(s)	916
PkrI	GCNGC	2 cut(s)	288, 604
PmaCI	CACGTG	1 cut(s)	712
PmlI	CACGTG	1 cut(s)	712
Ppu21I	YACGTR	1 cut(s)	712
Psp6I	CCWGG	2 cut(s)	52, 538
PspCI	CACGTG	1 cut(s)	712
PspFI	CCCAGC	1 cut(s)	488
PspGI	CCWGG	2 cut(s)	52, 538
PspN4I	GGNNCC	3 cut(s)	51, 305, 942
PspOMI	GGGCCC	1 cut(s)	49
PspPI	GGNCC	5 cut(s)	49, 50, 536, 542, 744
PstNI	CAGNNNCTG	1 cut(s)	827
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	4 cut(s)	416, 694, 716, 1100
RsaNI	GTAC	4 cut(s)	415, 693, 715, 1099
RseI	CAYNNNNRTG	2 cut(s)	422, 1253
SalI	GTCGAC	1 cut(s)	107
SaqAI	TTAA	6 cut(s)	135, 399, 609, 989, 996, 1118
SatI	GCNGC	2 cut(s)	287, 603
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	5 cut(s)	49, 50, 536, 542, 744
ScrFI	CCNGG	3 cut(s)	54, 540, 1196
SduI	GDGCHC	2 cut(s)	53, 356
SfaNI	GCATC	3 cut(s)	156, 1041, 1147
SinI	GGWCC	1 cut(s)	536
SmiMI	CAYNNNNRTG	2 cut(s)	422, 1253
Sse9I	AATT	6 cut(s)	28, 137, 309, 445, 748, 793
SseBI	AGGCCT	1 cut(s)	978
SsiI	CCGC	5 cut(s)	22, 47, 602, 1143, 1229
SspMI	CTAG	2 cut(s)	908, 1089
StuI	AGGCCT	1 cut(s)	978
StyD4I	CCNGG	3 cut(s)	52, 538, 1194
StyI	CCWWGG	4 cut(s)	42, 66, 423, 545
TaaI	ACNGT	3 cut(s)	681, 965, 1070
TaiI	ACGT	1 cut(s)	714
TaqI	TCGA	2 cut(s)	108, 150
TasI	AATT	6 cut(s)	28, 137, 309, 445, 748, 793
TatI	WGTACW	2 cut(s)	414, 692
TauI	GCSGC	1 cut(s)	605
TfiI	GAWTC	1 cut(s)	916
Tru1I	TTAA	6 cut(s)	135, 399, 609, 989, 996, 1118
Tru9I	TTAA	6 cut(s)	135, 399, 609, 989, 996, 1118
TscAI	CASTG	2 cut(s)	87, 828
TseFI	GTSAC	2 cut(s)	70, 823
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	2 cut(s)	70, 823
TspDTI	ATGAA	2 cut(s)	259, 453
TspRI	CASTG	2 cut(s)	87, 828
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	5 cut(s)	28, 137, 309, 445, 793
XceI	RCATGY	2 cut(s)	1177, 1252
XmiI	GTMKAC	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	978
XspI	CTAG	2 cut(s)	908, 1089
Zsp2I	ATGCAT	1 cut(s)	1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.