Prupe.6G333900_v2.0.a1

Domain of unknown function (DUF3444)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
29011346 .. 29013607
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G333900.1_v2.0.a1.CDS.5

Sequence Viewer

Length: 1497 bp
ATGGAATGCAACATAGAGGAGGCACTCAGAAAAAAAGGTGGTGATTTTTCAGGTACACTGAAGATGGCACAAAAGGCTAATGGAATCTTTCCCGATCTTGAGAAGATTCCTGAATTGGTTGAAAGGTGTAAAGCTCTTAAGAAAATTCCTCGATTACTTGCAAAGTGTGAAGTTCTCTATGTAATGTTTGAAGTTGGTCTTTCTCAATTGAATGGAGGCCATCACCCCTGGACGTCTTCAAGCAAAATGCAGGGTCGTTCTAACACTAACTTCAAGAAAGATGATAAAGAACCACGCACATTCACGTCATGTTGCCCTTCTTGTATGGGTAGATCAGAAGTAGCCTCACAAAGTAATGATGGAACTGAAAACCCGTCTGTCACAAGATTTAATGGAAATGCAGCCTTGAGTCCGGTGTCAAAGGCGAGAACTGCTGCTGATGGCAGCAGGGGGTCTAAGTCTAACCCTGAAAAGAATGATATTCGGCATGAGGTTGGAGTAGGGAAGGTTGGTTTTCAAATGTCCAAGTCTAGTCTAGAATCTGGAGAAAGTTGCAAAACTGGAAATAAAGCTAGAGCTGATTCTGGACATGTTGAACTAAATGGAGGCTATCGCCTTAGGAGGTCTTCAAGAAAAAGGCAGAGTATTTGTTACAATGAAAATCTATATCATGAAGGTGATTCTGTGTGTCCTCCCAAAAGGTTGAGGGACAGTCATATGTCCAGTTCTACTAAAAAGGAGCATCAGAATGCTGCTGTGACTGATGGGGTATTTACAAGGGATATGCCAACTGATTCTGCTGCTGCAGCTGCCGTGGATCGATACAAGAAAGAACCGAAACAAAAAGCAAGTGCCTCTCAAGAAGAAAGGTTTTGCAGCAAAAATTGCAAAACTGGTGAGTTTGAGTTGGAGTACAGAGCTGATGCTGCTTCTGGACCAAATTCAAACATTCCTGATCCTGAATTCAACAAGTTTGGGCTTGACGAGGATATGCCCAAAAACATTTTTAGAGCTAATCAGACATGGGCTCTTTATGCTCCAGAAGATGGCATGCCAAGATTCTATGCTCTTGTCAAGAAAGTGTACACCTCTGGATTTAAGCTGAAGATCACCTGGCTGGAGCAACAAGGAGTTGCCAGTTGCTTGTGGAAGGGAGAAACCTGGGCCCTCTACCACAACTGGGATATTGGATGGAGTTGTGAGCCTGAAAAGCATGTACCTAACAAATTTGAATATGTGGAAGTCCTGCAAGATTTTAAACAAAATGTTGGCATTGAAGTTGCTTACAAAAGGATTTTGCCGCCTAACGAGCTATATAGATTTTCTAATCAAATTCCCTCTGTCAAGCTGACTGGTGATGAAAGAGATGGTGTCCCAAAAGGGATGACTGGAATAAAAGAGAATGAAAAATTCCAAAAGAATGACCGCAACATTGAGCAAGTCTTTGGTCTGAAACATGTTGTGGATGAAGCCAAGCAACATCAAAATGTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

499

Amino Acids

55.89

Weight (kDa)

8.88

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 1046
AciI CCGC 2 cut(s) 1301, 1426
AclWI GGATC 2 cut(s) 825, 950
AcsI RAATTY 6 cut(s) 144, 940, 962, 1226, 1332, 1409
AcuI CTGAAG 2 cut(s) 80, 1124
AcyI GRCGYC 1 cut(s) 233
AfaI GTAC 4 cut(s) 55, 914, 1085, 1218
AfiI CCNNNNNNNGG 2 cut(s) 1046, 1180
AflII CTTAAG 1 cut(s) 137
AflIII ACRYGT 2 cut(s) 589, 1456
AjiI CACGTC 1 cut(s) 306
AjnI CCWGG 3 cut(s) 227, 1112, 1160
AluBI AGCT 9 cut(s) 134, 572, 578, 809, 920, 1013, 1102, 1312, 1348
AluI AGCT 9 cut(s) 134, 572, 578, 809, 920, 1013, 1102, 1312, 1348
AlwI GGATC 2 cut(s) 825, 950
AoxI GGCC 2 cut(s) 217, 1164
ApaI GGGCCC 1 cut(s) 1168
ApoI RAATTY 6 cut(s) 144, 940, 962, 1226, 1332, 1409
AspS9I GGNCC 3 cut(s) 935, 1164, 1165
AsuHPI GGTGA 6 cut(s) 53, 215, 689, 908, 1102, 1367
AvaII GGWCC 1 cut(s) 935
AxyI CCTNAGG 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 1168
BanII GRGCYC 2 cut(s) 1030, 1168
BbsI GAAGAC 2 cut(s) 228, 618
BccI CCATC 8 cut(s) 58, 228, 353, 434, 758, 1040, 1185, 1361
BceAI ACGGC 1 cut(s) 797
BciT130I CCWGG 3 cut(s) 229, 1114, 1162
BfaI CTAG 3 cut(s) 531, 536, 573
BfmI CTRYAG 1 cut(s) 804
BfrI CTTAAG 1 cut(s) 137
Bme1390I CCNGG 3 cut(s) 229, 1114, 1162
Bme18I GGWCC 1 cut(s) 935
BmgBI CACGTC 1 cut(s) 306
BmgT120I GGNCC 3 cut(s) 935, 1164, 1165
BmiI GGNNCC 1 cut(s) 1166
BmrFI CCNGG 3 cut(s) 229, 1114, 1162
BmrI ACTGGG 1 cut(s) 1189
BmsI GCATC 2 cut(s) 751, 913
BmuI ACTGGG 1 cut(s) 1189
BpiI GAAGAC 2 cut(s) 228, 618
BpmI CTGGAG 3 cut(s) 564, 1023, 1139
BpuEI CTTGAG 3 cut(s) 119, 427, 843
Bsa29I ATCGAT 1 cut(s) 820
BsaHI GRCGYC 1 cut(s) 233
BsaJI CCNNGG 3 cut(s) 227, 813, 1161
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 2 cut(s) 1046, 1180
Bse1I ACTGG 7 cut(s) 565, 723, 898, 1137, 1184, 1357, 1393
Bse21I CCTNAGG 1 cut(s) 617
BseBI CCWGG 3 cut(s) 229, 1114, 1162
BseCI ATCGAT 1 cut(s) 820
BseDI CCNNGG 3 cut(s) 227, 813, 1161
BseGI GGATG 3 cut(s) 1196, 1389, 1471
BseLI CCNNNNNNNGG 2 cut(s) 1046, 1180
BseMII CTCAG 1 cut(s) 40
BseNI ACTGG 7 cut(s) 565, 723, 898, 1137, 1184, 1357, 1393
BseRI GAGGAG 1 cut(s) 32
BseSI GKGCMC 1 cut(s) 1168
BshFI GGCC 2 cut(s) 219, 1166
BshVI ATCGAT 1 cut(s) 820
BsiSI CCGG 1 cut(s) 413
BslFI GGGAC 2 cut(s) 722, 1358
BslI CCNNNNNNNGG 2 cut(s) 1046, 1180
BsmFI GGGAC 2 cut(s) 722, 1358
BsmI GAATGC 2 cut(s) 11, 754
BsnI GGCC 2 cut(s) 219, 1166
Bsp120I GGGCCC 1 cut(s) 1164
Bsp1286I GDGCHC 2 cut(s) 1030, 1168
Bsp1407I TGTACA 1 cut(s) 1083
Bsp143I GATC 5 cut(s) 94, 332, 817, 955, 1107
BspACI CCGC 2 cut(s) 1301, 1426
BspANI GGCC 2 cut(s) 219, 1166
BspCNI CTCAG 1 cut(s) 39
BspDI ATCGAT 1 cut(s) 820
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 1 cut(s) 1166
BspMAI CTGCAG 1 cut(s) 808
BspPI GGATC 2 cut(s) 825, 950
BspTI CTTAAG 1 cut(s) 137
BsrGI TGTACA 1 cut(s) 1083
BsrI ACTGG 7 cut(s) 565, 723, 898, 1137, 1184, 1357, 1393
BssECI CCNNGG 3 cut(s) 227, 813, 1161
BssMI GATC 5 cut(s) 94, 332, 817, 955, 1107
BssNI GRCGYC 1 cut(s) 233
Bst2UI CCWGG 3 cut(s) 229, 1114, 1162
Bst4CI ACNGT 1 cut(s) 713
BstACI GRCGYC 1 cut(s) 233
BstAFI CTTAAG 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 885
BstAUI TGTACA 1 cut(s) 1083
BstC8I GCNNGC 1 cut(s) 1052
BstDEI CTNAG 3 cut(s) 26, 456, 617
BstDSI CCRYGG 1 cut(s) 813
BstF5I GGATG 3 cut(s) 1196, 1389, 1471
BstKTI GATC 5 cut(s) 97, 335, 820, 958, 1110
BstMBI GATC 5 cut(s) 94, 332, 817, 955, 1107
BstMWI GCNNNNNNNGC 9 cut(s) 74, 431, 806, 809, 885, 926, 1034, 1210, 1309
BstNI CCWGG 3 cut(s) 229, 1114, 1162
BstNSI RCATGY 4 cut(s) 593, 1054, 1217, 1460
BstSCI CCNGG 3 cut(s) 227, 1112, 1160
BstSFI CTRYAG 1 cut(s) 804
BstSLI GKGCMC 1 cut(s) 1168
BstV2I GAAGAC 2 cut(s) 228, 618
Bsu15I ATCGAT 1 cut(s) 820
Bsu36I CCTNAGG 1 cut(s) 617
BsuRI GGCC 2 cut(s) 219, 1166
BsuTUI ATCGAT 1 cut(s) 820
BtgI CCRYGG 1 cut(s) 813
BtrI CACGTC 1 cut(s) 306
BtsCI GGATG 3 cut(s) 1196, 1389, 1471
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 1052
CciI TCATGA 1 cut(s) 670
Cfr13I GGNCC 3 cut(s) 935, 1164, 1165
ClaI ATCGAT 1 cut(s) 820
Csp6I GTAC 4 cut(s) 54, 913, 1084, 1217
CviAII CATG 8 cut(s) 309, 488, 590, 671, 1023, 1051, 1214, 1457
CviQI GTAC 4 cut(s) 54, 913, 1084, 1217
DdeI CTNAG 3 cut(s) 26, 456, 617
DpnI GATC 5 cut(s) 96, 334, 819, 957, 1109
DpnII GATC 5 cut(s) 94, 332, 817, 955, 1107
DraI TTTAAA 1 cut(s) 1258
Eco24I GRGCYC 2 cut(s) 1030, 1168
Eco47I GGWCC 1 cut(s) 935
Eco57I CTGAAG 2 cut(s) 80, 1124
Eco81I CCTNAGG 1 cut(s) 617
EcoO109I RGGNCCY 1 cut(s) 1165
EcoRI GAATTC 1 cut(s) 962
EcoRII CCWGG 3 cut(s) 227, 1112, 1160
EcoT38I GRGCYC 2 cut(s) 1030, 1168
FaeI CATG 8 cut(s) 312, 491, 593, 674, 1026, 1054, 1217, 1460
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 2 cut(s) 722, 1358
FatI CATG 8 cut(s) 308, 487, 589, 670, 1022, 1050, 1213, 1456
FauNDI CATATG 1 cut(s) 717
FokI GGATG 3 cut(s) 1203, 1396, 1478
FriOI GRGCYC 2 cut(s) 1030, 1168
FspBI CTAG 3 cut(s) 531, 536, 573
GsuI CTGGAG 3 cut(s) 564, 1023, 1139
HaeIII GGCC 2 cut(s) 219, 1166
HapII CCGG 1 cut(s) 413
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 8 cut(s) 312, 491, 593, 674, 1026, 1054, 1217, 1460
HinfI GANTC 8 cut(s) 84, 106, 409, 539, 581, 680, 794, 1059
HpaII CCGG 1 cut(s) 413
HphI GGTGA 6 cut(s) 53, 215, 689, 908, 1102, 1367
Hpy166II GTNNAC 3 cut(s) 56, 1084, 1086
Hpy188I TCNGA 5 cut(s) 29, 337, 747, 1020, 1452
Hpy8I GTNNAC 3 cut(s) 56, 1084, 1086
HpyAV CCTTC 4 cut(s) 327, 499, 668, 1144
HpyCH4III ACNGT 1 cut(s) 713
HpyCH4IV ACGT 2 cut(s) 233, 305
HpyCH4V TGCA 9 cut(s) 9, 161, 250, 401, 555, 806, 876, 888, 1249
HpyF10VI GCNNNNNNNGC 9 cut(s) 74, 431, 806, 809, 885, 926, 1034, 1210, 1309
HpyF3I CTNAG 3 cut(s) 26, 456, 617
HpySE526I ACGT 2 cut(s) 233, 305
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 8 cut(s) 312, 491, 593, 674, 1026, 1054, 1217, 1460
Kzo9I GATC 5 cut(s) 94, 332, 817, 955, 1107
LmnI GCTCC 3 cut(s) 739, 1042, 1120
LweI GCATC 2 cut(s) 751, 913
MaeI CTAG 3 cut(s) 531, 536, 573
MaeII ACGT 2 cut(s) 233, 305
MaeIII GTNAC 3 cut(s) 379, 650, 757
MalI GATC 5 cut(s) 96, 334, 819, 957, 1109
MboI GATC 5 cut(s) 94, 332, 817, 955, 1107
MboII GAAGA 7 cut(s) 73, 115, 228, 618, 875, 1055, 1117
MfeI CAATTG 1 cut(s) 206
MhlI GDGCHC 2 cut(s) 1030, 1168
MluCI AATT 9 cut(s) 113, 144, 206, 883, 940, 962, 1226, 1332, 1409
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 2 cut(s) 475, 888
MseI TTAA 4 cut(s) 138, 390, 1098, 1257
MslI CAYNNNNRTG 3 cut(s) 675, 747, 1485
MspA1I CMGCKG 1 cut(s) 809
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 3 cut(s) 229, 1114, 1162
MunI CAATTG 1 cut(s) 206
Mva1269I GAATGC 2 cut(s) 11, 754
MvaI CCWGG 3 cut(s) 229, 1114, 1162
MwoI GCNNNNNNNGC 9 cut(s) 74, 431, 806, 809, 885, 926, 1034, 1210, 1309
NdeI CATATG 1 cut(s) 717
NdeII GATC 5 cut(s) 94, 332, 817, 955, 1107
NlaIII CATG 8 cut(s) 312, 491, 593, 674, 1026, 1054, 1217, 1460
NlaIV GGNNCC 1 cut(s) 1166
NmuCI GTSAC 2 cut(s) 379, 757
NspI RCATGY 4 cut(s) 593, 1054, 1217, 1460
PaeI GCATGC 1 cut(s) 1054
PagI TCATGA 1 cut(s) 670
PciI ACATGT 2 cut(s) 589, 1456
PctI GAATGC 2 cut(s) 11, 754
PfeI GAWTC 7 cut(s) 84, 106, 539, 581, 680, 794, 1059
PflMI CCANNNNNTGG 1 cut(s) 1046
PleI GAGTC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 417
PscI ACATGT 2 cut(s) 589, 1456
Psp6I CCWGG 3 cut(s) 227, 1112, 1160
PspGI CCWGG 3 cut(s) 227, 1112, 1160
PspN4I GGNNCC 1 cut(s) 1166
PspOMI GGGCCC 1 cut(s) 1164
PspPI GGNCC 3 cut(s) 935, 1164, 1165
PstI CTGCAG 1 cut(s) 808
PvuII CAGCTG 1 cut(s) 809
RsaI GTAC 4 cut(s) 55, 914, 1085, 1218
RsaNI GTAC 4 cut(s) 54, 913, 1084, 1217
RseI CAYNNNNRTG 3 cut(s) 675, 747, 1485
SaqAI TTAA 4 cut(s) 138, 390, 1098, 1257
Sau3AI GATC 5 cut(s) 94, 332, 817, 955, 1107
Sau96I GGNCC 3 cut(s) 935, 1164, 1165
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 3 cut(s) 229, 1114, 1162
SduI GDGCHC 2 cut(s) 1030, 1168
SfaNI GCATC 2 cut(s) 751, 913
SfcI CTRYAG 1 cut(s) 804
SinI GGWCC 1 cut(s) 935
SmiMI CAYNNNNRTG 3 cut(s) 675, 747, 1485
SmlI CTYRAG 4 cut(s) 98, 137, 406, 858
SmoI CTYRAG 4 cut(s) 98, 137, 406, 858
SphI GCATGC 1 cut(s) 1054
Sse9I AATT 9 cut(s) 113, 144, 206, 883, 940, 962, 1226, 1332, 1409
SsiI CCGC 2 cut(s) 1301, 1426
SspMI CTAG 3 cut(s) 531, 536, 573
StyD4I CCNGG 3 cut(s) 227, 1112, 1160
TaaI ACNGT 1 cut(s) 713
TaiI ACGT 2 cut(s) 236, 308
TaqI TCGA 2 cut(s) 151, 820
TasI AATT 9 cut(s) 113, 144, 206, 883, 940, 962, 1226, 1332, 1409
TatI WGTACW 2 cut(s) 912, 1083
TauI GCSGC 1 cut(s) 1303
TfiI GAWTC 7 cut(s) 84, 106, 539, 581, 680, 794, 1059
Tru1I TTAA 4 cut(s) 138, 390, 1098, 1257
Tru9I TTAA 4 cut(s) 138, 390, 1098, 1257
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 2 cut(s) 379, 757
Tsp45I GTSAC 2 cut(s) 379, 757
TspDTI ATGAA 5 cut(s) 672, 687, 1374, 1419, 1482
TspRI CASTG 1 cut(s) 63
Van91I CCANNNNNTGG 1 cut(s) 1046
Vha464I CTTAAG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 935
XapI RAATTY 6 cut(s) 144, 940, 962, 1226, 1332, 1409
XbaI TCTAGA 1 cut(s) 535
XceI RCATGY 4 cut(s) 593, 1054, 1217, 1460
XspI CTAG 3 cut(s) 531, 536, 573
ZraI GACGTC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.