Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

29262269 .. 29263093

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G337100.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGCTTCTTGGGTTCTTTTACCCGTAGCTTCAGTAACCGGTCGCTGTCTAGTGGCTACTGTGAGAACTGAGAGGTCCTCCTCCATCTGCGTTCGGTCTTCTTTGGACACTAATGTTTCTGACATGAGTGTAAATGCTCCAAAAGGGTTGTTTCCACCTGGACACTACCGAGCTCCCGAGCAAAGTGGCTATAATTGGAGCTGGGCTTGCAGGCATGTCAACAGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009509 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016491 GO:0016627 GO:0016635 GO:0031967 GO:0031975 GO:0042214 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046246 GO:0052886 GO:0052889 GO:0055114 GO:0071704 GO:1901175 GO:1901177 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

77

Amino Acids

8.31

Weight (kDa)

9.1

Isoelectric Point (pI)

65.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	15
AgeI	ACCGGT	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	3 cut(s)	29, 173, 201
AluI	AGCT	3 cut(s)	29, 173, 201
Alw21I	GWGCWC	1 cut(s)	175
Ama87I	CYCGRG	1 cut(s)	176
AsiGI	ACCGGT	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	75
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	175
BccI	CCATC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	159
BfaI	CTAG	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	90
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BsaWI	WCCGGW	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	43
BshTI	ACCGGT	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	61, 224
BstC8I	GCNNGC	2 cut(s)	208, 212
BstDEI	CTNAG	1 cut(s)	69
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	90
Cac8I	GCNNGC	2 cut(s)	208, 212
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	75
CspAI	ACCGGT	1 cut(s)	38
CviAII	CATG	2 cut(s)	124, 215
CviJI	RGCY	7 cut(s)	5, 29, 56, 173, 189, 201, 206
CviKI_1	RGCY	7 cut(s)	5, 29, 56, 173, 189, 201, 206
DdeI	CTNAG	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	175
FaeI	CATG	2 cut(s)	127, 218
FaiI	YATR	3 cut(s)	125, 192, 216
FatI	CATG	2 cut(s)	123, 214
FriOI	GRGCYC	1 cut(s)	175
FspBI	CTAG	1 cut(s)	50
GsaI	CCCAGC	1 cut(s)	205
HapII	CCGG	1 cut(s)	39
Hin1II	CATG	2 cut(s)	127, 218
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	39
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	1 cut(s)	220
HpyCH4III	ACNGT	2 cut(s)	61, 224
HpyCH4V	TGCA	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	127, 218
LmnI	GCTCC	3 cut(s)	142, 178, 198
LpnPI	CCDG	5 cut(s)	52, 144, 171, 187, 196
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	34
MboII	GAAGA	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	2 cut(s)	193, 226
MnlI	CCTC	3 cut(s)	66, 88, 91
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	207
NlaIII	CATG	2 cut(s)	127, 218
NspI	RCATGY	1 cut(s)	218
PinAI	ACCGGT	1 cut(s)	38
PpuMI	RGGWCCY	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	157
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	75
PspPPI	RGGWCCY	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	5 cut(s)	31, 77, 160, 175, 203
SinI	GGWCC	1 cut(s)	75
Sse9I	AATT	2 cut(s)	193, 226
SspMI	CTAG	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	61, 224
TaqII	GACCGA	1 cut(s)	84
TasI	AATT	2 cut(s)	193, 226
VpaK11BI	GGWCC	1 cut(s)	75
XceI	RCATGY	1 cut(s)	218
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.