Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

29405831 .. 29406849

Gene Structure 1019 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G340100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

CTGGATGAGAGGAAACATAGGAAGGATTTCAAACTTGAAAGAAATCTGCTATACCCTGACCCTTTTGACAAGAACCTCTCACCCGAAGAGAGAGAAATATATCACCGCTTCAAGATTTTCATGCGGTTCCACTCAAATGAAGAGCAGAAGGAATTGCTCAAGAATATCATTAAGGAACAACAGATTTTCAAAAGGATACTAGATCTTCAGGATGCTAGAACTGCTGGCTGTAGGACAGCTGCTGAAGCAAGCAGATACCTTGAGGATAAGAGGAAGAAGAAAACTGAAGAAAGTTCCTTAAGGATCAAAGAAAGCTCTCAGGCTGGTCTAAGTGGTAAAGGCTTGCAGATCAGTCCTTGGGGACCCTTTAAGGGATCCACGGCTATTTCCAGCTCCTTGGACTATTGGGATATCACTGCGCTAGTCGGGGCCGATTTACTCTCCCAAACCGAACAAAGACTTTGCAGTGAGATGAAAATCCTACCTTCACATTATCTGAACATGCTGCAGACCATCTCCACTGAAATTCCGAATGGCAATGTTAAGAAGAAATCTGATGCCCATATTCTGTTCAAGGTTGAACCATGCAAAGTTTATAGGGTTTACGATATGCTTGTGAAAAAGGGAATGGCTCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006996 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031056 GO:0031058 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0035065 GO:0035066 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901983 GO:1901985 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905269 GO:2000112 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding ZZ

Protein Analysis

214

Amino Acids

24.71

Weight (kDa)

9.29

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	106, 124
AclWI	GGATC	3 cut(s)	311, 369, 382
AcsI	RAATTY	1 cut(s)	525
AcuI	CTGAAG	3 cut(s)	191, 264, 306
AfiI	CCNNNNNNNGG	1 cut(s)	371
AflII	CTTAAG	1 cut(s)	298
AgsI	TTSAA	6 cut(s)	31, 38, 112, 190, 574, 581
AluBI	AGCT	3 cut(s)	239, 315, 393
AluI	AGCT	3 cut(s)	239, 315, 393
AlwI	GGATC	3 cut(s)	311, 369, 382
AlwNI	CAGNNNCTG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	429
ApeKI	GCWGC	2 cut(s)	239, 505
ApoI	RAATTY	1 cut(s)	525
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	2 cut(s)	362, 429
AsuHPI	GGTGA	2 cut(s)	72, 95
AvaII	GGWCC	1 cut(s)	362
BamHI	GGATCC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	226, 492
BccI	CCATC	1 cut(s)	521
BceAI	ACGGC	1 cut(s)	396
BciVI	GTATCC	1 cut(s)	189
BfaI	CTAG	3 cut(s)	200, 216, 422
BfmI	CTRYAG	2 cut(s)	229, 506
BfrI	CTTAAG	1 cut(s)	298
BfuI	GTATCC	1 cut(s)	189
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	2 cut(s)	240, 506
BlsI	GCNGC	2 cut(s)	241, 507
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	2 cut(s)	362, 429
BmiI	GGNNCC	5 cut(s)	128, 363, 364, 376, 430
BmsI	GCATC	2 cut(s)	202, 547
BpuEI	CTTGAG	3 cut(s)	143, 281, 618
BsaBI	GATNNNNATC	1 cut(s)	476
BsaJI	CCNNGG	3 cut(s)	356, 378, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse3DI	GCAATG	1 cut(s)	544
Bse8I	GATNNNNATC	1 cut(s)	476
BseDI	CCNNGG	3 cut(s)	356, 378, 396
BseGI	GGATG	2 cut(s)	10, 217
BseJI	GATNNNNATC	1 cut(s)	476
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMI	GCAATG	1 cut(s)	544
BseMII	CTCAG	1 cut(s)	332
BseXI	GCAGC	2 cut(s)	226, 492
BshFI	GGCC	1 cut(s)	431
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	1 cut(s)	431
Bsp143I	GATC	4 cut(s)	202, 303, 348, 374
BspACI	CCGC	2 cut(s)	106, 124
BspANI	GGCC	1 cut(s)	431
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	5 cut(s)	128, 363, 364, 376, 430
BspMAI	CTGCAG	1 cut(s)	510
BspPI	GGATC	3 cut(s)	311, 369, 382
BspQI	GCTCTTC	1 cut(s)	135
BspTI	CTTAAG	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	544
BssECI	CCNNGG	3 cut(s)	356, 378, 396
BssMI	GATC	4 cut(s)	202, 303, 348, 374
BssT1I	CCWWGG	2 cut(s)	356, 396
Bst6I	CTCTTC	2 cut(s)	81, 135
BstAFI	CTTAAG	1 cut(s)	298
BstC8I	GCNNGC	3 cut(s)	226, 250, 344
BstDEI	CTNAG	2 cut(s)	318, 329
BstDSI	CCRYGG	1 cut(s)	378
BstF5I	GGATG	2 cut(s)	10, 217
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	4 cut(s)	205, 306, 351, 377
BstMBI	GATC	4 cut(s)	202, 303, 348, 374
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 245
BstNSI	RCATGY	1 cut(s)	505
BstSFI	CTRYAG	2 cut(s)	229, 506
BstV1I	GCAGC	2 cut(s)	226, 492
BstX2I	RGATCY	2 cut(s)	202, 374
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstYI	RGATCY	2 cut(s)	202, 374
BsuI	GTATCC	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	431
BtgI	CCRYGG	1 cut(s)	378
BtsCI	GGATG	2 cut(s)	10, 217
BtsI	GCAGTG	2 cut(s)	414, 472
BtsIMutI	CAGTG	3 cut(s)	414, 472, 519
Cac8I	GCNNGC	3 cut(s)	226, 250, 344
CaiI	CAGNNNCTG	1 cut(s)	242
CfoI	GCGC	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	362, 429
CviAII	CATG	3 cut(s)	121, 502, 585
CviJI	RGCY	9 cut(s)	228, 239, 315, 323, 342, 383, 393, 431, 632
CviKI_1	RGCY	9 cut(s)	228, 239, 315, 323, 342, 383, 393, 431, 632
DdeI	CTNAG	2 cut(s)	318, 329
DpnI	GATC	4 cut(s)	204, 305, 350, 376
DpnII	GATC	4 cut(s)	202, 303, 348, 374
Eam1104I	CTCTTC	2 cut(s)	81, 135
EarI	CTCTTC	2 cut(s)	81, 135
Eco130I	CCWWGG	2 cut(s)	356, 396
Eco32I	GATATC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	362
Eco57I	CTGAAG	3 cut(s)	191, 264, 306
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRV	GATATC	1 cut(s)	412
EcoT14I	CCWWGG	2 cut(s)	356, 396
ErhI	CCWWGG	2 cut(s)	356, 396
FaeI	CATG	3 cut(s)	124, 505, 588
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	3 cut(s)	120, 501, 584
Fnu4HI	GCNGC	2 cut(s)	240, 506
FokI	GGATG	2 cut(s)	17, 224
Fsp4HI	GCNGC	2 cut(s)	240, 506
FspBI	CTAG	3 cut(s)	200, 216, 422
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	2 cut(s)	240, 506
HaeIII	GGCC	1 cut(s)	431
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	3 cut(s)	124, 505, 588
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HphI	GGTGA	2 cut(s)	72, 95
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	3 cut(s)	498, 531, 556
Hpy188III	TCNNGA	3 cut(s)	112, 160, 209
Hpy8I	GTNNAC	1 cut(s)	604
HpyAV	CCTTC	3 cut(s)	16, 142, 495
HpyCH4V	TGCA	4 cut(s)	346, 465, 508, 588
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 245
HpyF3I	CTNAG	2 cut(s)	318, 329
Hsp92II	CATG	3 cut(s)	124, 505, 588
HspAI	GCGC	1 cut(s)	419
KflI	GGGWCCC	1 cut(s)	362
Kzo9I	GATC	4 cut(s)	202, 303, 348, 374
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	398
LpnPI	CCDG	6 cut(s)	69, 194, 210, 305, 309, 403
Lsp1109I	GCAGC	2 cut(s)	226, 492
LweI	GCATC	2 cut(s)	202, 547
MaeI	CTAG	3 cut(s)	200, 216, 422
MalI	GATC	4 cut(s)	204, 305, 350, 376
MboI	GATC	4 cut(s)	202, 303, 348, 374
MboII	GAAGA	7 cut(s)	98, 152, 197, 286, 289, 299, 559
MflI	RGATCY	2 cut(s)	202, 374
MluCI	AATT	2 cut(s)	152, 525
MnlI	CCTC	4 cut(s)	3, 86, 256, 264
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	4 cut(s)	171, 299, 369, 543
MslI	CAYNNNNRTG	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	239
MspCI	CTTAAG	1 cut(s)	298
MwoI	GCNNNNNNNGC	2 cut(s)	221, 245
NdeII	GATC	4 cut(s)	202, 303, 348, 374
NlaIII	CATG	3 cut(s)	124, 505, 588
NlaIV	GGNNCC	5 cut(s)	128, 363, 364, 376, 430
NspI	RCATGY	1 cut(s)	505
PciSI	GCTCTTC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	241, 507
PpuMI	RGGWCCY	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	362
PspN4I	GGNNCC	5 cut(s)	128, 363, 364, 376, 430
PspPI	GGNCC	2 cut(s)	362, 429
PspPPI	RGGWCCY	1 cut(s)	362
PstI	CTGCAG	1 cut(s)	510
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	2 cut(s)	202, 374
PvuII	CAGCTG	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	4 cut(s)	171, 299, 369, 543
SatI	GCNGC	2 cut(s)	240, 506
Sau3AI	GATC	4 cut(s)	202, 303, 348, 374
Sau96I	GGNCC	2 cut(s)	362, 429
SetI	ASST	7 cut(s)	78, 241, 261, 317, 395, 487, 579
SfaNI	GCATC	2 cut(s)	202, 547
SfcI	CTRYAG	2 cut(s)	229, 506
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	4 cut(s)	158, 260, 298, 633
SmoI	CTYRAG	4 cut(s)	158, 260, 298, 633
Sse9I	AATT	2 cut(s)	152, 525
SsiI	CCGC	2 cut(s)	106, 124
SspMI	CTAG	3 cut(s)	200, 216, 422
StyI	CCWWGG	2 cut(s)	356, 396
TasI	AATT	2 cut(s)	152, 525
Tru1I	TTAA	4 cut(s)	171, 299, 369, 543
Tru9I	TTAA	4 cut(s)	171, 299, 369, 543
TscAI	CASTG	3 cut(s)	421, 472, 526
TseI	GCWGC	2 cut(s)	239, 505
TspDTI	ATGAA	3 cut(s)	109, 153, 488
TspRI	CASTG	3 cut(s)	421, 472, 526
Vha464I	CTTAAG	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	1 cut(s)	525
XceI	RCATGY	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	3 cut(s)	200, 216, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.