Prupe.6G349600_v2.0.a1

glycine-rich RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
29830091 .. 29832913
2823 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G349600.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 243 bp
ATGAAGGACCGTGAGATCGGTCGGTCCAGGTGTTTCGGATTCGTTACCTTCAGCGACGACAAGGACATGCGGAACGGGATCCAAGGATGCCAGAGCCTTCATTTGAGGACATTTGATCTTTGTGGTTGTGCACTAGCTCATGTTGGTGTGATGGACTTGCTGTGGTTCCCACGAATCTACCATAGGTTTTTAATGCTTTCTTTTGGGCCCGCTAAATTGTTTGCAACATGGTTTGATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

81

Amino Acids

9.29

Weight (kDa)

8.48

Isoelectric Point (pI)

31.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 70, 210
AclWI GGATC 2 cut(s) 73, 86
AcuI CTGAAG 1 cut(s) 34
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw21I GWGCWC 1 cut(s) 133
Alw44I GTGCAC 1 cut(s) 129
AlwI GGATC 2 cut(s) 73, 86
AoxI GGCC 1 cut(s) 206
ApaI GGGCCC 1 cut(s) 210
ApaLI GTGCAC 1 cut(s) 129
AspS9I GGNCC 4 cut(s) 7, 24, 206, 207
AvaII GGWCC 2 cut(s) 7, 24
BaeGI GKGCMC 2 cut(s) 133, 210
BamHI GGATCC 1 cut(s) 78
BanII GRGCYC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 133
BccI CCATC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 28
BfaI CTAG 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 28
Bme18I GGWCC 2 cut(s) 7, 24
BmgT120I GGNCC 4 cut(s) 7, 24, 206, 207
BmiI GGNNCC 3 cut(s) 80, 167, 208
BmrFI CCNGG 1 cut(s) 28
BmsI GCATC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 1 cut(s) 92
BseSI GKGCMC 2 cut(s) 133, 210
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 1 cut(s) 208
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 133
BsnI GGCC 1 cut(s) 208
Bsp120I GGGCCC 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 133, 210
Bsp143I GATC 3 cut(s) 15, 78, 115
BspACI CCGC 2 cut(s) 70, 210
BspANI GGCC 1 cut(s) 208
BspLI GGNNCC 3 cut(s) 80, 167, 208
BspPI GGATC 2 cut(s) 73, 86
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 3 cut(s) 15, 78, 115
BssT1I CCWWGG 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 210
BstF5I GGATG 1 cut(s) 92
BstKTI GATC 3 cut(s) 18, 81, 118
BstMBI GATC 3 cut(s) 15, 78, 115
BstMCI CGRYCG 1 cut(s) 22
BstNI CCWGG 1 cut(s) 28
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 26
BstSLI GKGCMC 2 cut(s) 133, 210
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BsuRI GGCC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 92
Cac8I GCNNGC 1 cut(s) 210
Cfr13I GGNCC 4 cut(s) 7, 24, 206, 207
CviAII CATG 3 cut(s) 67, 140, 228
CviJI RGCY 3 cut(s) 96, 137, 208
CviKI_1 RGCY 3 cut(s) 96, 137, 208
DpnI GATC 3 cut(s) 17, 80, 117
DpnII GATC 3 cut(s) 15, 78, 115
Eco130I CCWWGG 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 210
Eco47I GGWCC 2 cut(s) 7, 24
Eco57I CTGAAG 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 3 cut(s) 70, 143, 231
FaiI YATR 5 cut(s) 68, 141, 183, 229, 241
FatI CATG 3 cut(s) 66, 139, 227
FauI CCCGC 1 cut(s) 217
FokI GGATG 1 cut(s) 99
FriOI GRGCYC 1 cut(s) 210
FspBI CTAG 1 cut(s) 134
HaeIII GGCC 1 cut(s) 208
Hin1II CATG 3 cut(s) 70, 143, 231
HinfI GANTC 2 cut(s) 39, 174
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 131
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 58, 107
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 2 cut(s) 131, 224
Hsp92II CATG 3 cut(s) 70, 143, 231
Kzo9I GATC 3 cut(s) 15, 78, 115
LpnPI CCDG 3 cut(s) 13, 40, 104
LweI GCATC 1 cut(s) 77
MaeI CTAG 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 43
MalI GATC 3 cut(s) 17, 80, 117
MboI GATC 3 cut(s) 15, 78, 115
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 2 cut(s) 133, 210
MluCI AATT 1 cut(s) 215
MnlI CCTC 1 cut(s) 99
MseI TTAA 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 28
MvaI CCWGG 1 cut(s) 28
NdeII GATC 3 cut(s) 15, 78, 115
NlaIII CATG 3 cut(s) 70, 143, 231
NlaIV GGNNCC 3 cut(s) 80, 167, 208
NspI RCATGY 1 cut(s) 70
PfeI GAWTC 2 cut(s) 39, 174
Psp6I CCWGG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 26
PspN4I GGNNCC 3 cut(s) 80, 167, 208
PspOMI GGGCCC 1 cut(s) 206
PspPI GGNCC 4 cut(s) 7, 24, 206, 207
PsuI RGATCY 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 1 cut(s) 191
Sau3AI GATC 3 cut(s) 15, 78, 115
Sau96I GGNCC 4 cut(s) 7, 24, 206, 207
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 2 cut(s) 133, 210
SetI ASST 4 cut(s) 32, 50, 139, 188
SfaNI GCATC 1 cut(s) 77
SinI GGWCC 2 cut(s) 7, 24
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 1 cut(s) 215
SsiI CCGC 2 cut(s) 70, 210
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 26
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 11
TaqII GACCGA 2 cut(s) 8, 12
TasI AATT 1 cut(s) 215
TfiI GAWTC 2 cut(s) 39, 174
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TspDTI ATGAA 2 cut(s) 17, 89
VneI GTGCAC 1 cut(s) 129
VpaK11BI GGWCC 2 cut(s) 7, 24
XceI RCATGY 1 cut(s) 70
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.