Prupe.6G355000_v2.0.a1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
30167407 .. 30168929
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G355000.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 1176 bp
ATGCAAACCGAATTAATTAGGCGGATACAGATGAAAGGCAAGGCAAAGATCAAAGGCCTTGTAAATAGGCTCAGAAGATATGCTTGTTTGACATCCAATGTCATTGATGAAGCAAACCATGCTCATCATGATCAAACTCCGCTGTCTGATCACCTTAGCAGCCATGAGCATATTAGGCAAAGCTACAATGGCGGTTTGAACGAAAAGGAACTCAATGACCCGAGGTGGGGCTATTGCCATAGGTTTTGGGAGGACACTGTTGGGCTGGAACAAGATATCAAGGCATTAGTGGCAGAGCTTGCTCCAGCCGCTACTACAATTAGATCATCTAGAACACCCTCTAGAATTGTGGCAATCTGTGGCATGGCTGGTCTTGGCAAGACCACTCTTGCCAGAAAAGTTTACAATCATGATCAAATTAGGCGGCGTTTCGATTGCTTAGCGTGGGCTTATGTCTCTGAAAATTGCCAACCAAGGGATGTTTGGGAATCTATTTTGATTGACCTAACTACAAGAAATAGTTATAGTAGTACCTATGGATCATCTGATGAGGAAAGGGTTGCTAATATTAGAGCTCTGCCATATGCTGAGCTTGCCAGAAGGGTTTATCAAATTCAGCAAGAGAAGAGGTGTTTGATAGTTGTTGATGACATTTGGTCCACTGAGGACTGGGATCATCTATGTCACGCCTTTCCATCTCCATCTCCATCTCCATCTCCTGGTGGAAATAATGTCAAGGGGTGCAGCAGCGGCAGCAGAATATTGCTCACAACTCGTAATCGAGAAGTAGCTTCTCATGCAGACCCAAAAGCTCTTATTCATGAGCCAAAGCTTTTAATTGAAGAAGAGGGTTGGCAGTTATTTCTAAAAACGGTATTTGAAGGAGACAATCCAGGTTCCAGCATCAAGGCAAACACGTACGAGGAGGAGCTGGGCAGGGAACTGGTTGAAAGTTGTGTCGGGTTACCACTGGCCATCTATGTGCTTGGGACAATGTTGTCACTTAACATGAGAATACGACGACCTAAATGCGAACCCCAATTCCTGGAGTGGGAAACCGCAAACAGAGATGTTCTCTCCTACATCATGGAAACCAGATGCTACCATAACCCCCCCTTTCTGGATGCCATCTATTGTGATTTGCCTTTATTATTTAATGGCTATAATAACAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

392

Amino Acids

44.56

Weight (kDa)

6.37

Isoelectric Point (pI)

55.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 997
AccB7I CCANNNNNTGG 2 cut(s) 719, 1045
AciI CCGC 7 cut(s) 22, 140, 192, 309, 424, 750, 1059
AclWI GGATC 2 cut(s) 547, 681
AcoI YGGCCR 1 cut(s) 972
AcsI RAATTY 1 cut(s) 612
AfaI GTAC 2 cut(s) 532, 920
AfiI CCNNNNNNNGG 7 cut(s) 226, 227, 475, 719, 1045, 1051, 1120
AflIII ACRYGT 1 cut(s) 915
AgsI TTSAA 4 cut(s) 199, 842, 881, 950
AhdI GACNNNNNGTC 1 cut(s) 655
AjnI CCWGG 3 cut(s) 718, 892, 1044
AloI GAACNNNNNNTCC 2 cut(s) 1026, 1058
AluBI AGCT 9 cut(s) 183, 298, 575, 592, 791, 812, 832, 931, 1173
AluI AGCT 9 cut(s) 183, 298, 575, 592, 791, 812, 832, 931, 1173
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 2 cut(s) 460, 879
AlwI GGATC 2 cut(s) 547, 681
Ama87I CYCGRG 1 cut(s) 220
AoxI GGCC 2 cut(s) 55, 972
ApeKI GCWGC 4 cut(s) 159, 744, 747, 753
ApoI RAATTY 1 cut(s) 612
AseI ATTAAT 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 657
AsuHPI GGTGA 1 cut(s) 143
AvaI CYCGRG 1 cut(s) 220
AvaII GGWCC 1 cut(s) 657
BalI TGGCCA 1 cut(s) 974
BanII GRGCYC 1 cut(s) 577
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 4 cut(s) 171, 756, 759, 765
BccI CCATC 6 cut(s) 703, 709, 715, 721, 983, 1136
BcgI CGANNNNNNTGC 2 cut(s) 1011, 1045
BciT130I CCWGG 3 cut(s) 720, 894, 1046
BciVI GTATCC 1 cut(s) 18
BclI TGATCA 3 cut(s) 130, 148, 412
BcoDI GTCTC 2 cut(s) 460, 879
BfaI CTAG 3 cut(s) 330, 342, 1174
BfuI GTATCC 1 cut(s) 18
BisI GCNGC 7 cut(s) 160, 309, 425, 745, 748, 751, 754
BlpI GCTNAGC 2 cut(s) 439, 588
BlsI GCNGC 7 cut(s) 161, 310, 426, 746, 749, 752, 755
Bme1390I CCNGG 3 cut(s) 720, 894, 1046
Bme18I GGWCC 1 cut(s) 657
BmeRI GACNNNNNGTC 1 cut(s) 655
BmeT110I CYCGRG 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 657
BmiI GGNNCC 1 cut(s) 898
BmrFI CCNGG 3 cut(s) 720, 894, 1046
BmrI ACTGGG 1 cut(s) 679
BmsI GCATC 3 cut(s) 912, 1088, 1114
BmuI ACTGGG 1 cut(s) 679
BplI GAGNNNNNCTC 2 cut(s) 1059, 1091
BpmI CTGGAG 2 cut(s) 288, 1067
Bpu10I CCTNAGC 1 cut(s) 155
Bpu1102I GCTNAGC 2 cut(s) 439, 588
BsaAI YACGTR 1 cut(s) 918
BsaJI CCNNGG 2 cut(s) 221, 473
Bsc4I CCNNNNNNNGG 7 cut(s) 226, 227, 475, 719, 1045, 1051, 1120
Bse1I ACTGG 3 cut(s) 674, 948, 975
BseBI CCWGG 3 cut(s) 720, 894, 1046
BseDI CCNNGG 2 cut(s) 221, 473
BseGI GGATG 3 cut(s) 92, 484, 1129
BseLI CCNNNNNNNGG 7 cut(s) 226, 227, 475, 719, 1045, 1051, 1120
BseMII CTCAG 3 cut(s) 85, 579, 654
BseNI ACTGG 3 cut(s) 674, 948, 975
BseRI GAGGAG 2 cut(s) 938, 941
BseXI GCAGC 4 cut(s) 171, 756, 759, 765
BseYI CCCAGC 1 cut(s) 931
BsgI GTGCAG 1 cut(s) 763
BshFI GGCC 2 cut(s) 57, 974
BsiHKAI GWGCWC 1 cut(s) 577
BsiHKCI CYCGRG 1 cut(s) 220
BsiWI CGTACG 1 cut(s) 918
BslFI GGGAC 1 cut(s) 1003
BslI CCNNNNNNNGG 7 cut(s) 226, 227, 475, 719, 1045, 1051, 1120
BsmAI GTCTC 2 cut(s) 460, 879
BsmFI GGGAC 1 cut(s) 1003
BsnI GGCC 2 cut(s) 57, 974
BsoBI CYCGRG 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 577
Bsp143I GATC 7 cut(s) 48, 130, 148, 323, 412, 539, 673
Bsp1720I GCTNAGC 2 cut(s) 439, 588
BspACI CCGC 7 cut(s) 22, 140, 192, 309, 424, 750, 1059
BspANI GGCC 2 cut(s) 57, 974
BspCNI CTCAG 3 cut(s) 84, 580, 655
BspHI TCATGA 3 cut(s) 127, 409, 820
BspLI GGNNCC 1 cut(s) 898
BspPI GGATC 2 cut(s) 547, 681
BsrI ACTGG 3 cut(s) 674, 948, 975
BssECI CCNNGG 2 cut(s) 221, 473
BssMI GATC 7 cut(s) 48, 130, 148, 323, 412, 539, 673
BssT1I CCWWGG 1 cut(s) 473
Bst2UI CCWGG 3 cut(s) 720, 894, 1046
Bst4CI ACNGT 2 cut(s) 259, 874
Bst6I CTCTTC 2 cut(s) 620, 840
BstAPI GCANNNNNTGC 2 cut(s) 119, 299
BstBAI YACGTR 1 cut(s) 918
BstC8I GCNNGC 2 cut(s) 300, 594
BstDEI CTNAG 5 cut(s) 71, 155, 439, 588, 663
BstEII GGTNACC 1 cut(s) 963
BstF5I GGATG 3 cut(s) 92, 484, 1129
BstKTI GATC 7 cut(s) 51, 133, 151, 326, 415, 542, 676
BstMAI GTCTC 2 cut(s) 460, 879
BstMBI GATC 7 cut(s) 48, 130, 148, 323, 412, 539, 673
BstNI CCWGG 3 cut(s) 720, 894, 1046
BstPI GGTNACC 1 cut(s) 963
BstSCI CCNGG 3 cut(s) 718, 892, 1044
BstV1I GCAGC 4 cut(s) 171, 756, 759, 765
BsuI GTATCC 1 cut(s) 18
BsuRI GGCC 2 cut(s) 57, 974
BtsCI GGATG 3 cut(s) 92, 484, 1129
BtsIMutI CAGTG 3 cut(s) 255, 660, 968
Cac8I GCNNGC 2 cut(s) 300, 594
CciI TCATGA 3 cut(s) 127, 409, 820
Cfr13I GGNCC 1 cut(s) 657
Csp6I GTAC 2 cut(s) 531, 919
CviAII CATG 9 cut(s) 119, 128, 164, 364, 410, 797, 821, 1009, 1087
CviQI GTAC 2 cut(s) 531, 919
DdeI CTNAG 5 cut(s) 71, 155, 439, 588, 663
DpnI GATC 7 cut(s) 50, 132, 150, 325, 414, 541, 675
DpnII GATC 7 cut(s) 48, 130, 148, 323, 412, 539, 673
DrdI GACNNNNNNGTC 1 cut(s) 997
DriI GACNNNNNGTC 1 cut(s) 655
DseDI GACNNNNNNGTC 1 cut(s) 997
EaeI YGGCCR 1 cut(s) 972
Eam1104I CTCTTC 2 cut(s) 620, 840
Eam1105I GACNNNNNGTC 1 cut(s) 655
EarI CTCTTC 2 cut(s) 620, 840
EciI GGCGGA 1 cut(s) 37
Ecl136II GAGCTC 1 cut(s) 575
Eco130I CCWWGG 1 cut(s) 473
Eco147I AGGCCT 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 577
Eco32I GATATC 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 657
Eco53kI GAGCTC 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 220
Eco91I GGTNACC 1 cut(s) 963
EcoICRI GAGCTC 1 cut(s) 575
EcoO65I GGTNACC 1 cut(s) 963
EcoRII CCWGG 3 cut(s) 718, 892, 1044
EcoRV GATATC 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 473
EcoT38I GRGCYC 1 cut(s) 577
ErhI CCWWGG 1 cut(s) 473
FaeI CATG 9 cut(s) 122, 131, 167, 367, 413, 800, 824, 1012, 1090
FalI AAGNNNNNCTT 2 cut(s) 67, 99
FaqI GGGAC 1 cut(s) 1003
FatI CATG 9 cut(s) 118, 127, 163, 363, 409, 796, 820, 1008, 1086
FauNDI CATATG 1 cut(s) 583
FbaI TGATCA 3 cut(s) 130, 148, 412
Fnu4HI GCNGC 7 cut(s) 160, 309, 425, 745, 748, 751, 754
FokI GGATG 3 cut(s) 79, 491, 1136
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 7 cut(s) 160, 309, 425, 745, 748, 751, 754
FspBI CTAG 3 cut(s) 330, 342, 1174
GluI GCNGC 7 cut(s) 160, 309, 425, 745, 748, 751, 754
GsaI CCCAGC 1 cut(s) 935
GsuI CTGGAG 2 cut(s) 288, 1067
HaeIII GGCC 2 cut(s) 57, 974
Hin1II CATG 9 cut(s) 122, 131, 167, 367, 413, 800, 824, 1012, 1090
HindIII AAGCTT 1 cut(s) 830
HinfI GANTC 1 cut(s) 488
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 403, 660
Hpy188I TCNGA 4 cut(s) 74, 148, 460, 547
Hpy188III TCNNGA 7 cut(s) 128, 330, 342, 410, 782, 821, 1121
Hpy8I GTNNAC 2 cut(s) 403, 660
Hpy99I CGWCG 1 cut(s) 1023
HpyAV CCTTC 2 cut(s) 594, 875
HpyCH4III ACNGT 2 cut(s) 259, 874
HpyCH4IV ACGT 1 cut(s) 917
HpyCH4V TGCA 3 cut(s) 4, 744, 800
HpyF3I CTNAG 5 cut(s) 71, 155, 439, 588, 663
HpySE526I ACGT 1 cut(s) 917
Hsp92II CATG 9 cut(s) 122, 131, 167, 367, 413, 800, 824, 1012, 1090
Ksp22I TGATCA 3 cut(s) 130, 148, 412
Kzo9I GATC 7 cut(s) 48, 130, 148, 323, 412, 539, 673
LmnI GCTCC 2 cut(s) 307, 928
Lsp1109I GCAGC 4 cut(s) 171, 756, 759, 765
LweI GCATC 3 cut(s) 912, 1088, 1114
MaeI CTAG 3 cut(s) 330, 342, 1174
MaeII ACGT 1 cut(s) 917
MaeIII GTNAC 3 cut(s) 683, 963, 999
MalI GATC 7 cut(s) 50, 132, 150, 325, 414, 541, 675
MboI GATC 7 cut(s) 48, 130, 148, 323, 412, 539, 673
MboII GAAGA 4 cut(s) 87, 637, 854, 857
MhlI GDGCHC 1 cut(s) 577
MlsI TGGCCA 1 cut(s) 974
MluCI AATT 9 cut(s) 11, 15, 318, 345, 417, 463, 612, 837, 1040
MluNI TGGCCA 1 cut(s) 974
MnlI CCTC 9 cut(s) 216, 244, 349, 544, 621, 658, 841, 916, 919
Mox20I TGGCCA 1 cut(s) 974
MscI TGGCCA 1 cut(s) 974
MseI TTAA 4 cut(s) 14, 836, 1005, 1155
MslI CAYNNNNRTG 1 cut(s) 980
Msp20I TGGCCA 1 cut(s) 974
MspA1I CMGCKG 2 cut(s) 142, 750
MspR9I CCNGG 3 cut(s) 720, 894, 1046
MvaI CCWGG 3 cut(s) 720, 894, 1046
NdeI CATATG 1 cut(s) 583
NdeII GATC 7 cut(s) 48, 130, 148, 323, 412, 539, 673
NlaIII CATG 9 cut(s) 122, 131, 167, 367, 413, 800, 824, 1012, 1090
NlaIV GGNNCC 1 cut(s) 898
NmuCI GTSAC 2 cut(s) 683, 999
PagI TCATGA 3 cut(s) 127, 409, 820
PceI AGGCCT 1 cut(s) 57
PfeI GAWTC 1 cut(s) 488
Pfl23II CGTACG 1 cut(s) 918
PflMI CCANNNNNTGG 2 cut(s) 719, 1045
PfoI TCCNGGA 1 cut(s) 1044
PkrI GCNGC 7 cut(s) 161, 310, 426, 746, 749, 752, 755
Ppu21I YACGTR 1 cut(s) 918
PshBI ATTAAT 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 577
Psp6I CCWGG 3 cut(s) 718, 892, 1044
PspEI GGTNACC 1 cut(s) 963
PspFI CCCAGC 1 cut(s) 931
PspGI CCWGG 3 cut(s) 718, 892, 1044
PspLI CGTACG 1 cut(s) 918
PspN4I GGNNCC 1 cut(s) 898
PspPI GGNCC 1 cut(s) 657
RsaI GTAC 2 cut(s) 532, 920
RsaNI GTAC 2 cut(s) 531, 919
RseI CAYNNNNRTG 1 cut(s) 980
SacI GAGCTC 1 cut(s) 577
SaqAI TTAA 4 cut(s) 14, 836, 1005, 1155
SatI GCNGC 7 cut(s) 160, 309, 425, 745, 748, 751, 754
Sau3AI GATC 7 cut(s) 48, 130, 148, 323, 412, 539, 673
Sau96I GGNCC 1 cut(s) 657
ScrFI CCNGG 3 cut(s) 720, 894, 1046
SduI GDGCHC 1 cut(s) 577
SfaNI GCATC 3 cut(s) 912, 1088, 1114
SinI GGWCC 1 cut(s) 657
SmiMI CAYNNNNRTG 1 cut(s) 980
Sse9I AATT 9 cut(s) 11, 15, 318, 345, 417, 463, 612, 837, 1040
SseBI AGGCCT 1 cut(s) 57
SsiI CCGC 7 cut(s) 22, 140, 192, 309, 424, 750, 1059
SspI AATATT 2 cut(s) 568, 762
SspMI CTAG 3 cut(s) 330, 342, 1174
SstI GAGCTC 1 cut(s) 577
StuI AGGCCT 1 cut(s) 57
StyD4I CCNGG 3 cut(s) 718, 892, 1044
StyI CCWWGG 1 cut(s) 473
TaaI ACNGT 2 cut(s) 259, 874
TaiI ACGT 1 cut(s) 920
TaqI TCGA 2 cut(s) 432, 781
TasI AATT 9 cut(s) 11, 15, 318, 345, 417, 463, 612, 837, 1040
TauI GCSGC 3 cut(s) 311, 427, 753
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 4 cut(s) 14, 836, 1005, 1155
Tru9I TTAA 4 cut(s) 14, 836, 1005, 1155
TscAI CASTG 3 cut(s) 262, 667, 975
TseFI GTSAC 2 cut(s) 683, 999
TseI GCWGC 4 cut(s) 159, 744, 747, 753
Tsp45I GTSAC 2 cut(s) 683, 999
TspDTI ATGAA 3 cut(s) 47, 123, 809
TspRI CASTG 3 cut(s) 262, 667, 975
Van91I CCANNNNNTGG 2 cut(s) 719, 1045
VpaK11BI GGWCC 1 cut(s) 657
VspI ATTAAT 1 cut(s) 14
XapI RAATTY 1 cut(s) 612
XbaI TCTAGA 2 cut(s) 329, 341
XcmI CCANNNNNNNNNTGG 1 cut(s) 480
XspI CTAG 3 cut(s) 330, 342, 1174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.