Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

30239904 .. 30244350

Gene Structure 4447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G356500.1_v2.0.a1.CDS.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTTGTCCTTCTACAAGAACATGGTGAAGGTTGGAAAGTGTGTCACATATAATAAGGTTGTTGGAATTTTTGGTTTCACCTGTGAAGATCATATAGGAAAAGTTTTCCACCTGTGCAGGCAGTTCCTTCATTTCCAAGTTCCTTTCCAATCTTTCGGTGGCCAAGACAATATTCGTTGCTTAATTCCCTGCACGATTGACCAGGGAGAGACCGGTAAAATGTCGGCCAGTGATCCAAATTCTGCCATTTATGTAACTGATTTTGCAAAAGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006436 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

93

Amino Acids

10.29

Weight (kDa)

8.32

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	2 cut(s)	160, 225
AcsI	RAATTY	2 cut(s)	66, 238
AgeI	ACCGGT	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	201
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	2 cut(s)	160, 225
ApoI	RAATTY	2 cut(s)	66, 238
AsiGI	ACCGGT	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	37, 70
BalI	TGGCCA	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	212
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	228
BsgI	GTGCAG	2 cut(s)	136, 175
BshFI	GGCC	2 cut(s)	162, 227
BshTI	ACCGGT	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	213
BsmAI	GTCTC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	162, 227
Bso31I	GGTCTC	1 cut(s)	203
Bsp143I	GATC	2 cut(s)	88, 232
BspANI	GGCC	2 cut(s)	162, 227
BspPI	GGATC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	228
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	2 cut(s)	88, 232
Bst2UI	CCWGG	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	119
BstKTI	GATC	2 cut(s)	91, 235
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	2 cut(s)	88, 232
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	162, 227
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	212
CspAI	ACCGGT	1 cut(s)	212
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	2 cut(s)	162, 227
CviKI_1	RGCY	2 cut(s)	162, 227
DpnI	GATC	2 cut(s)	90, 234
DpnII	GATC	2 cut(s)	88, 232
EaeI	YGGCCR	2 cut(s)	160, 225
Eco31I	GGTCTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	25
FaiI	YATR	6 cut(s)	23, 49, 51, 93, 95, 252
FatI	CATG	1 cut(s)	21
HaeIII	GGCC	2 cut(s)	162, 227
HapII	CCGG	1 cut(s)	213
Hin1II	CATG	1 cut(s)	25
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	2 cut(s)	37, 70
HpyAV	CCTTC	3 cut(s)	19, 22, 137
HpyCH4V	TGCA	3 cut(s)	117, 192, 266
Hsp92II	CATG	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	88, 232
LpnPI	CCDG	8 cut(s)	94, 103, 125, 188, 202, 215, 226, 241
MaeIII	GTNAC	2 cut(s)	43, 253
MalI	GATC	2 cut(s)	90, 234
MboI	GATC	2 cut(s)	88, 232
MboII	GAAGA	1 cut(s)	98
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	3 cut(s)	66, 183, 238
MluNI	TGGCCA	1 cut(s)	162
MmeI	TCCRAC	2 cut(s)	13, 43
Mox20I	TGGCCA	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	162
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
NdeII	GATC	2 cut(s)	88, 232
NlaIII	CATG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	43
PinAI	ACCGGT	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	182
Sau3AI	GATC	2 cut(s)	88, 232
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	4 cut(s)	33, 60, 83, 114
Sse9I	AATT	3 cut(s)	66, 183, 238
SspI	AATATT	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	201
TasI	AATT	3 cut(s)	66, 183, 238
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	235
XapI	RAATTY	2 cut(s)	66, 238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.