Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

30273034 .. 30275308

Gene Structure 2275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G357000.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGATCATCACCAGCAGATCCCAGCCACCCTACGACGACCTCATTAGCATCGCCCGTCTCCTCGGTGCTGAAGCTTCCAGCGTAGCCTCATGTAACAACACCTCATCTAATGATCATGCCGGAGCAAAGCTGAAAGTTGAGGTGGGATGTGCATGTCCTAGTGCAAAGCAAATGGAAAATGGGGTGATCTCCCTGCTGACTTACATGGTGACCTGGAATGACACAGTTACACTGATTGGAGAAAAGTTTGGGGTAGATGTGCACAGCGTACTAGATGCAAATATGTTTTCATGGAGCAGCACCATCTACCCATTTACTCCTATTTTGGTTCCACTCAAACATGAAATTTGCACTGCAAATCCAGTTGGGACTAAATCATTATGCCCTGGATGGGGAGATTCAGGGGATTTCGGTTGCATATGTGGTAGTAAACGGTTCAAAGGCAGTCAGGTTATCTTAGGTGTTTGCCTTGGGACTGTATTCTTATGCATGTTTCCTTTGGGTTACAAGTTACATCAATTCCTGAAGAGAAGAAGATGCAAAATTCGCAAAGAAAAGTTCTTCAAGCAAAATGGTGGCTACTTGTTACAACAAAAATTCCATGCTAACAACACTACAGTGCTGGCAAAGATCTTTACTGCAGAAGAGCTGCAGGAAGCAGCAGATAATTTAAACGAGAGCCGGTTTCTTGGTCAGGGAGGCTATGGCACAGTTTACAAAGGAATGTTACTTGATGGCAGCACAGTTGCGGTTAAGAGGTCAAAGTGTGGGGACACCTCGTGTTTATATCTCATCCCAAATAAATCACCGAAACATACCCTCTCATGGGATACTCGTCTACGAATTGCATGTGAAGTTGCTGGAGCAGTAGCATATATGCACTCAGCAGCATCAAGCTCCATTCTTCATCGTGATATCAAATCGCCCAACGTACTCTTGGATGACAAGTTTAGTGCAAAAGGTACTTTTGGGTACATTGATCCAGAGTACTTCCAGTCAAATAGGTTCACAGAGAAAAGCGACGTCTATAGCTTTGGGAGAAGAGATGATGGGAGAAATCTTATGATGCACTTCGTTTCTTTGGCGAAGGAGAATCAACTTCATCAGATTTTGGATCCTCGATTGGCTGGAGAAGCGGAGCCAAAGGATATTGATGCCATTGCAAGGCTTGCAACCAGATGCTTAAGATCAAATGGAAAAAGGAGACCAACAATGAGAGAGGATAGCATTGTCTCCACCTACGAACTGGGTTTTACTTCAACCTTGGAATCAGCGAGATGTGGAAGAGTTTTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0030312 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

433

Amino Acids

47.78

Weight (kDa)

8.92

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1026
AccI	GTMKAC	1 cut(s)	838
AciI	CCGC	2 cut(s)	749, 1136
AclWI	GGATC	4 cut(s)	12, 974, 1109, 1122
AcsI	RAATTY	3 cut(s)	345, 543, 596
AcuI	CTGAAG	2 cut(s)	90, 545
AcyI	GRCGYC	1 cut(s)	1023
AdeI	CACNNNGTG	1 cut(s)	780
AfaI	GTAC	5 cut(s)	270, 933, 964, 974, 989
AfiI	CCNNNNNNNGG	5 cut(s)	391, 392, 825, 826, 1164
AflII	CTTAAG	1 cut(s)	1183
AgsI	TTSAA	3 cut(s)	439, 565, 1260
AjnI	CCWGG	2 cut(s)	212, 385
AleI	CACNNNNGTG	1 cut(s)	617
AluBI	AGCT	5 cut(s)	74, 130, 649, 897, 1032
AluI	AGCT	5 cut(s)	74, 130, 649, 897, 1032
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	3 cut(s)	62, 1198, 1237
Alw44I	GTGCAC	1 cut(s)	260
AlwI	GGATC	4 cut(s)	12, 974, 1109, 1122
ApaLI	GTGCAC	1 cut(s)	260
ApeKI	GCWGC	5 cut(s)	297, 649, 659, 738, 887
ApoI	RAATTY	3 cut(s)	345, 543, 596
AsuHPI	GGTGA	3 cut(s)	196, 220, 798
BaeGI	GKGCMC	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	1114
BauI	CACGAG	1 cut(s)	778
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	5 cut(s)	309, 636, 671, 750, 899
BccI	CCATC	4 cut(s)	311, 384, 728, 1043
BciT130I	CCWGG	2 cut(s)	214, 387
BciVI	GTATCC	1 cut(s)	823
BclI	TGATCA	2 cut(s)	3, 112
BcoDI	GTCTC	3 cut(s)	62, 1198, 1237
BfaI	CTAG	2 cut(s)	159, 272
BfmI	CTRYAG	4 cut(s)	615, 639, 650, 1027
BfrI	CTTAAG	1 cut(s)	1183
BfuI	GTATCC	1 cut(s)	823
BglII	AGATCT	1 cut(s)	630
BisI	GCNGC	5 cut(s)	298, 650, 660, 739, 888
BlsI	GCNGC	5 cut(s)	299, 651, 661, 740, 889
BmcAI	AGTACT	1 cut(s)	989
Bme1390I	CCNGG	2 cut(s)	214, 387
BmiI	GGNNCC	3 cut(s)	330, 1116, 1140
BmrFI	CCNGG	2 cut(s)	214, 387
BmrI	ACTGGG	1 cut(s)	1256
BmsI	GCATC	7 cut(s)	57, 265, 527, 899, 1056, 1144, 1169
BmuI	ACTGGG	1 cut(s)	1256
BpmI	CTGGAG	2 cut(s)	882, 1149
BsaHI	GRCGYC	1 cut(s)	1023
BsaI	GGTCTC	1 cut(s)	1198
BsaJI	CCNNGG	4 cut(s)	61, 385, 469, 1263
Bsc4I	CCNNNNNNNGG	5 cut(s)	391, 392, 825, 826, 1164
Bse118I	RCCGGY	1 cut(s)	681
Bse1I	ACTGG	3 cut(s)	362, 994, 1251
Bse3DI	GCAATG	1 cut(s)	1158
BseBI	CCWGG	2 cut(s)	214, 387
BseDI	CCNNGG	4 cut(s)	61, 385, 469, 1263
BseGI	GGATG	4 cut(s)	152, 395, 792, 946
BseLI	CCNNNNNNNGG	5 cut(s)	391, 392, 825, 826, 1164
BseMI	GCAATG	1 cut(s)	1158
BseMII	CTCAG	1 cut(s)	897
BseNI	ACTGG	3 cut(s)	362, 994, 1251
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	5 cut(s)	309, 636, 671, 750, 899
BseYI	CCCAGC	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	120, 682
BslFI	GGGAC	3 cut(s)	382, 487, 785
BslI	CCNNNNNNNGG	5 cut(s)	391, 392, 825, 826, 1164
BsmAI	GTCTC	3 cut(s)	62, 1198, 1237
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	3 cut(s)	382, 487, 785
Bso31I	GGTCTC	1 cut(s)	1198
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	8 cut(s)	3, 17, 112, 186, 630, 979, 1114, 1187
BspACI	CCGC	2 cut(s)	749, 1136
BspCNI	CTCAG	1 cut(s)	896
BspLI	GGNNCC	3 cut(s)	330, 1116, 1140
BspMAI	CTGCAG	2 cut(s)	643, 654
BspPI	GGATC	4 cut(s)	12, 974, 1109, 1122
BspQI	GCTCTTC	1 cut(s)	639
BspTI	CTTAAG	1 cut(s)	1183
BspTNI	GGTCTC	1 cut(s)	1198
BsrDI	GCAATG	1 cut(s)	1158
BsrFI	RCCGGY	1 cut(s)	681
BsrI	ACTGG	3 cut(s)	362, 994, 1251
BssAI	RCCGGY	1 cut(s)	681
BssECI	CCNNGG	4 cut(s)	61, 385, 469, 1263
BssMI	GATC	8 cut(s)	3, 17, 112, 186, 630, 979, 1114, 1187
BssNI	GRCGYC	1 cut(s)	1023
BssSI	CACGAG	1 cut(s)	778
BssT1I	CCWWGG	2 cut(s)	469, 1263
Bst2BI	CACGAG	1 cut(s)	778
Bst2UI	CCWGG	2 cut(s)	214, 387
Bst4CI	ACNGT	6 cut(s)	226, 435, 478, 619, 712, 745
Bst6I	CTCTTC	4 cut(s)	521, 639, 1036, 1279
BstACI	GRCGYC	1 cut(s)	1023
BstAFI	CTTAAG	1 cut(s)	1183
BstAPI	GCANNNNNTGC	1 cut(s)	1169
BstC8I	GCNNGC	2 cut(s)	624, 1170
BstDEI	CTNAG	2 cut(s)	457, 883
BstEII	GGTNACC	1 cut(s)	208
BstF5I	GGATG	4 cut(s)	152, 395, 792, 946
BstKTI	GATC	8 cut(s)	6, 20, 115, 189, 633, 982, 1117, 1190
BstMAI	GTCTC	3 cut(s)	62, 1198, 1237
BstMBI	GATC	8 cut(s)	3, 17, 112, 186, 630, 979, 1114, 1187
BstMWI	GCNNNNNNNGC	3 cut(s)	546, 1133, 1169
BstNI	CCWGG	2 cut(s)	214, 387
BstNSI	RCATGY	3 cut(s)	156, 493, 852
BstPI	GGTNACC	1 cut(s)	208
BstSCI	CCNGG	2 cut(s)	212, 385
BstSFI	CTRYAG	4 cut(s)	615, 639, 650, 1027
BstSLI	GKGCMC	1 cut(s)	264
BstV1I	GCAGC	5 cut(s)	309, 636, 671, 750, 899
BstX2I	RGATCY	3 cut(s)	17, 630, 1114
BstYI	RGATCY	3 cut(s)	17, 630, 1114
BsuI	GTATCC	1 cut(s)	823
BtgZI	GCGATG	1 cut(s)	34
BtsCI	GGATG	4 cut(s)	152, 395, 792, 946
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	3 cut(s)	230, 351, 624
Cac8I	GCNNGC	2 cut(s)	624, 1170
Cfr10I	RCCGGY	1 cut(s)	681
Csp6I	GTAC	5 cut(s)	269, 932, 963, 973, 988
CviQI	GTAC	5 cut(s)	269, 932, 963, 973, 988
DdeI	CTNAG	2 cut(s)	457, 883
DpnI	GATC	8 cut(s)	5, 19, 114, 188, 632, 981, 1116, 1189
DpnII	GATC	8 cut(s)	3, 17, 112, 186, 630, 979, 1114, 1187
DraI	TTTAAA	1 cut(s)	672
DraIII	CACNNNGTG	1 cut(s)	780
Eam1104I	CTCTTC	4 cut(s)	521, 639, 1036, 1279
EarI	CTCTTC	4 cut(s)	521, 639, 1036, 1279
Eco130I	CCWWGG	2 cut(s)	469, 1263
Eco31I	GGTCTC	1 cut(s)	1198
Eco32I	GATATC	1 cut(s)	916
Eco57I	CTGAAG	2 cut(s)	90, 545
Eco91I	GGTNACC	1 cut(s)	208
EcoO65I	GGTNACC	1 cut(s)	208
EcoRII	CCWGG	2 cut(s)	212, 385
EcoRV	GATATC	1 cut(s)	916
EcoT14I	CCWWGG	2 cut(s)	469, 1263
EcoT22I	ATGCAT	1 cut(s)	491
ErhI	CCWWGG	2 cut(s)	469, 1263
Esp3I	CGTCTC	1 cut(s)	62
FaqI	GGGAC	3 cut(s)	382, 487, 785
FauNDI	CATATG	1 cut(s)	419
FbaI	TGATCA	2 cut(s)	3, 112
FblI	GTMKAC	1 cut(s)	838
Fnu4HI	GCNGC	5 cut(s)	298, 650, 660, 739, 888
FokI	GGATG	4 cut(s)	159, 402, 779, 953
Fsp4HI	GCNGC	5 cut(s)	298, 650, 660, 739, 888
FspBI	CTAG	2 cut(s)	159, 272
GluI	GCNGC	5 cut(s)	298, 650, 660, 739, 888
GsaI	CCCAGC	1 cut(s)	25
GsuI	CTGGAG	2 cut(s)	882, 1149
HapII	CCGG	2 cut(s)	120, 682
Hin1I	GRCGYC	1 cut(s)	1023
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	3 cut(s)	398, 1093, 1268
HpaII	CCGG	2 cut(s)	120, 682
HphI	GGTGA	3 cut(s)	196, 220, 798
Hpy166II	GTNNAC	5 cut(s)	262, 431, 715, 839, 1008
Hpy188I	TCNGA	1 cut(s)	1107
Hpy188III	TCNNGA	3 cut(s)	523, 911, 983
Hpy8I	GTNNAC	5 cut(s)	262, 431, 715, 839, 1008
Hpy99I	CGWCG	2 cut(s)	38, 1025
HpyAV	CCTTC	1 cut(s)	1081
HpyCH4III	ACNGT	6 cut(s)	226, 435, 478, 619, 712, 745
HpyCH4IV	ACGT	2 cut(s)	930, 1023
HpyF10VI	GCNNNNNNNGC	3 cut(s)	546, 1133, 1169
HpyF3I	CTNAG	2 cut(s)	457, 883
HpySE526I	ACGT	2 cut(s)	930, 1023
Hsp92I	GRCGYC	1 cut(s)	1023
Ksp22I	TGATCA	2 cut(s)	3, 112
Kzo9I	GATC	8 cut(s)	3, 17, 112, 186, 630, 979, 1114, 1187
LguI	GCTCTTC	1 cut(s)	639
LmnI	GCTCC	5 cut(s)	122, 294, 863, 902, 1138
Lsp1109I	GCAGC	5 cut(s)	309, 636, 671, 750, 899
LweI	GCATC	7 cut(s)	57, 265, 527, 899, 1056, 1144, 1169
MaeI	CTAG	2 cut(s)	159, 272
MaeII	ACGT	2 cut(s)	930, 1023
MaeIII	GTNAC	7 cut(s)	92, 208, 226, 503, 510, 585, 726
MalI	GATC	8 cut(s)	5, 19, 114, 188, 632, 981, 1116, 1189
MboI	GATC	8 cut(s)	3, 17, 112, 186, 630, 979, 1114, 1187
MboII	GAAGA	8 cut(s)	538, 543, 546, 553, 656, 896, 1053, 1296
MflI	RGATCY	3 cut(s)	17, 630, 1114
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	6 cut(s)	345, 518, 543, 596, 667, 843
Mph1103I	ATGCAT	1 cut(s)	491
MseI	TTAA	3 cut(s)	671, 753, 1184
MslI	CAYNNNNRTG	1 cut(s)	617
MspCI	CTTAAG	1 cut(s)	1183
MspI	CCGG	2 cut(s)	120, 682
MspR9I	CCNGG	2 cut(s)	214, 387
MvaI	CCWGG	2 cut(s)	214, 387
MwoI	GCNNNNNNNGC	3 cut(s)	546, 1133, 1169
NdeI	CATATG	1 cut(s)	419
NdeII	GATC	8 cut(s)	3, 17, 112, 186, 630, 979, 1114, 1187
NlaIV	GGNNCC	3 cut(s)	330, 1116, 1140
NmuCI	GTSAC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	491
NspI	RCATGY	3 cut(s)	156, 493, 852
OliI	CACNNNNGTG	1 cut(s)	617
PciSI	GCTCTTC	1 cut(s)	639
PfeI	GAWTC	3 cut(s)	398, 1093, 1268
PkrI	GCNGC	5 cut(s)	299, 651, 661, 740, 889
Psp6I	CCWGG	2 cut(s)	212, 385
PspEI	GGTNACC	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	21
PspGI	CCWGG	2 cut(s)	212, 385
PspN4I	GGNNCC	3 cut(s)	330, 1116, 1140
PstI	CTGCAG	2 cut(s)	643, 654
PsuI	RGATCY	3 cut(s)	17, 630, 1114
RsaI	GTAC	5 cut(s)	270, 933, 964, 974, 989
RsaNI	GTAC	5 cut(s)	269, 932, 963, 973, 988
RseI	CAYNNNNRTG	1 cut(s)	617
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	3 cut(s)	671, 753, 1184
SatI	GCNGC	5 cut(s)	298, 650, 660, 739, 888
Sau3AI	GATC	8 cut(s)	3, 17, 112, 186, 630, 979, 1114, 1187
ScaI	AGTACT	1 cut(s)	989
ScrFI	CCNGG	2 cut(s)	214, 387
SduI	GDGCHC	1 cut(s)	264
SfaNI	GCATC	7 cut(s)	57, 265, 527, 899, 1056, 1144, 1169
SfcI	CTRYAG	4 cut(s)	615, 639, 650, 1027
SmiMI	CAYNNNNRTG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	1183
SmoI	CTYRAG	1 cut(s)	1183
Sse9I	AATT	6 cut(s)	345, 518, 543, 596, 667, 843
SsiI	CCGC	2 cut(s)	749, 1136
SspMI	CTAG	2 cut(s)	159, 272
StyD4I	CCNGG	2 cut(s)	212, 385
StyI	CCWWGG	2 cut(s)	469, 1263
TaaI	ACNGT	6 cut(s)	226, 435, 478, 619, 712, 745
TaiI	ACGT	2 cut(s)	933, 1026
TaqI	TCGA	1 cut(s)	1120
TasI	AATT	6 cut(s)	345, 518, 543, 596, 667, 843
TatI	WGTACW	1 cut(s)	987
TfiI	GAWTC	3 cut(s)	398, 1093, 1268
Tru1I	TTAA	3 cut(s)	671, 753, 1184
Tru9I	TTAA	3 cut(s)	671, 753, 1184
TscAI	CASTG	3 cut(s)	237, 358, 624
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	5 cut(s)	297, 649, 659, 738, 887
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	5 cut(s)	279, 357, 896, 1091, 1282
TspRI	CASTG	3 cut(s)	237, 358, 624
Vha464I	CTTAAG	1 cut(s)	1183
VneI	GTGCAC	1 cut(s)	260
XapI	RAATTY	3 cut(s)	345, 543, 596
XceI	RCATGY	3 cut(s)	156, 493, 852
XcmI	CCANNNNNNNNNTGG	2 cut(s)	934, 1243
XmiI	GTMKAC	1 cut(s)	838
XspI	CTAG	2 cut(s)	159, 272
ZraI	GACGTC	1 cut(s)	1024
ZrmI	AGTACT	1 cut(s)	989
Zsp2I	ATGCAT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.