Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

266424 .. 271139

Gene Structure 4716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G002000.1_v2.0.a1.CDS.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGTGGATAAGTTTCCCATTCTCCAAAAGCGTCGGAATGGTAAGGCTCCCAATCCTCAGGGTGATAAGGTTCCCAATCTACAGAATCACCAACCTCCTGGGTGGGGTGATGGGTGGGCTTCGACAGAAGGCCAAGCTGAGCTCGATATCCAAAAGATTGATAGGGATCTGAGGAATGAGAGGGACACATCAATCAGCTTGAACCAAGAGAAAGAGAGGCTGACAACGGAGCAGGCCAAGGACCTTGAACCCATGCTTCGCTTTTTGGAGTCTTGGGAGAAATTGCTACCCTTTTCTGTCCTTCATGCCATACTAGATACATTAGTCTTTCCCAAATTAAAGGACGCAGTTGTCTTGTGGGAACCTCACCCGGACACTGTTCCCATCCATGTGTGGGTGCTTCAATGGCTACCATTCTTGGGATACAAGTTGGAGGAATTGTATCACACAATACGTTTCAAGTTCAATAATGAGCTTCTTACAAATGAAATTATCCAATATCAGCTTAATTGTGGTCTTGACATGATGAATCTGCCTGTTGAGGGTATGGAGGTGAAAGCAGCAACAGCACAAGCAAACTTGAGTGGCACTGCTCACATTGATGGGATTGATAATGAGATGAGCTTGAAAGATGTTATTGAAGCCTATGGGCAACAACATGGTTTGCTATTTAGGCCTAAACTTGGGCAGATGCATAATGGTCACCAAATATATAGCTTTGGTAATGTAAGCATAATAGTCGACTCTCTAAATCAAAAGGTTTATGTCCAAACAAAGGAAATCTGGTCTCTTGTATCCCTTGAAAGGTTGCTTGACATGCAAAATAGTTCTCTTACAAGAAGACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000375 GO:0000377 GO:0000390 GO:0000398 GO:0000781 GO:0000784 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005694 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022411 GO:0030154 GO:0030198 GO:0031012 GO:0031333 GO:0031974 GO:0031981 GO:0032091 GO:0032502 GO:0032984 GO:0032988 GO:0032991 GO:0034641 GO:0042752 GO:0043021 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043393 GO:0043933 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0046483 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051098 GO:0051100 GO:0051128 GO:0051129 GO:0065007 GO:0065009 GO:0070013 GO:0070990 GO:0071008 GO:0071013 GO:0071014 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0098687 GO:1901360 GO:1902494 GO:1990446 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch GCFC TIP_N

Protein Analysis

283

Amino Acids

32.47

Weight (kDa)

5.74

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AccI	GTMKAC	1 cut(s)	741
AclWI	GGATC	1 cut(s)	174
AfiI	CCNNNNNNNGG	7 cut(s)	104, 394, 419, 542, 683, 775, 804
AgsI	TTSAA	8 cut(s)	202, 248, 404, 460, 466, 628, 641, 803
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	7 cut(s)	137, 142, 198, 475, 505, 624, 717
AluI	AGCT	7 cut(s)	137, 142, 198, 475, 505, 624, 717
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	792
AlwI	GGATC	1 cut(s)	174
AoxI	GGCC	3 cut(s)	130, 234, 674
ApeKI	GCWGC	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	241
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	6 cut(s)	74, 80, 119, 359, 565, 695
AvaII	GGWCC	1 cut(s)	241
AxyI	CCTNAGG	1 cut(s)	57
BaeI	ACNNNNGTAYC	2 cut(s)	309, 342
BanII	GRGCYC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	572
BccI	CCATC	3 cut(s)	104, 392, 596
BcgI	CGANNNNNNTGC	2 cut(s)	721, 755
BciT130I	CCWGG	1 cut(s)	99
BciVI	GTATCC	2 cut(s)	416, 805
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	792
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	80
BfuI	GTATCC	2 cut(s)	416, 805
BisI	GCNGC	1 cut(s)	561
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	562
Bme1390I	CCNGG	2 cut(s)	99, 371
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	3 cut(s)	48, 72, 363
BmrFI	CCNGG	2 cut(s)	99, 371
BmsI	GCATC	1 cut(s)	681
Bpu1102I	GCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	601
BpuMI	CCSGG	1 cut(s)	371
BsaBI	GATNNNNATC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	792
BsaJI	CCNNGG	2 cut(s)	98, 237
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	7 cut(s)	104, 394, 419, 542, 683, 775, 804
Bse21I	CCTNAGG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	2 cut(s)	98, 237
BseGI	GGATG	1 cut(s)	384
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	7 cut(s)	104, 394, 419, 542, 683, 775, 804
BseMII	CTCAG	3 cut(s)	71, 129, 161
BseXI	GCAGC	1 cut(s)	572
BshFI	GGCC	3 cut(s)	132, 236, 676
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	371
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	7 cut(s)	104, 394, 419, 542, 683, 775, 804
BsmAI	GTCTC	1 cut(s)	792
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	3 cut(s)	132, 236, 676
Bso31I	GGTCTC	1 cut(s)	792
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	166
Bsp1720I	GCTNAGC	1 cut(s)	138
BspANI	GGCC	3 cut(s)	132, 236, 676
BspCNI	CTCAG	3 cut(s)	70, 130, 162
BspLI	GGNNCC	3 cut(s)	48, 72, 363
BspPI	GGATC	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	792
BssECI	CCNNGG	2 cut(s)	98, 237
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	3 cut(s)	57, 138, 170
BstEII	GGTNACC	1 cut(s)	701
BstF5I	GGATG	1 cut(s)	384
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	792
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	4 cut(s)	406, 566, 673, 817
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	1 cut(s)	820
BstPI	GGTNACC	1 cut(s)	701
BstSCI	CCNGG	2 cut(s)	97, 369
BstSFI	CTRYAG	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	572
BstX2I	RGATCY	1 cut(s)	166
BstXI	CCANNNNNNTGG	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	166
Bsu36I	CCTNAGG	1 cut(s)	57
BsuI	GTATCC	2 cut(s)	416, 805
BsuRI	GGCC	3 cut(s)	132, 236, 676
BtsCI	GGATG	1 cut(s)	384
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	2 cut(s)	375, 588
Cac8I	GCNNGC	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	241
CseI	GACGC	2 cut(s)	20, 353
CviAII	CATG	6 cut(s)	253, 305, 389, 523, 659, 817
DdeI	CTNAG	3 cut(s)	57, 138, 170
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	237
Eco147I	AGGCCT	1 cut(s)	676
Eco24I	GRGCYC	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	792
Eco32I	GATATC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	142
Eco81I	CCTNAGG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	701
EcoICRI	GAGCTC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	237
EcoT22I	ATGCAT	1 cut(s)	696
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	6 cut(s)	256, 308, 392, 526, 662, 820
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	6 cut(s)	252, 304, 388, 522, 658, 816
FblI	GTMKAC	1 cut(s)	741
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	561
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	1 cut(s)	561
HaeIII	GGCC	3 cut(s)	132, 236, 676
HapII	CCGG	1 cut(s)	371
HgaI	GACGC	2 cut(s)	20, 353
Hin1II	CATG	6 cut(s)	256, 308, 392, 526, 662, 820
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HinfI	GANTC	4 cut(s)	85, 269, 529, 743
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	6 cut(s)	74, 80, 119, 359, 565, 695
Hpy166II	GTNNAC	1 cut(s)	742
Hpy188I	TCNGA	2 cut(s)	36, 171
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	1 cut(s)	742
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	2 cut(s)	122, 311
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	2 cut(s)	694, 820
HpyF10VI	GCNNNNNNNGC	4 cut(s)	406, 566, 673, 817
HpyF3I	CTNAG	3 cut(s)	57, 138, 170
HpySE526I	ACGT	1 cut(s)	454
Hsp92II	CATG	6 cut(s)	256, 308, 392, 526, 662, 820
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	2 cut(s)	52, 229
LpnPI	CCDG	7 cut(s)	44, 84, 111, 218, 384, 549, 769
Lsp1109I	GCAGC	1 cut(s)	572
LweI	GCATC	1 cut(s)	681
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	1 cut(s)	701
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	5 cut(s)	281, 335, 437, 489, 508
MlyI	GAGTC	2 cut(s)	278, 737
MmeI	TCCRAC	2 cut(s)	14, 411
MnlI	CCTC	9 cut(s)	66, 105, 165, 174, 210, 375, 427, 535, 544
Mph1103I	ATGCAT	1 cut(s)	696
MseI	TTAA	2 cut(s)	338, 507
MslI	CAYNNNNRTG	2 cut(s)	389, 600
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	99, 371
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	4 cut(s)	406, 566, 673, 817
NciI	CCSGG	1 cut(s)	371
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	6 cut(s)	256, 308, 392, 526, 662, 820
NlaIV	GGNNCC	3 cut(s)	48, 72, 363
NmuCI	GTSAC	1 cut(s)	701
NsiI	ATGCAT	1 cut(s)	696
NspI	RCATGY	1 cut(s)	820
PceI	AGGCCT	1 cut(s)	676
PfeI	GAWTC	2 cut(s)	85, 529
PkrI	GCNGC	1 cut(s)	562
PleI	GAGTC	2 cut(s)	277, 737
PpsI	GAGTC	2 cut(s)	277, 737
PpuMI	RGGWCCY	1 cut(s)	241
Psp124BI	GAGCTC	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	97
PspEI	GGTNACC	1 cut(s)	701
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	3 cut(s)	48, 72, 363
PspPI	GGNCC	1 cut(s)	241
PspPPI	RGGWCCY	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	166
RseI	CAYNNNNRTG	2 cut(s)	389, 600
SacI	GAGCTC	1 cut(s)	144
SalI	GTCGAC	1 cut(s)	740
SaqAI	TTAA	2 cut(s)	338, 507
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	2 cut(s)	278, 737
ScrFI	CCNGG	2 cut(s)	99, 371
SduI	GDGCHC	1 cut(s)	144
SfaNI	GCATC	1 cut(s)	681
SfcI	CTRYAG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	241
SmiMI	CAYNNNNRTG	2 cut(s)	389, 600
SmlI	CTYRAG	1 cut(s)	580
SmoI	CTYRAG	1 cut(s)	580
Sse9I	AATT	5 cut(s)	281, 335, 437, 489, 508
SseBI	AGGCCT	1 cut(s)	676
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	144
StuI	AGGCCT	1 cut(s)	676
StyD4I	CCNGG	2 cut(s)	97, 369
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	379
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	3 cut(s)	122, 144, 741
TasI	AATT	5 cut(s)	281, 335, 437, 489, 508
TfiI	GAWTC	2 cut(s)	85, 529
Tru1I	TTAA	2 cut(s)	338, 507
Tru9I	TTAA	2 cut(s)	338, 507
TscAI	CASTG	2 cut(s)	382, 595
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	3 cut(s)	293, 501, 542
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	2 cut(s)	382, 595
VpaK11BI	GGWCC	1 cut(s)	241
XceI	RCATGY	1 cut(s)	820
XmiI	GTMKAC	1 cut(s)	741
XspI	CTAG	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.