Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

319600 .. 321859

Gene Structure 2260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G002500.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGACTGTCTTACTTAAGCCCTGGAAAAGTAAGTCGGATACTGTTCTTTTCTTCAAGGTTCTTCAACTTTTTAAGCTAGAATATGATTTATTTATTTTTGTCACAAGGGGTAAAGAAAAGAAGCTGGATCTCAGGCAAATTGCGTTGGAAGCTCGGAATGCAGAATACAACCCCAAGCGTTTTGCCGCTGCCATTGTTAGAATAAGGGAACCAAAAACTACAGCGTTGATTTTTGCCTCTGGGAAGATGATGTTTAATCTCTCTGGTACTCAGGTATGCACAGGCACGAAAAGTGAACAGCAATCAGAAGTGGCAGCAAGGAAGGACTTCAAGATTCAAAATATTGTTGGCTCCTGTGATGTTAAATTCCCTATAAGACTTGAGTGTCTTGCATACTCTCCCATGGGGCCTTTTCAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

141

Amino Acids

15.97

Weight (kDa)

9.74

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	384
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	365
AfaI	GTAC	1 cut(s)	268
AflII	CTTAAG	1 cut(s)	14
AgsI	TTSAA	5 cut(s)	55, 65, 331, 338, 416
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	3 cut(s)	76, 124, 152
AluI	AGCT	3 cut(s)	76, 124, 152
AlwI	GGATC	1 cut(s)	135
AoxI	GGCC	1 cut(s)	407
ApeKI	GCWGC	2 cut(s)	188, 314
ApoI	RAATTY	1 cut(s)	365
Asp700I	GAANNNNTTC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	407
BaeI	ACNNNNGTAYC	2 cut(s)	258, 291
BbvI	GCAGC	2 cut(s)	175, 326
BciT130I	CCWGG	1 cut(s)	22
BciVI	GTATCC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	219
BfrI	CTTAAG	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	31
BisI	GCNGC	3 cut(s)	186, 189, 315
BlsI	GCNGC	3 cut(s)	187, 190, 316
Bme1390I	CCNGG	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	3 cut(s)	210, 352, 408
BmrFI	CCNGG	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	20, 402
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	20, 402
BseMII	CTCAG	2 cut(s)	145, 284
BseXI	GCAGC	2 cut(s)	175, 326
BshFI	GGCC	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	409
Bsp143I	GATC	1 cut(s)	127
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	409
BspCNI	CTCAG	2 cut(s)	144, 283
BspLI	GGNNCC	3 cut(s)	210, 352, 408
BspPI	GGATC	1 cut(s)	135
BspTI	CTTAAG	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	20, 402
BssMI	GATC	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	2 cut(s)	7, 43
BstAFI	CTTAAG	1 cut(s)	14
BstDEI	CTNAG	2 cut(s)	131, 270
BstDSI	CCRYGG	1 cut(s)	402
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 158
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	175, 326
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	409
BtgI	CCRYGG	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	1 cut(s)	403
CviJI	RGCY	6 cut(s)	19, 76, 124, 152, 351, 409
CviKI_1	RGCY	6 cut(s)	19, 76, 124, 152, 351, 409
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	2 cut(s)	131, 270
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
DrdI	GACNNNNNNGTC	1 cut(s)	384
DseDI	GACNNNNNNGTC	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	1 cut(s)	406
FaiI	YATR	5 cut(s)	84, 277, 374, 394, 404
FatI	CATG	1 cut(s)	402
Fnu4HI	GCNGC	3 cut(s)	186, 189, 315
Fsp4HI	GCNGC	3 cut(s)	186, 189, 315
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	3 cut(s)	186, 189, 315
HaeIII	GGCC	1 cut(s)	409
Hin1II	CATG	1 cut(s)	406
HinfI	GANTC	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	3 cut(s)	37, 156, 307
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	2 cut(s)	7, 43
HpyCH4V	TGCA	3 cut(s)	161, 279, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 158
HpyF3I	CTNAG	2 cut(s)	131, 270
Hsp92II	CATG	1 cut(s)	406
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	356
LpnPI	CCDG	9 cut(s)	7, 34, 110, 118, 225, 249, 257, 267, 367
Lsp1109I	GCAGC	2 cut(s)	175, 326
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	3 cut(s)	43, 53, 256
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	2 cut(s)	138, 365
MmeI	TCCRAC	2 cut(s)	15, 126
MnlI	CCTC	1 cut(s)	247
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	4 cut(s)	15, 72, 255, 363
MspA1I	CMGCKG	1 cut(s)	188
MspCI	CTTAAG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	22
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	2 cut(s)	149, 158
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	406
NlaIV	GGNNCC	3 cut(s)	210, 352, 408
NmuCI	GTSAC	1 cut(s)	100
PctI	GAATGC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	3 cut(s)	187, 190, 316
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	3 cut(s)	210, 352, 408
PspPI	GGNCC	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
SaqAI	TTAA	4 cut(s)	15, 72, 255, 363
SatI	GCNGC	3 cut(s)	186, 189, 315
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	22
SetI	ASST	5 cut(s)	60, 78, 126, 154, 276
SfcI	CTRYAG	1 cut(s)	219
SmlI	CTYRAG	2 cut(s)	14, 380
SmoI	CTYRAG	2 cut(s)	14, 380
Sse9I	AATT	2 cut(s)	138, 365
SsiI	CCGC	1 cut(s)	186
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	7, 43
TasI	AATT	2 cut(s)	138, 365
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	4 cut(s)	15, 72, 255, 363
Tru9I	TTAA	4 cut(s)	15, 72, 255, 363
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	188, 314
Tsp45I	GTSAC	1 cut(s)	100
Vha464I	CTTAAG	1 cut(s)	14
XapI	RAATTY	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.