Prupe.7G003100_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
356205 .. 356882
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G003100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 678 bp
ATGCCTCCTCCTCCTCCTCGCGGTGGCCTCATACCATTTTACGCCAATCCACTAGAAGCTTGCTCTTCATCTAAGAACCTCCAAACCCTCAAACACCTCCACGCTAAATCTATAAGGCTCTGCATTTCCCGCCACGACTTCATACGAACCAAGCTCATTTTCTCCTATGCCTCCTGTGCTCAACTGAGCCAGGCCAACCTCCTCTTCTCCTGTAATCGCCAACTCACCTTCCTCTTCAACATCCTCATTAGAGCCCATTCGTCTCAGGGCTTCTTCTCTCAATCTTTGTCCATTTTTATCCGCATGCTTGCTGCCATTAAAGCCTTTGACCGCCATACCTTGCCTGTGGTTCCCAAATCTTGTGCTGGATTATTGGAATTGAGGCTTGGAAAGCAAGTACATAGAACCATTTTGGTTAATGGGTTTGCCTTAGATTTGGCCAGCTTGAATGCGTTGATCAGCATGTGTGCTAAGTGTGGTGATTTGGCTGGTACGCGTAAAGTGTTTGACAGAAGGCTCATAAGAAATGAGATTTCTTGGTTGGCAATTTTGGCCGGGTATGGAATGCATGGAGTGTTTGGTGAGGTATTTGAATTGTTTGATAGGATGGAGGCAGGAGAGAGGCCAGATGTGGTGACATTCACTACGGTTTTGCAGCGTGTAGTCATGGCGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

226

Amino Acids

25.1

Weight (kDa)

9.71

Isoelectric Point (pI)

50.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 21, 496
AciI CCGC 5 cut(s) 21, 130, 301, 331, 671
AcoI YGGCCR 2 cut(s) 438, 552
AfaI GTAC 2 cut(s) 399, 493
AfiI CCNNNNNNNGG 2 cut(s) 20, 23
AflIII ACRYGT 1 cut(s) 494
AgsI TTSAA 3 cut(s) 238, 448, 593
AjnI CCWGG 1 cut(s) 189
AjuI GAANNNNNNNTTGG 6 cut(s) 143, 175, 188, 220, 369, 401
AluBI AGCT 3 cut(s) 59, 154, 444
AluI AGCT 3 cut(s) 59, 154, 444
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 1 cut(s) 267
AoxI GGCC 5 cut(s) 25, 192, 438, 552, 623
ApeKI GCWGC 2 cut(s) 311, 655
AsuC2I CCSGG 1 cut(s) 556
AsuHPI GGTGA 4 cut(s) 217, 491, 593, 646
BalI TGGCCA 1 cut(s) 440
BanII GRGCYC 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 2 cut(s) 298, 667
BccI CCATC 1 cut(s) 601
BciT130I CCWGG 1 cut(s) 191
BclI TGATCA 1 cut(s) 456
BcnI CCSGG 1 cut(s) 556
BcoDI GTCTC 1 cut(s) 267
BfaI CTAG 1 cut(s) 53
BisI GCNGC 2 cut(s) 312, 656
BlsI GCNGC 2 cut(s) 313, 657
Bme1390I CCNGG 2 cut(s) 191, 556
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 2 cut(s) 191, 556
BpuMI CCSGG 1 cut(s) 556
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 23
BseBI CCWGG 1 cut(s) 191
BseGI GGATG 2 cut(s) 240, 612
BseLI CCNNNNNNNGG 2 cut(s) 20, 23
BseMII CTCAG 2 cut(s) 176, 278
BseRI GAGGAG 2 cut(s) 6, 191
BseXI GCAGC 2 cut(s) 298, 667
Bsh1236I CGCG 2 cut(s) 21, 496
BshFI GGCC 5 cut(s) 27, 194, 440, 554, 625
BsiHKAI GWGCWC 1 cut(s) 181
BsiSI CCGG 1 cut(s) 555
BslI CCNNNNNNNGG 2 cut(s) 20, 23
BsmAI GTCTC 1 cut(s) 267
BsmBI CGTCTC 1 cut(s) 267
BsmI GAATGC 2 cut(s) 454, 570
BsnI GGCC 5 cut(s) 27, 194, 440, 554, 625
Bsp1286I GDGCHC 2 cut(s) 181, 256
Bsp143I GATC 1 cut(s) 456
BspACI CCGC 5 cut(s) 21, 130, 301, 331, 671
BspANI GGCC 5 cut(s) 27, 194, 440, 554, 625
BspCNI CTCAG 2 cut(s) 177, 277
BspFNI CGCG 2 cut(s) 21, 496
BspLI GGNNCC 1 cut(s) 351
BspQI GCTCTTC 1 cut(s) 70
BssMI GATC 1 cut(s) 456
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 649
Bst6I CTCTTC 3 cut(s) 70, 209, 239
BstC8I GCNNGC 4 cut(s) 61, 305, 309, 442
BstDEI CTNAG 5 cut(s) 72, 185, 264, 430, 471
BstF5I GGATG 2 cut(s) 240, 612
BstFNI CGCG 2 cut(s) 21, 496
BstKTI GATC 1 cut(s) 459
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 1 cut(s) 456
BstMWI GCNNNNNNNGC 5 cut(s) 129, 176, 320, 391, 551
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 2 cut(s) 307, 466
BstSCI CCNGG 2 cut(s) 189, 554
BstUI CGCG 2 cut(s) 21, 496
BstV1I GCAGC 2 cut(s) 298, 667
BsuRI GGCC 5 cut(s) 27, 194, 440, 554, 625
BtsCI GGATG 2 cut(s) 240, 612
Cac8I GCNNGC 4 cut(s) 61, 305, 309, 442
Csp6I GTAC 2 cut(s) 398, 492
CviAII CATG 4 cut(s) 304, 463, 569, 667
CviQI GTAC 2 cut(s) 398, 492
DdeI CTNAG 5 cut(s) 72, 185, 264, 430, 471
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
EaeI YGGCCR 2 cut(s) 438, 552
Eam1104I CTCTTC 3 cut(s) 70, 209, 239
EarI CTCTTC 3 cut(s) 70, 209, 239
Eco24I GRGCYC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 189
EcoT22I ATGCAT 1 cut(s) 570
EcoT38I GRGCYC 1 cut(s) 256
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 4 cut(s) 307, 466, 572, 670
FatI CATG 4 cut(s) 303, 462, 568, 666
FauI CCCGC 1 cut(s) 137
FbaI TGATCA 1 cut(s) 456
Fnu4HI GCNGC 2 cut(s) 312, 656
FokI GGATG 2 cut(s) 227, 619
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 2 cut(s) 312, 656
FspBI CTAG 1 cut(s) 53
GluI GCNGC 2 cut(s) 312, 656
HaeIII GGCC 5 cut(s) 27, 194, 440, 554, 625
HapII CCGG 1 cut(s) 555
Hin1II CATG 4 cut(s) 307, 466, 572, 670
HindIII AAGCTT 1 cut(s) 57
HpaII CCGG 1 cut(s) 555
HphI GGTGA 4 cut(s) 217, 491, 593, 646
HpyAV CCTTC 2 cut(s) 238, 507
HpyCH4III ACNGT 1 cut(s) 649
HpyCH4V TGCA 3 cut(s) 123, 568, 655
HpyF10VI GCNNNNNNNGC 5 cut(s) 129, 176, 320, 391, 551
HpyF3I CTNAG 5 cut(s) 72, 185, 264, 430, 471
Hsp92II CATG 4 cut(s) 307, 466, 572, 670
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 1 cut(s) 456
LguI GCTCTTC 1 cut(s) 70
Lsp1109I GCAGC 2 cut(s) 298, 667
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 634
MalI GATC 1 cut(s) 458
MboI GATC 1 cut(s) 456
MboII GAAGA 4 cut(s) 57, 196, 226, 265
MhlI GDGCHC 2 cut(s) 181, 256
MlsI TGGCCA 1 cut(s) 440
MluCI AATT 3 cut(s) 377, 546, 593
MluI ACGCGT 1 cut(s) 494
MluNI TGGCCA 1 cut(s) 440
Mox20I TGGCCA 1 cut(s) 440
Mph1103I ATGCAT 1 cut(s) 570
MscI TGGCCA 1 cut(s) 440
MseI TTAA 3 cut(s) 318, 417, 676
Msp20I TGGCCA 1 cut(s) 440
MspI CCGG 1 cut(s) 555
MspR9I CCNGG 2 cut(s) 191, 556
Mva1269I GAATGC 2 cut(s) 454, 570
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 2 cut(s) 21, 496
MwoI GCNNNNNNNGC 5 cut(s) 129, 176, 320, 391, 551
NciI CCSGG 1 cut(s) 556
NdeII GATC 1 cut(s) 456
NlaIII CATG 4 cut(s) 307, 466, 572, 670
NlaIV GGNNCC 1 cut(s) 351
NmuCI GTSAC 1 cut(s) 634
NsiI ATGCAT 1 cut(s) 570
NspI RCATGY 2 cut(s) 307, 466
PaeI GCATGC 1 cut(s) 307
PciSI GCTCTTC 1 cut(s) 70
PctI GAATGC 2 cut(s) 454, 570
PkrI GCNGC 2 cut(s) 313, 657
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 351
RsaI GTAC 2 cut(s) 399, 493
RsaNI GTAC 2 cut(s) 398, 492
SapI GCTCTTC 1 cut(s) 70
SaqAI TTAA 3 cut(s) 318, 417, 676
SatI GCNGC 2 cut(s) 312, 656
Sau3AI GATC 1 cut(s) 456
ScrFI CCNGG 2 cut(s) 191, 556
SduI GDGCHC 2 cut(s) 181, 256
SetI ASST 9 cut(s) 61, 81, 99, 156, 201, 230, 341, 446, 588
SphI GCATGC 1 cut(s) 307
Sse9I AATT 3 cut(s) 377, 546, 593
SsiI CCGC 5 cut(s) 21, 130, 301, 331, 671
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 189, 554
TaaI ACNGT 1 cut(s) 649
TasI AATT 3 cut(s) 377, 546, 593
TatI WGTACW 1 cut(s) 397
Tru1I TTAA 3 cut(s) 318, 417, 676
Tru9I TTAA 3 cut(s) 318, 417, 676
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 2 cut(s) 311, 655
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 2 cut(s) 57, 130
XceI RCATGY 2 cut(s) 307, 466
XspI CTAG 1 cut(s) 53
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.