Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

358504 .. 359922

Gene Structure 1419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G003200.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTCACACCCAAACAACCACCACTTCCTCACCCACTTCCAAACCATCACAACAAACACTGTATATCCGGAAAAGACCCAAAAGCCCATAGACCTCACTGTTTCATGGACCTCCTCCATATCCCTCCCACCCTGCCGAAATGGTCAATTGGCTGAAGCTGTTGCGCATTTCATCCAAATGAGACGAGCCGGCGTCGAGCCAAACCACATCACATCAATTGCTGCCTGTGCTGATTTGGGAACGCTTGGATTAGGCTTGTGGATAAACCGGTTTCTTGTGAAGCAAGATTTTAGAGACAACATTAGGATAAAGGACCTCATGCAGAAGGAAGGGTTCAAGGCAGACGGGTTCAGCTTCACTGGAGCTTTTACCGCCTGCAGCCATGCTGCTTTAGTCAACGAGGGGCTCCATTACTTTGATAACACGAAGAGAATTCACAAAATAACCCCGATAATTGAGCATTATGGGTGCATAGTTGATCTGTATAGCCGTGCAGGGATGTTGGAAGATGCCTTAAATGTAATAAAAAACATGCCAATGAAGCCAAATGAAGTTGTGGTGGGTTCTTTGCTAGCTGCATGTAGAACCAATGGGAATATCAGTTTAGCTGAAAGATTAATGAAGTACCTCTATGAGTTGGATACTGGTGTTGATTCCAACTATGTACTCTTATCCAATATATGTGCAGCGGATGGTAGGTGGGATGGTGCAAGCAAGGTTAGGAAGAACATGAAAGCCCTCGGAATACAAAAGACGCCGGGCTTCTCTTTTGAGCTCAAATTATGCGGGTATGTTCCAGAAAACATTGTGAGGGAATCATACGAATTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

278

Amino Acids

30.99

Weight (kDa)

7.65

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	165
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	3 cut(s)	372, 689, 786
AcsI	RAATTY	2 cut(s)	432, 824
AcuI	CTGAAG	1 cut(s)	174
AcyI	GRCGYC	2 cut(s)	192, 755
AfaI	GTAC	2 cut(s)	626, 666
AgeI	ACCGGT	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	337
AluBI	AGCT	6 cut(s)	158, 354, 365, 575, 608, 775
AluI	AGCT	6 cut(s)	158, 354, 365, 575, 608, 775
Alw21I	GWGCWC	1 cut(s)	777
Alw26I	GTCTC	2 cut(s)	175, 288
Aor13HI	TCCGGA	1 cut(s)	67
ApeKI	GCWGC	5 cut(s)	221, 378, 386, 575, 686
ApoI	RAATTY	2 cut(s)	432, 824
AseI	ATTAAT	1 cut(s)	617
AsiGI	ACCGGT	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	2 cut(s)	108, 313
AsuC2I	CCSGG	1 cut(s)	759
AsuHPI	GGTGA	1 cut(s)	22
AsuNHI	GCTAGC	1 cut(s)	571
AvaII	GGWCC	2 cut(s)	108, 313
BaeI	ACNNNNGTAYC	2 cut(s)	633, 666
BanII	GRGCYC	2 cut(s)	408, 777
Bbv12I	GWGCWC	1 cut(s)	777
BbvI	GCAGC	5 cut(s)	208, 373, 390, 562, 698
BccI	CCATC	3 cut(s)	53, 686, 698
BceAI	ACGGC	1 cut(s)	474
BciVI	GTATCC	1 cut(s)	634
BcnI	CCSGG	1 cut(s)	759
BcoDI	GTCTC	2 cut(s)	175, 288
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	376
BfuI	GTATCC	1 cut(s)	634
BisI	GCNGC	5 cut(s)	222, 379, 387, 576, 687
BlsI	GCNGC	5 cut(s)	223, 380, 388, 577, 688
Bme1390I	CCNGG	1 cut(s)	759
Bme18I	GGWCC	2 cut(s)	108, 313
BmgT120I	GGNCC	2 cut(s)	108, 313
BmiI	GGNNCC	1 cut(s)	407
BmrFI	CCNGG	1 cut(s)	759
BmsI	GCATC	1 cut(s)	499
BmtI	GCTAGC	1 cut(s)	575
BpmI	CTGGAG	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	759
BsaHI	GRCGYC	2 cut(s)	192, 755
BsaJI	CCNNGG	1 cut(s)	739
BsaWI	WCCGGW	2 cut(s)	67, 267
Bse118I	RCCGGY	2 cut(s)	188, 267
Bse1I	ACTGG	2 cut(s)	364, 649
BseAI	TCCGGA	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	739
BseGI	GGATG	4 cut(s)	171, 504, 697, 709
BseNI	ACTGG	2 cut(s)	364, 649
BseRI	GAGGAG	1 cut(s)	103
BseXI	GCAGC	5 cut(s)	208, 373, 390, 562, 698
BsgI	GTGCAG	2 cut(s)	513, 705
BshTI	ACCGGT	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	777
BsiSI	CCGG	4 cut(s)	68, 189, 268, 758
BsmAI	GTCTC	2 cut(s)	175, 288
BsmBI	CGTCTC	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	408, 777
Bsp13I	TCCGGA	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	478
BspACI	CCGC	3 cut(s)	372, 689, 786
BspEI	TCCGGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	407
BspMAI	CTGCAG	1 cut(s)	380
BspOI	GCTAGC	1 cut(s)	575
BsrFI	RCCGGY	2 cut(s)	188, 267
BsrI	ACTGG	2 cut(s)	364, 649
BssAI	RCCGGY	2 cut(s)	188, 267
BssECI	CCNNGG	1 cut(s)	739
BssMI	GATC	1 cut(s)	478
BssNI	GRCGYC	2 cut(s)	192, 755
Bst4CI	ACNGT	2 cut(s)	61, 100
Bst6I	CTCTTC	1 cut(s)	422
BstACI	GRCGYC	2 cut(s)	192, 755
BstC8I	GCNNGC	4 cut(s)	190, 376, 573, 712
BstF5I	GGATG	4 cut(s)	171, 504, 697, 709
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	1 cut(s)	481
BstMAI	GTCTC	2 cut(s)	175, 288
BstMBI	GATC	1 cut(s)	478
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 371, 541
BstNSI	RCATGY	2 cut(s)	535, 582
BstSCI	CCNGG	1 cut(s)	757
BstSFI	CTRYAG	1 cut(s)	376
BstV1I	GCAGC	5 cut(s)	208, 373, 390, 562, 698
BsuI	GTATCC	1 cut(s)	634
BtsCI	GGATG	4 cut(s)	171, 504, 697, 709
BtsIMutI	CAGTG	3 cut(s)	57, 96, 357
Cac8I	GCNNGC	4 cut(s)	190, 376, 573, 712
CfoI	GCGC	1 cut(s)	166
Cfr10I	RCCGGY	2 cut(s)	188, 267
Cfr13I	GGNCC	2 cut(s)	108, 313
CseI	GACGC	2 cut(s)	181, 763
Csp6I	GTAC	2 cut(s)	625, 665
CspAI	ACCGGT	1 cut(s)	267
CviAII	CATG	6 cut(s)	105, 319, 383, 532, 579, 730
CviQI	GTAC	2 cut(s)	625, 665
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Ecl136II	GAGCTC	1 cut(s)	775
Eco24I	GRGCYC	2 cut(s)	408, 777
Eco47I	GGWCC	2 cut(s)	108, 313
Eco53kI	GAGCTC	1 cut(s)	775
Eco57I	CTGAAG	1 cut(s)	174
EcoICRI	GAGCTC	1 cut(s)	775
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRI	GAATTC	1 cut(s)	432
EcoT38I	GRGCYC	2 cut(s)	408, 777
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	6 cut(s)	108, 322, 386, 535, 582, 733
FatI	CATG	6 cut(s)	104, 318, 382, 531, 578, 729
FauI	CCCGC	1 cut(s)	779
Fnu4HI	GCNGC	5 cut(s)	222, 379, 387, 576, 687
FokI	GGATG	4 cut(s)	158, 511, 704, 716
FriOI	GRGCYC	2 cut(s)	408, 777
Fsp4HI	GCNGC	5 cut(s)	222, 379, 387, 576, 687
FspBI	CTAG	1 cut(s)	572
FspI	TGCGCA	1 cut(s)	165
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	5 cut(s)	222, 379, 387, 576, 687
GsuI	CTGGAG	1 cut(s)	381
HapII	CCGG	4 cut(s)	68, 189, 268, 758
HgaI	GACGC	2 cut(s)	181, 763
HhaI	GCGC	1 cut(s)	166
Hin1I	GRCGYC	2 cut(s)	192, 755
Hin1II	CATG	6 cut(s)	108, 322, 386, 535, 582, 733
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	2 cut(s)	653, 815
HpaII	CCGG	4 cut(s)	68, 189, 268, 758
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	1 cut(s)	743
Hpy188III	TCNNGA	2 cut(s)	68, 797
Hpy8I	GTNNAC	1 cut(s)	397
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	319, 323
HpyCH4III	ACNGT	2 cut(s)	61, 100
HpyCH4V	TGCA	7 cut(s)	322, 378, 471, 494, 578, 686, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 371, 541
Hsp92I	GRCGYC	2 cut(s)	192, 755
Hsp92II	CATG	6 cut(s)	108, 322, 386, 535, 582, 733
HspAI	GCGC	1 cut(s)	164
Kpn2I	TCCGGA	1 cut(s)	67
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	478
LmnI	GCTCC	2 cut(s)	362, 411
Lsp1109I	GCAGC	5 cut(s)	208, 373, 390, 562, 698
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	1 cut(s)	572
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	480
MboI	GATC	1 cut(s)	478
MboII	GAAGA	3 cut(s)	439, 518, 736
MfeI	CAATTG	2 cut(s)	146, 216
MhlI	GDGCHC	2 cut(s)	408, 777
MluCI	AATT	6 cut(s)	146, 216, 432, 453, 779, 824
MmeI	TCCRAC	3 cut(s)	483, 618, 681
MroI	TCCGGA	1 cut(s)	67
MroNI	GCCGGC	1 cut(s)	188
MseI	TTAA	2 cut(s)	515, 617
MslI	CAYNNNNRTG	2 cut(s)	176, 536
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	4 cut(s)	68, 189, 268, 758
MspR9I	CCNGG	1 cut(s)	759
MunI	CAATTG	2 cut(s)	146, 216
MwoI	GCNNNNNNNGC	3 cut(s)	227, 371, 541
NaeI	GCCGGC	1 cut(s)	190
NciI	CCSGG	1 cut(s)	759
NdeII	GATC	1 cut(s)	478
NgoMIV	GCCGGC	1 cut(s)	188
NheI	GCTAGC	1 cut(s)	571
NlaIII	CATG	6 cut(s)	108, 322, 386, 535, 582, 733
NlaIV	GGNNCC	1 cut(s)	407
NmuCI	GTSAC	1 cut(s)	3
NsbI	TGCGCA	1 cut(s)	165
NspI	RCATGY	2 cut(s)	535, 582
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	653, 815
PinAI	ACCGGT	1 cut(s)	267
PkrI	GCNGC	5 cut(s)	223, 380, 388, 577, 688
PpuMI	RGGWCCY	1 cut(s)	313
PshBI	ATTAAT	1 cut(s)	617
Psp124BI	GAGCTC	1 cut(s)	777
Psp5II	RGGWCCY	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	407
PspPI	GGNCC	2 cut(s)	108, 313
PspPPI	RGGWCCY	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	380
RsaI	GTAC	2 cut(s)	626, 666
RsaNI	GTAC	2 cut(s)	625, 665
RseI	CAYNNNNRTG	2 cut(s)	176, 536
SacI	GAGCTC	1 cut(s)	777
SaqAI	TTAA	2 cut(s)	515, 617
SatI	GCNGC	5 cut(s)	222, 379, 387, 576, 687
Sau3AI	GATC	1 cut(s)	478
Sau96I	GGNCC	2 cut(s)	108, 313
ScrFI	CCNGG	1 cut(s)	759
SduI	GDGCHC	2 cut(s)	408, 777
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	376
SinI	GGWCC	2 cut(s)	108, 313
SmiMI	CAYNNNNRTG	2 cut(s)	176, 536
Sse9I	AATT	6 cut(s)	146, 216, 432, 453, 779, 824
SsiI	CCGC	3 cut(s)	372, 689, 786
SspMI	CTAG	1 cut(s)	572
SstI	GAGCTC	1 cut(s)	777
StyD4I	CCNGG	1 cut(s)	757
TaaI	ACNGT	2 cut(s)	61, 100
TaqI	TCGA	1 cut(s)	195
TasI	AATT	6 cut(s)	146, 216, 432, 453, 779, 824
TatI	WGTACW	1 cut(s)	664
TfiI	GAWTC	2 cut(s)	653, 815
Tru1I	TTAA	2 cut(s)	515, 617
Tru9I	TTAA	2 cut(s)	515, 617
TscAI	CASTG	3 cut(s)	64, 103, 364
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	5 cut(s)	221, 378, 386, 575, 686
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	6 cut(s)	93, 160, 554, 564, 635, 746
TspRI	CASTG	3 cut(s)	64, 103, 364
VpaK11BI	GGWCC	2 cut(s)	108, 313
VspI	ATTAAT	1 cut(s)	617
XapI	RAATTY	2 cut(s)	432, 824
XceI	RCATGY	2 cut(s)	535, 582
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.