Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

870890 .. 875260

Gene Structure 4371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G006700.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGATAATAGAGTTGATGAAGCCGCTTCACTTGTCCACAAAATGGCAGCCTTTGGAGAAGGATGGTTTATGCAGATTAGGTCAGTGGAAGGAAGCGTCACGATTCTTCAAAGAGATGAACAGTAACGGTATCTCTCCAAACGTTCAAACCTTCAGTGCCCTTGTTGACTGTTTGTGTAAGGAGGGCAAGTTGAAGGAAGCTAATCAAGTAATTGATATTTTGACTGCTAGAGGTATGGAACCTAATACTGTTACTTACAATTCGCTCATGGAGGGTTATTGCTTGCAAGGAGATATGGATAAAGCAAAACGCATTTTTGATCTAATGCTTAAGAAGGGCTCTATTGTTGATGTTTTTAGTTATAGTATACTGATAAACGGATATTGCAATGAAAGAAGAATGAAGGAAGCAATGTTGTCGTTTGAGGAAATGACTCGTAAGGGAATGGTTCCAGATATTGTTACTTATACAACACTTATTGGCGGCTTTTGCAAAGAGGGAAGAATAGATGATGCACAAAACATGTTCTCAAAAATGAAAGTTGGTGGTCCACTTCCAAATATTCATACTTATAGTGTTTTACTGGATGGACTGTGTAGAAACCGCCAGATTGATATGGCTTTGAAATTGTTTGGAGAGTTGGAAGGGAGTAGCTTGGATTTTGGTATCGGTCTCTACAATATTCTTATCAATGGTTTATGCACGGCAAGAAGAATTGAATGTGCAAGGGATCTCTTTTGCAGTTTTCCTTCAAAAGGACTTCAACCAGATGTCAAGACCTATACAATACTGATAATTGCTCTTTCTACCAAGGGCCTATTTAGTGAAGCAGAAGCATTTCTTAGAGGAATGGAAGAGAAAGGCTGTTCCCCAGATACTGTTACCTACAACACAATCATCCAGGGATTTCTCCGTAATGATGAGCTATCAAGGGCACAAGAACTTATTCAAGAAATGATGACCAAGGGTTTCTGTGCAGATGATTCAACAGAAAAAATGATAACTGACTTAATTACTGAGGGCAAACTGGATCCTGCTTTTCATCCAGTGGAAAAAAAATCTGAGGGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

358

Amino Acids

40.11

Weight (kDa)

5.52

Isoelectric Point (pI)

33.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	42
AccI	GTMKAC	1 cut(s)	367
AciI	CCGC	3 cut(s)	23, 483, 604
AclI	AACGTT	1 cut(s)	141
AclWI	GGATC	3 cut(s)	738, 1025, 1038
AcsI	RAATTY	1 cut(s)	1068
AcuI	CTGAAG	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	42, 755
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	9 cut(s)	109, 146, 193, 625, 719, 753, 764, 950, 987
AjnI	CCWGG	1 cut(s)	900
AluBI	AGCT	3 cut(s)	200, 654, 925
AluI	AGCT	3 cut(s)	200, 654, 925
Alw26I	GTCTC	1 cut(s)	677
AlwI	GGATC	3 cut(s)	738, 1025, 1038
AlwNI	CAGNNNCTG	1 cut(s)	878
AoxI	GGCC	1 cut(s)	814
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	1068
Asp700I	GAANNNNTTC	2 cut(s)	837, 945
AspS9I	GGNCC	2 cut(s)	548, 814
AvaII	GGWCC	1 cut(s)	548
BaeGI	GKGCMC	2 cut(s)	160, 937
BamHI	GGATCC	1 cut(s)	1030
BanII	GRGCYC	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	2 cut(s)	56, 581
BceAI	ACGGC	1 cut(s)	720
BcgI	CGANNNNNNTGC	2 cut(s)	399, 433
BciT130I	CCWGG	1 cut(s)	902
BcoDI	GTCTC	1 cut(s)	677
BfaI	CTAG	1 cut(s)	228
BfrI	CTTAAG	1 cut(s)	329
BisI	GCNGC	3 cut(s)	23, 47, 484
BlsI	GCNGC	3 cut(s)	24, 48, 485
Bme1390I	CCNGG	1 cut(s)	902
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	2 cut(s)	548, 814
BmiI	GGNNCC	3 cut(s)	240, 450, 1032
BmrFI	CCNGG	1 cut(s)	902
BmsI	GCATC	1 cut(s)	502
BsaI	GGTCTC	1 cut(s)	677
BsaJI	CCNNGG	3 cut(s)	810, 901, 963
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 755
Bse1I	ACTGG	3 cut(s)	588, 1032, 1046
Bse3DI	GCAATG	2 cut(s)	394, 417
BseBI	CCWGG	1 cut(s)	902
BseDI	CCNNGG	3 cut(s)	810, 901, 963
BseGI	GGATG	4 cut(s)	67, 592, 897, 1042
BseLI	CCNNNNNNNGG	2 cut(s)	42, 755
BseMI	GCAATG	2 cut(s)	394, 417
BseMII	CTCAG	2 cut(s)	1008, 1053
BseNI	ACTGG	3 cut(s)	588, 1032, 1046
BseSI	GKGCMC	2 cut(s)	160, 937
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	996
BshFI	GGCC	1 cut(s)	816
BslI	CCNNNNNNNGG	2 cut(s)	42, 755
BsmAI	GTCTC	1 cut(s)	677
BsnI	GGCC	1 cut(s)	816
Bso31I	GGTCTC	1 cut(s)	677
Bsp1286I	GDGCHC	3 cut(s)	160, 341, 937
Bsp143I	GATC	3 cut(s)	319, 730, 1030
BspACI	CCGC	3 cut(s)	23, 483, 604
BspANI	GGCC	1 cut(s)	816
BspCNI	CTCAG	2 cut(s)	1009, 1054
BspLI	GGNNCC	3 cut(s)	240, 450, 1032
BspPI	GGATC	3 cut(s)	738, 1025, 1038
BspTI	CTTAAG	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	677
BsrDI	GCAATG	2 cut(s)	394, 417
BsrI	ACTGG	3 cut(s)	588, 1032, 1046
BssECI	CCNNGG	3 cut(s)	810, 901, 963
BssMI	GATC	3 cut(s)	319, 730, 1030
BssNAI	GTATAC	1 cut(s)	368
BssT1I	CCWWGG	2 cut(s)	810, 963
Bst1107I	GTATAC	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	902
Bst4CI	ACNGT	6 cut(s)	122, 128, 170, 250, 594, 880
Bst6I	CTCTTC	1 cut(s)	849
BstAFI	CTTAAG	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	3 cut(s)	842, 1017, 1062
BstENI	CCTNNNNNAGG	1 cut(s)	753
BstF5I	GGATG	4 cut(s)	67, 592, 897, 1042
BstKTI	GATC	3 cut(s)	322, 733, 1033
BstMAI	GTCTC	1 cut(s)	677
BstMBI	GATC	3 cut(s)	319, 730, 1030
BstMWI	GCNNNNNNNGC	1 cut(s)	489
BstNI	CCWGG	1 cut(s)	902
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	900
BstSLI	GKGCMC	2 cut(s)	160, 937
BstV1I	GCAGC	1 cut(s)	58
BstX2I	RGATCY	2 cut(s)	730, 1030
BstYI	RGATCY	2 cut(s)	730, 1030
BstZ17I	GTATAC	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	816
BtsCI	GGATG	4 cut(s)	67, 592, 897, 1042
BtsIMutI	CAGTG	3 cut(s)	89, 160, 1053
Cac8I	GCNNGC	1 cut(s)	284
CaiI	CAGNNNCTG	1 cut(s)	878
Cfr13I	GGNCC	2 cut(s)	548, 814
CseI	GACGC	1 cut(s)	84
CviAII	CATG	2 cut(s)	268, 523
DdeI	CTNAG	3 cut(s)	842, 1017, 1062
DpnI	GATC	3 cut(s)	321, 732, 1032
DpnII	GATC	3 cut(s)	319, 730, 1030
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Eco130I	CCWWGG	2 cut(s)	810, 963
Eco24I	GRGCYC	1 cut(s)	341
Eco31I	GGTCTC	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	136
EcoNI	CCTNNNNNAGG	1 cut(s)	753
EcoO109I	RGGNCCY	1 cut(s)	814
EcoRII	CCWGG	1 cut(s)	900
EcoT14I	CCWWGG	2 cut(s)	810, 963
EcoT38I	GRGCYC	1 cut(s)	341
ErhI	CCWWGG	2 cut(s)	810, 963
FaeI	CATG	2 cut(s)	271, 526
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FatI	CATG	2 cut(s)	267, 522
FblI	GTMKAC	1 cut(s)	367
Fnu4HI	GCNGC	3 cut(s)	23, 47, 484
FokI	GGATG	4 cut(s)	74, 599, 884, 1029
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	3 cut(s)	23, 47, 484
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	3 cut(s)	23, 47, 484
HaeIII	GGCC	1 cut(s)	816
HgaI	GACGC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	271, 526
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	102, 433, 983
Hpy166II	GTNNAC	4 cut(s)	36, 166, 368, 551
Hpy188I	TCNGA	1 cut(s)	1063
Hpy188III	TCNNGA	4 cut(s)	99, 452, 775, 950
Hpy8I	GTNNAC	4 cut(s)	36, 166, 368, 551
HpyAV	CCTTC	8 cut(s)	52, 82, 160, 187, 328, 397, 638, 759
HpyCH4III	ACNGT	6 cut(s)	122, 128, 170, 250, 594, 880
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	9 cut(s)	72, 286, 387, 492, 515, 702, 725, 741, 977
HpyF10VI	GCNNNNNNNGC	1 cut(s)	489
HpyF3I	CTNAG	3 cut(s)	842, 1017, 1062
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	271, 526
Kzo9I	GATC	3 cut(s)	319, 730, 1030
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	5 cut(s)	96, 122, 250, 460, 880
MalI	GATC	3 cut(s)	321, 732, 1032
MboI	GATC	3 cut(s)	319, 730, 1030
MboII	GAAGA	5 cut(s)	97, 408, 513, 723, 866
MflI	RGATCY	2 cut(s)	730, 1030
MhlI	GDGCHC	3 cut(s)	160, 341, 937
MluCI	AATT	7 cut(s)	210, 259, 626, 714, 795, 1011, 1068
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	1 cut(s)	621
MnlI	CCTC	8 cut(s)	175, 224, 265, 418, 490, 839, 1012, 1057
MroXI	GAANNNNTTC	2 cut(s)	837, 945
MseI	TTAA	3 cut(s)	330, 1010, 1072
MspCI	CTTAAG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	902
MvaI	CCWGG	1 cut(s)	902
MwoI	GCNNNNNNNGC	1 cut(s)	489
NdeII	GATC	3 cut(s)	319, 730, 1030
NlaIII	CATG	2 cut(s)	271, 526
NlaIV	GGNNCC	3 cut(s)	240, 450, 1032
NmuCI	GTSAC	1 cut(s)	96
NspI	RCATGY	1 cut(s)	526
PciI	ACATGT	1 cut(s)	522
PdmI	GAANNNNTTC	2 cut(s)	837, 945
PfeI	GAWTC	2 cut(s)	102, 983
PflMI	CCANNNNNTGG	1 cut(s)	42
PkrI	GCNGC	3 cut(s)	24, 48, 485
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PscI	ACATGT	1 cut(s)	522
Psp1406I	AACGTT	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	900
PspGI	CCWGG	1 cut(s)	900
PspN4I	GGNNCC	3 cut(s)	240, 450, 1032
PspPI	GGNCC	2 cut(s)	548, 814
PstNI	CAGNNNCTG	1 cut(s)	878
PsuI	RGATCY	2 cut(s)	730, 1030
SaqAI	TTAA	3 cut(s)	330, 1010, 1072
SatI	GCNGC	3 cut(s)	23, 47, 484
Sau3AI	GATC	3 cut(s)	319, 730, 1030
Sau96I	GGNCC	2 cut(s)	548, 814
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	902
SduI	GDGCHC	3 cut(s)	160, 341, 937
SfaNI	GCATC	1 cut(s)	502
SinI	GGWCC	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	7 cut(s)	210, 259, 626, 714, 795, 1011, 1068
SsiI	CCGC	3 cut(s)	23, 483, 604
SspI	AATATT	2 cut(s)	562, 682
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	900
StyI	CCWWGG	2 cut(s)	810, 963
TaaI	ACNGT	6 cut(s)	122, 128, 170, 250, 594, 880
TaiI	ACGT	1 cut(s)	144
TaqII	GACCGA	1 cut(s)	659
TasI	AATT	7 cut(s)	210, 259, 626, 714, 795, 1011, 1068
TauI	GCSGC	2 cut(s)	25, 486
TfiI	GAWTC	2 cut(s)	102, 983
Tru1I	TTAA	3 cut(s)	330, 1010, 1072
Tru9I	TTAA	3 cut(s)	330, 1010, 1072
TscAI	CASTG	3 cut(s)	89, 160, 1053
TseFI	GTSAC	1 cut(s)	96
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	96
TspDTI	ATGAA	7 cut(s)	32, 131, 405, 416, 551, 554, 1031
TspGWI	ACGGA	2 cut(s)	393, 902
TspRI	CASTG	3 cut(s)	89, 160, 1053
Van91I	CCANNNNNTGG	1 cut(s)	42
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	548
XagI	CCTNNNNNAGG	1 cut(s)	753
XapI	RAATTY	1 cut(s)	1068
XceI	RCATGY	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	367
XmnI	GAANNNNTTC	2 cut(s)	837, 945
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.