Prupe.7G008500_v2.0.a1

Belongs to the small heat shock protein (HSP20) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
1178764 .. 1180348
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G008500.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 444 bp
ATGGACACCAAATCTAATTATTACGATTATTTTGAACCCTTTTGCAAATGGCAAAGTGGGGAAATCAGCAACACTCTGAGAGTCCATCTCCAAGGCTTCCAACGGGATCAAATAAACGTGCAGGTCAAGTTTGGCAAAATATTGATCGAAGGAGAACGTGAATATGTTTTGGAAGGAACCTCAGCAACAAGATGGAAGCGCTTCAGCAAAGAAATACCACTTGAAAGAAGAGAATACAAGCTGTGCAATATGAAAACAAAATTTGAAGCAGGTGTTCTTTCTATAATTCTGCCTAAGAAAGTTCATAAAGCAGATCAACTTGGCCTGAGTAAATTAGTCTCAACGTTGAATGTTACGAGGACTACTGTGGAAGTCATGCTAGCAGTTTCCATGGGGTTGGCTGTTGGGGCATATGGAACATACAAATTAATATTCCCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

16.92

Weight (kDa)

9.44

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 260
Acc36I ACCTGC 2 cut(s) 112, 260
AclI AACGTT 1 cut(s) 344
AclWI GGATC 1 cut(s) 114
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 187
AfeI AGCGCT 1 cut(s) 200
AgsI TTSAA 4 cut(s) 35, 224, 266, 349
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 343
AlwI GGATC 1 cut(s) 114
Aor51HI AGCGCT 1 cut(s) 200
AoxI GGCC 1 cut(s) 322
ApoI RAATTY 1 cut(s) 260
AseI ATTAAT 1 cut(s) 428
Asp700I GAANNNNTTC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 201
AsuNHI GCTAGC 1 cut(s) 379
BbvCI CCTCAGC 1 cut(s) 181
BccI CCATC 2 cut(s) 93, 186
BcoDI GTCTC 1 cut(s) 343
BfaI CTAG 1 cut(s) 380
BfoI RGCGCY 1 cut(s) 202
BfuAI ACCTGC 2 cut(s) 112, 260
BmiI GGNNCC 1 cut(s) 178
BmtI GCTAGC 1 cut(s) 383
BplI GAGNNNNNCTC 2 cut(s) 72, 104
Bpu10I CCTNAGC 1 cut(s) 181
BsaJI CCNNGG 2 cut(s) 91, 390
BseDI CCNNGG 2 cut(s) 91, 390
BseMII CTCAG 3 cut(s) 68, 195, 317
BsgI GTGCAG 1 cut(s) 140
BshFI GGCC 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 343
BsnI GGCC 1 cut(s) 324
Bsp143I GATC 3 cut(s) 106, 144, 313
Bsp19I CCATGG 1 cut(s) 390
BspANI GGCC 1 cut(s) 324
BspCNI CTCAG 3 cut(s) 69, 194, 318
BspLI GGNNCC 1 cut(s) 178
BspMI ACCTGC 2 cut(s) 112, 260
BspOI GCTAGC 1 cut(s) 383
BspPI GGATC 1 cut(s) 114
BssECI CCNNGG 2 cut(s) 91, 390
BssMI GATC 3 cut(s) 106, 144, 313
BssT1I CCWWGG 2 cut(s) 91, 390
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 4 cut(s) 77, 181, 294, 326
BstDSI CCRYGG 1 cut(s) 390
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 3 cut(s) 109, 147, 316
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 3 cut(s) 106, 144, 313
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstXI CCANNNNNNTGG 1 cut(s) 397
BsuRI GGCC 1 cut(s) 324
BtgI CCRYGG 1 cut(s) 390
BveI ACCTGC 2 cut(s) 112, 260
Cac8I GCNNGC 1 cut(s) 381
CfoI GCGC 1 cut(s) 201
CviAII CATG 2 cut(s) 376, 391
CviJI RGCY 4 cut(s) 96, 241, 324, 401
CviKI_1 RGCY 4 cut(s) 96, 241, 324, 401
DdeI CTNAG 4 cut(s) 77, 181, 294, 326
DpnI GATC 3 cut(s) 108, 146, 315
DpnII GATC 3 cut(s) 106, 144, 313
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Eco130I CCWWGG 2 cut(s) 91, 390
Eco47III AGCGCT 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 187
EcoT14I CCWWGG 2 cut(s) 91, 390
ErhI CCWWGG 2 cut(s) 91, 390
FaeI CATG 2 cut(s) 379, 394
FaiI YATR 9 cut(s) 165, 251, 284, 306, 377, 392, 412, 414, 421
FatI CATG 2 cut(s) 375, 390
FauNDI CATATG 1 cut(s) 412
FspBI CTAG 1 cut(s) 380
GlaI GCGC 1 cut(s) 200
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 1 cut(s) 324
HhaI GCGC 1 cut(s) 201
Hin1II CATG 2 cut(s) 379, 394
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HinfI GANTC 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 143, 167
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 3 cut(s) 117, 157, 344
HpyCH4V TGCA 3 cut(s) 45, 121, 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 4 cut(s) 77, 181, 294, 326
HpySE526I ACGT 3 cut(s) 117, 157, 344
Hsp92II CATG 2 cut(s) 379, 394
HspAI GCGC 1 cut(s) 199
Kzo9I GATC 3 cut(s) 106, 144, 313
LpnPI CCDG 3 cut(s) 107, 255, 338
MaeI CTAG 1 cut(s) 380
MaeII ACGT 3 cut(s) 117, 157, 344
MaeIII GTNAC 1 cut(s) 352
MalI GATC 3 cut(s) 108, 146, 315
MboI GATC 3 cut(s) 106, 144, 313
MboII GAAGA 1 cut(s) 240
MluCI AATT 6 cut(s) 16, 260, 285, 332, 425, 439
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 2 cut(s) 190, 351
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 2 cut(s) 428, 442
MwoI GCNNNNNNNGC 1 cut(s) 407
NcoI CCATGG 1 cut(s) 390
NdeI CATATG 1 cut(s) 412
NdeII GATC 3 cut(s) 106, 144, 313
NheI GCTAGC 1 cut(s) 379
NlaIII CATG 2 cut(s) 379, 394
NlaIV GGNNCC 1 cut(s) 178
PaqCI CACCTGC 1 cut(s) 260
PdmI GAANNNNTTC 1 cut(s) 200
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PshBI ATTAAT 1 cut(s) 428
Psp1406I AACGTT 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 178
SaqAI TTAA 2 cut(s) 428, 442
Sau3AI GATC 3 cut(s) 106, 144, 313
SchI GAGTC 1 cut(s) 90
SetI ASST 7 cut(s) 120, 126, 160, 182, 243, 274, 347
Sse9I AATT 6 cut(s) 16, 260, 285, 332, 425, 439
SspI AATATT 2 cut(s) 141, 432
SspMI CTAG 1 cut(s) 380
StyI CCWWGG 2 cut(s) 91, 390
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 3 cut(s) 120, 160, 347
TaqI TCGA 1 cut(s) 147
TasI AATT 6 cut(s) 16, 260, 285, 332, 425, 439
Tru1I TTAA 2 cut(s) 428, 442
Tru9I TTAA 2 cut(s) 428, 442
TspDTI ATGAA 2 cut(s) 266, 293
VspI ATTAAT 1 cut(s) 428
XapI RAATTY 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.