Prupe.7G009000_v2.0.a1

60S ribosome subunit biogenesis protein NIP7 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Reverse (-)
1208218 .. 1208727
510 bp
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UTR
Exon/CDS
Intron
Prupe.7G009000.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 468 bp
ATGAGACCTTTAGATGAGACTGAGACCACAGCAGTTTTCGAAAAGCTTTTCAAGTTCACAGGCAACAACCTCAAAAACATCGTCGAGAACCCTTCCCTCCACAAAAACAAGGTCTACTATGTTAGCGAATCACTAGTAAAGCGTGCTACAAATATATCTCGGACTCAGTTAGTGTCTATTGGGACTTGTATTGGTAGGTTCACTCACGGTGGCAGTTTCCACTTAACTGTTCAGTGTTTGAGTTCATTAGCCTCAAATGCTAAACACAAGGTCTGGCTCAAACCTACTTCCGAGATGTCCTTCTTATACGGAAACCATGTTTTGAAAGGTGGTTTGGGGAGGATTACAGAAAATATTGTGCCCAGTGATGGGGTGGTTGTGTTTCCAATGTCAGATGTCCCGTTAGGTTCTGGGATTGCCACCACTACAAAAAGTGAAAAAGACGACCAGAAAACAACGACGGTCTAG

Protein Analysis

156

Amino Acids

16.99

Weight (kDa)

9.3

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 368, 369
AgsI TTSAA 2 cut(s) 52, 325
AhlI ACTAGT 1 cut(s) 133
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
Alw26I GTCTC 2 cut(s) 11, 17
ArsI GACNNNNNNTTYG 4 cut(s) 66, 96, 98, 128
AsuII TTCGAA 1 cut(s) 39
BaeGI GKGCMC 1 cut(s) 363
BccI CCATC 1 cut(s) 362
BcoDI GTCTC 2 cut(s) 11, 17
BcuI ACTAGT 1 cut(s) 133
BfaI CTAG 2 cut(s) 134, 466
BmrI ACTGGG 1 cut(s) 357
BmuI ACTGGG 1 cut(s) 357
Bpu14I TTCGAA 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 17
Bsc4I CCNNNNNNNGG 2 cut(s) 368, 369
Bse1I ACTGG 1 cut(s) 363
BseLI CCNNNNNNNGG 2 cut(s) 368, 369
BseMII CTCAG 2 cut(s) 12, 179
BseNI ACTGG 1 cut(s) 363
BseSI GKGCMC 1 cut(s) 363
BslFI GGGAC 2 cut(s) 196, 383
BslI CCNNNNNNNGG 2 cut(s) 368, 369
BsmAI GTCTC 2 cut(s) 11, 17
BsmFI GGGAC 2 cut(s) 196, 383
Bso31I GGTCTC 1 cut(s) 17
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 363
BspCNI CTCAG 2 cut(s) 13, 178
BspT104I TTCGAA 1 cut(s) 39
BspTNI GGTCTC 1 cut(s) 17
BsrI ACTGG 1 cut(s) 363
Bst4CI ACNGT 3 cut(s) 209, 229, 463
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 21, 165
BstMAI GTCTC 2 cut(s) 11, 17
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstSLI GKGCMC 1 cut(s) 363
BtsIMutI CAGTG 2 cut(s) 239, 370
Cac8I GCNNGC 1 cut(s) 144
CviAII CATG 1 cut(s) 317
CviJI RGCY 3 cut(s) 46, 251, 277
CviKI_1 RGCY 3 cut(s) 46, 251, 277
DdeI CTNAG 2 cut(s) 21, 165
Eco31I GGTCTC 1 cut(s) 17
FaeI CATG 1 cut(s) 320
FaiI YATR 4 cut(s) 120, 155, 307, 318
FaqI GGGAC 2 cut(s) 196, 383
FatI CATG 1 cut(s) 316
FblI GTMKAC 1 cut(s) 114
FspBI CTAG 2 cut(s) 134, 466
Hin1II CATG 1 cut(s) 320
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 2 cut(s) 128, 163
Hpy166II GTNNAC 3 cut(s) 57, 115, 201
Hpy188I TCNGA 3 cut(s) 162, 292, 394
Hpy188III TCNNGA 1 cut(s) 85
Hpy8I GTNNAC 3 cut(s) 57, 115, 201
Hpy99I CGWCG 2 cut(s) 86, 463
HpyAV CCTTC 2 cut(s) 102, 310
HpyCH4III ACNGT 3 cut(s) 209, 229, 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 2 cut(s) 21, 165
Hsp92II CATG 1 cut(s) 320
LpnPI CCDG 5 cut(s) 45, 259, 376, 396, 461
MaeI CTAG 2 cut(s) 134, 466
MhlI GDGCHC 1 cut(s) 363
MlyI GAGTC 1 cut(s) 157
MnlI CCTC 4 cut(s) 80, 107, 262, 333
MseI TTAA 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 257
NlaIII CATG 1 cut(s) 320
NspV TTCGAA 1 cut(s) 39
PfeI GAWTC 1 cut(s) 128
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 224
SchI GAGTC 1 cut(s) 157
SduI GDGCHC 1 cut(s) 363
SetI ASST 9 cut(s) 10, 48, 72, 114, 200, 273, 286, 331, 409
SfuI TTCGAA 1 cut(s) 39
SpeI ACTAGT 1 cut(s) 133
SspI AATATT 1 cut(s) 355
SspMI CTAG 2 cut(s) 134, 466
TaaI ACNGT 3 cut(s) 209, 229, 463
TaqI TCGA 2 cut(s) 39, 84
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TscAI CASTG 2 cut(s) 239, 370
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 2 cut(s) 239, 370
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 2 cut(s) 134, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.