Prupe.7G010300_v2.0.a1

Mitochondrial inner membrane protease subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
1377857 .. 1378956
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G010300.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 480 bp
ATGGTAGGTGTCATGTTAACGTATATACTTGTTATCCATCTCAAAGATTATACGACTTCCCTCTCTCTCCCCCAATTTTCTGTATATGCTCTGTACTCTCCCATGGCGTCGAGATACATAAGGGAGTTTTTGGCTTTGGAGGCATTTAAAAACGCAGGGAGAGACGTAAGCGACATCCTTCCACGACTAGTAAAGTTCCTCTACTGCCTCCAAGTCACCAAGACACACCTGTTCACCGTCACTCTGTCCTACAGTCCCAACATGCTCCTAACCCTTGGCCTGCCCGGTAATTTGTGCTTGGCTGAATGCATCTCAACCCAGTTCAACAAACTGGGTGTTGGGGACATTGTACTCGTACAGTCCCCTGAGGTTCCTTGGAAGTTCATGACCAAGCGCTTGATAGCCATGGAAGGCCAGTCTGTTACATATGTTGTCGACCCTAAGAACAGTGACAAGTCTGAGACTATTGTGGTATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24

Protein Analysis

160

Amino Acids

17.84

Weight (kDa)

8.33

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 435
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 3 cut(s) 95, 351, 357
AfeI AGCGCT 1 cut(s) 395
AgsI TTSAA 1 cut(s) 325
AhlI ACTAGT 1 cut(s) 187
Alw26I GTCTC 2 cut(s) 156, 455
Aor51HI AGCGCT 1 cut(s) 395
AoxI GGCC 2 cut(s) 277, 412
AspLEI GCGC 1 cut(s) 396
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 2 cut(s) 208, 226
AxyI CCTNAGG 1 cut(s) 366
BccI CCATC 1 cut(s) 45
BcnI CCSGG 1 cut(s) 285
BcoDI GTCTC 2 cut(s) 156, 455
BcuI ACTAGT 1 cut(s) 187
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 250
BfoI RGCGCY 1 cut(s) 397
Bme1390I CCNGG 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 1 cut(s) 285
BmrI ACTGGG 2 cut(s) 313, 341
BmsI GCATC 1 cut(s) 318
BmuI ACTGGG 2 cut(s) 313, 341
BpuMI CCSGG 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 4 cut(s) 102, 274, 374, 405
Bse1I ACTGG 3 cut(s) 319, 336, 415
Bse21I CCTNAGG 1 cut(s) 366
BseDI CCNNGG 4 cut(s) 102, 274, 374, 405
BseGI GGATG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 357, 450
BseNI ACTGG 3 cut(s) 319, 336, 415
BshFI GGCC 2 cut(s) 279, 414
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 3 cut(s) 240, 346, 356
BsmAI GTCTC 2 cut(s) 156, 455
BsmBI CGTCTC 1 cut(s) 156
BsmFI GGGAC 3 cut(s) 240, 346, 356
BsmI GAATGC 1 cut(s) 311
BsnI GGCC 2 cut(s) 279, 414
Bsp19I CCATGG 2 cut(s) 102, 405
BspANI GGCC 2 cut(s) 279, 414
BspCNI CTCAG 2 cut(s) 358, 451
BspHI TCATGA 1 cut(s) 384
BspLI GGNNCC 1 cut(s) 372
BsrI ACTGG 3 cut(s) 319, 336, 415
BssECI CCNNGG 4 cut(s) 102, 274, 374, 405
BssNI GRCGYC 1 cut(s) 107
BssT1I CCWWGG 4 cut(s) 102, 274, 374, 405
Bst4CI ACNGT 4 cut(s) 238, 254, 360, 449
BstACI GRCGYC 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 3 cut(s) 366, 441, 459
BstDSI CCRYGG 2 cut(s) 102, 405
BstF5I GGATG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 397
BstHHI GCGC 1 cut(s) 396
BstMAI GTCTC 2 cut(s) 156, 455
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 250
Bsu36I CCTNAGG 1 cut(s) 366
BsuRI GGCC 2 cut(s) 279, 414
BtgI CCRYGG 2 cut(s) 102, 405
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 454
Cac8I GCNNGC 1 cut(s) 281
CciI TCATGA 1 cut(s) 384
CfoI GCGC 1 cut(s) 396
CseI GACGC 1 cut(s) 96
Csp6I GTAC 3 cut(s) 94, 350, 356
CviAII CATG 5 cut(s) 13, 103, 262, 385, 406
CviJI RGCY 5 cut(s) 134, 279, 302, 404, 414
CviKI_1 RGCY 5 cut(s) 134, 279, 302, 404, 414
CviQI GTAC 3 cut(s) 94, 350, 356
DdeI CTNAG 3 cut(s) 366, 441, 459
DraI TTTAAA 1 cut(s) 148
Eco130I CCWWGG 4 cut(s) 102, 274, 374, 405
Eco47III AGCGCT 1 cut(s) 395
Eco81I CCTNAGG 1 cut(s) 366
EcoT14I CCWWGG 4 cut(s) 102, 274, 374, 405
EcoT22I ATGCAT 1 cut(s) 311
ErhI CCWWGG 4 cut(s) 102, 274, 374, 405
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 5 cut(s) 16, 106, 265, 388, 409
FaqI GGGAC 3 cut(s) 240, 346, 356
FatI CATG 5 cut(s) 12, 102, 261, 384, 405
FauNDI CATATG 1 cut(s) 427
FblI GTMKAC 1 cut(s) 435
FokI GGATG 1 cut(s) 161
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 395
HaeII RGCGCY 1 cut(s) 397
HaeIII GGCC 2 cut(s) 279, 414
HapII CCGG 1 cut(s) 285
HgaI GACGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 396
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 5 cut(s) 16, 106, 265, 388, 409
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HincII GTYRAC 2 cut(s) 18, 436
HindII GTYRAC 2 cut(s) 18, 436
HpaI GTTAAC 1 cut(s) 18
HpaII CCGG 1 cut(s) 285
HphI GGTGA 2 cut(s) 208, 226
Hpy166II GTNNAC 3 cut(s) 18, 234, 436
Hpy188I TCNGA 1 cut(s) 460
Hpy188III TCNNGA 2 cut(s) 111, 385
Hpy8I GTNNAC 3 cut(s) 18, 234, 436
Hpy99I CGWCG 1 cut(s) 112
HpyAV CCTTC 2 cut(s) 188, 404
HpyCH4III ACNGT 4 cut(s) 238, 254, 360, 449
HpyCH4IV ACGT 2 cut(s) 20, 165
HpyCH4V TGCA 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 3 cut(s) 366, 441, 459
HpySE526I ACGT 2 cut(s) 20, 165
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 5 cut(s) 16, 106, 265, 388, 409
HspAI GCGC 1 cut(s) 394
KspAI GTTAAC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 270
LpnPI CCDG 8 cut(s) 141, 242, 293, 298, 317, 332, 378, 428
LweI GCATC 1 cut(s) 318
MaeI CTAG 1 cut(s) 188
MaeII ACGT 2 cut(s) 20, 165
MaeIII GTNAC 4 cut(s) 214, 238, 421, 449
MluCI AATT 2 cut(s) 74, 289
MnlI CCTC 5 cut(s) 71, 133, 209, 218, 361
Mph1103I ATGCAT 1 cut(s) 311
MseI TTAA 3 cut(s) 17, 147, 478
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 140
NciI CCSGG 1 cut(s) 285
NcoI CCATGG 2 cut(s) 102, 405
NdeI CATATG 1 cut(s) 427
NlaIII CATG 5 cut(s) 16, 106, 265, 388, 409
NlaIV GGNNCC 1 cut(s) 372
NmuCI GTSAC 3 cut(s) 214, 238, 449
NsiI ATGCAT 1 cut(s) 311
NspI RCATGY 1 cut(s) 265
PagI TCATGA 1 cut(s) 384
PctI GAATGC 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 372
RsaI GTAC 3 cut(s) 95, 351, 357
RsaNI GTAC 3 cut(s) 94, 350, 356
SalI GTCGAC 1 cut(s) 434
SaqAI TTAA 3 cut(s) 17, 147, 478
ScrFI CCNGG 1 cut(s) 285
SetI ASST 5 cut(s) 10, 23, 168, 231, 372
SfaNI GCATC 1 cut(s) 318
SfcI CTRYAG 1 cut(s) 250
SpeI ACTAGT 1 cut(s) 187
Sse9I AATT 2 cut(s) 74, 289
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 4 cut(s) 102, 274, 374, 405
TaaI ACNGT 4 cut(s) 238, 254, 360, 449
TaiI ACGT 2 cut(s) 23, 168
TaqI TCGA 2 cut(s) 110, 435
TasI AATT 2 cut(s) 74, 289
TatI WGTACW 2 cut(s) 93, 349
Tru1I TTAA 3 cut(s) 17, 147, 478
Tru9I TTAA 3 cut(s) 17, 147, 478
TscAI CASTG 1 cut(s) 454
TseFI GTSAC 3 cut(s) 214, 238, 449
Tsp45I GTSAC 3 cut(s) 214, 238, 449
TspDTI ATGAA 1 cut(s) 373
TspRI CASTG 1 cut(s) 454
XceI RCATGY 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 435
XspI CTAG 1 cut(s) 188
Zsp2I ATGCAT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.