Prupe.7G018900_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Reverse (-)
2836954 .. 2837595
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G018900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 642 bp
ATGAGGTCGCTGTTACTCTTAGGTGTTTTGTTTGCAGTTGTAACAATTTTTTTCTTCCCTTTTGAGGCCCATGCCAACAAATTGGTTCCGAAAGAGGGAAGGAAAGAAAAGATTGGCCATCATGTCCTAGTGAACGTCCATTCTGGCAGAAAGCTAGATGGTGAAAATGAACAAACTGCGGAAAATGGCGGCGGTGATAGCGGAGACAACGAAGATGGAGATAGTGAGGACGGAGGCAATGAAGATGGAGCGAGTGATGGTAGTGAGAACGGAGATGGAGAGAGTGATGGTAGTGAGAACGGAGGCAATGAAGATGGAGAGAGTGGTAGTGGTAATGGAGGGAATGAAGACGGAGAAAACGGTGGCAGCGGAGACAGTGCTGAGGGTGGTGATAACGGAGGAGGTAATGAGGATGGGGATAGTGCCGAGGGTGGTGATAACGGAGGAGGGAATGAAGATGGGGCGAGTGGTGACAACGGGGATAGTGCCGAGGGTGGTGATGACGGAGGAGGGAATGAGGATGGGGAGAATGGTGACAACGGGGATAGTGCCGAGGGTGGTGATAACGAAGGAAATGAAGATGATGGTGGCGACGAGGTTTTCAGAAAAACATCTAAACATAGCCCAGAAGTTCCCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

21.1

Weight (kDa)

4.05

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 179, 189, 192, 201, 369
AcoI YGGCCR 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 64, 95
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 2 cut(s) 198, 366
AoxI GGCC 2 cut(s) 66, 115
ApeKI GCWGC 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 8 cut(s) 173, 206, 401, 446, 482, 509, 545, 572
BalI TGGCCA 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 354
BbvCI CCTCAGC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 378
BcoDI GTCTC 2 cut(s) 198, 366
BfaI CTAG 2 cut(s) 128, 155
BisI GCNGC 2 cut(s) 190, 367
BlsI GCNGC 2 cut(s) 191, 368
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 354
Bpu10I CCTNAGC 1 cut(s) 381
BsaJI CCNNGG 3 cut(s) 426, 489, 552
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 95
Bse3DI GCAATG 2 cut(s) 244, 313
BseDI CCNNGG 3 cut(s) 426, 489, 552
BseGI GGATG 2 cut(s) 418, 526
BseLI CCNNNNNNNGG 2 cut(s) 64, 95
BseMI GCAATG 2 cut(s) 244, 313
BseMII CTCAG 1 cut(s) 372
BseRI GAGGAG 3 cut(s) 414, 459, 522
BseXI GCAGC 1 cut(s) 378
BshFI GGCC 2 cut(s) 68, 117
BslI CCNNNNNNNGG 2 cut(s) 64, 95
BsmAI GTCTC 2 cut(s) 198, 366
BsnI GGCC 2 cut(s) 68, 117
BspACI CCGC 5 cut(s) 179, 189, 192, 201, 369
BspANI GGCC 2 cut(s) 68, 117
BspCNI CTCAG 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 87
BsrDI GCAATG 2 cut(s) 244, 313
BssECI CCNNGG 3 cut(s) 426, 489, 552
Bst4CI ACNGT 2 cut(s) 362, 377
BstDEI CTNAG 2 cut(s) 19, 381
BstF5I GGATG 2 cut(s) 418, 526
BstMAI GTCTC 2 cut(s) 198, 366
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 378
BstV2I GAAGAC 1 cut(s) 354
BstXI CCANNNNNNTGG 1 cut(s) 82
BsuRI GGCC 2 cut(s) 68, 117
BtsCI GGATG 2 cut(s) 418, 526
BtsIMutI CAGTG 1 cut(s) 382
Cfr13I GGNCC 1 cut(s) 67
CviAII CATG 2 cut(s) 71, 122
CviJI RGCY 4 cut(s) 68, 117, 154, 624
CviKI_1 RGCY 4 cut(s) 68, 117, 154, 624
DdeI CTNAG 2 cut(s) 19, 381
EaeI YGGCCR 1 cut(s) 115
FaeI CATG 2 cut(s) 74, 125
FaiI YATR 3 cut(s) 72, 123, 621
FatI CATG 2 cut(s) 70, 121
Fnu4HI GCNGC 2 cut(s) 190, 367
FokI GGATG 2 cut(s) 425, 533
Fsp4HI GCNGC 2 cut(s) 190, 367
FspBI CTAG 2 cut(s) 128, 155
GluI GCNGC 2 cut(s) 190, 367
HaeIII GGCC 2 cut(s) 68, 117
Hin1II CATG 2 cut(s) 74, 125
HphI GGTGA 8 cut(s) 173, 206, 401, 446, 482, 509, 545, 572
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 2 cut(s) 90, 605
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 596
HpyAV CCTTC 2 cut(s) 93, 563
HpyCH4III ACNGT 2 cut(s) 362, 377
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 2 cut(s) 19, 381
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 2 cut(s) 74, 125
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 1 cut(s) 129
Lsp1109I GCAGC 1 cut(s) 378
MaeI CTAG 2 cut(s) 128, 155
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 4 cut(s) 12, 40, 470, 533
MboII GAAGA 7 cut(s) 46, 224, 254, 323, 359, 467, 590
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 2 cut(s) 45, 80
MluNI TGGCCA 1 cut(s) 117
Mox20I TGGCCA 1 cut(s) 117
MscI TGGCCA 1 cut(s) 117
MseI TTAA 1 cut(s) 640
Msp20I TGGCCA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 369
MwoI GCNNNNNNNGC 1 cut(s) 198
NlaIII CATG 2 cut(s) 74, 125
NlaIV GGNNCC 1 cut(s) 87
NmeAIII GCCGAG 3 cut(s) 451, 514, 577
NmuCI GTSAC 2 cut(s) 470, 533
PkrI GCNGC 2 cut(s) 191, 368
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 67
SaqAI TTAA 1 cut(s) 640
SatI GCNGC 2 cut(s) 190, 367
Sau96I GGNCC 1 cut(s) 67
SetI ASST 6 cut(s) 8, 25, 138, 156, 406, 600
Sse9I AATT 2 cut(s) 45, 80
SsiI CCGC 5 cut(s) 179, 189, 192, 201, 369
SspMI CTAG 2 cut(s) 128, 155
TaaI ACNGT 2 cut(s) 362, 377
TaiI ACGT 1 cut(s) 138
TasI AATT 2 cut(s) 45, 80
TauI GCSGC 1 cut(s) 192
Tru1I TTAA 1 cut(s) 640
Tru9I TTAA 1 cut(s) 640
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 2 cut(s) 470, 533
TseI GCWGC 1 cut(s) 366
Tsp45I GTSAC 2 cut(s) 470, 533
TspDTI ATGAA 6 cut(s) 183, 255, 324, 360, 468, 591
TspGWI ACGGA 7 cut(s) 246, 285, 315, 366, 411, 456, 519
TspRI CASTG 1 cut(s) 382
XspI CTAG 2 cut(s) 128, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.