Prupe.7G020800_v2.0.a1

Belongs to the SKP1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Reverse (-)
3087616 .. 3088046
431 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G020800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 357 bp
ATGAAGAAGATAACCTTGAAGAGCGATGACGGTGAGACCTTCGAGGTGGAAGAGGCTGTGGCCATCAACACCTTAGGAAAGATGATCGAGTACTACAAGAAGCATCATGAAGAGGCTATTGATGGCAATTGGGATGCTGATTTCGTGAAGGTGGACCAGAGCACTCTATTTGACCTAATACTGACTGGAAACTATCGAAACATCACGAGCCTGCTGGATTTGACTTGCCAGACTGTGGCAGACATGATCAAGGGAAAGACACTTGAAAAGATTCGTGAGACCTTTAACATCAAGAATGACTTCATGACTGAGAAAGAAGAGGAGGTTCATAAGGAGAACCAGTGGGCATTCGAGTGA
Functional Annotation

Protein Analysis

119

Amino Acids

13.77

Weight (kDa)

4.75

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 60
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 2 cut(s) 19, 266
Alw21I GWGCWC 1 cut(s) 164
Alw26I GTCTC 2 cut(s) 29, 272
AoxI GGCC 1 cut(s) 60
Asp700I GAANNNNTTC 2 cut(s) 270, 299
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 154
AxyI CCTNAGG 1 cut(s) 73
BalI TGGCCA 1 cut(s) 62
BauI CACGAG 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 164
BccI CCATC 2 cut(s) 71, 116
BclI TGATCA 1 cut(s) 246
BcoDI GTCTC 2 cut(s) 29, 272
BmcAI AGTACT 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmsI GCATC 2 cut(s) 112, 124
BsaI GGTCTC 2 cut(s) 29, 272
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse1I ACTGG 2 cut(s) 190, 340
Bse21I CCTNAGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 2 cut(s) 190, 340
BseRI GAGGAG 1 cut(s) 335
BshFI GGCC 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 2 cut(s) 29, 272
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 1 cut(s) 62
Bso31I GGTCTC 2 cut(s) 29, 272
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 2 cut(s) 84, 246
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 301
BspHI TCATGA 2 cut(s) 106, 303
BspQI GCTCTTC 1 cut(s) 14
BspTNI GGTCTC 2 cut(s) 29, 272
BsrI ACTGG 2 cut(s) 190, 340
BssMI GATC 2 cut(s) 84, 246
BssSI CACGAG 1 cut(s) 205
Bst2BI CACGAG 1 cut(s) 205
Bst4CI ACNGT 2 cut(s) 32, 235
Bst6I CTCTTC 4 cut(s) 14, 45, 105, 312
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 2 cut(s) 73, 309
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 2 cut(s) 87, 249
BstMAI GTCTC 2 cut(s) 29, 272
BstMBI GATC 2 cut(s) 84, 246
Bsu36I CCTNAGG 1 cut(s) 73
BsuRI GGCC 1 cut(s) 62
BtgZI GCGATG 1 cut(s) 39
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 347
Cac8I GCNNGC 1 cut(s) 212
CciI TCATGA 2 cut(s) 106, 303
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 91
CviAII CATG 3 cut(s) 107, 244, 304
CviJI RGCY 4 cut(s) 56, 62, 116, 210
CviKI_1 RGCY 4 cut(s) 56, 62, 116, 210
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 2 cut(s) 73, 309
DpnI GATC 2 cut(s) 86, 248
DpnII GATC 2 cut(s) 84, 246
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 4 cut(s) 14, 45, 105, 312
EarI CTCTTC 4 cut(s) 14, 45, 105, 312
Eco31I GGTCTC 2 cut(s) 29, 272
Eco47I GGWCC 1 cut(s) 154
Eco81I CCTNAGG 1 cut(s) 73
FaeI CATG 3 cut(s) 110, 247, 307
FaiI YATR 4 cut(s) 108, 245, 305, 330
FalI AAGNNNNNCTT 3 cut(s) 31, 284, 316
FatI CATG 3 cut(s) 106, 243, 303
FbaI TGATCA 1 cut(s) 246
FokI GGATG 1 cut(s) 146
HaeIII GGCC 1 cut(s) 62
Hin1II CATG 3 cut(s) 110, 247, 307
HinfI GANTC 1 cut(s) 271
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 154
Hpy188III TCNNGA 6 cut(s) 107, 145, 205, 275, 292, 304
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 49, 142
HpyCH4III ACNGT 2 cut(s) 32, 235
HpyF3I CTNAG 2 cut(s) 73, 309
Hsp92II CATG 3 cut(s) 110, 247, 307
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 2 cut(s) 84, 246
LguI GCTCTTC 1 cut(s) 14
LpnPI CCDG 6 cut(s) 170, 171, 200, 224, 242, 353
LweI GCATC 2 cut(s) 112, 124
MalI GATC 2 cut(s) 86, 248
MboI GATC 2 cut(s) 84, 246
MboII GAAGA 6 cut(s) 16, 19, 31, 62, 122, 329
MfeI CAATTG 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 164
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 1 cut(s) 127
MluNI TGGCCA 1 cut(s) 62
MnlI CCTC 5 cut(s) 37, 46, 106, 313, 316
Mox20I TGGCCA 1 cut(s) 62
MroXI GAANNNNTTC 2 cut(s) 270, 299
MscI TGGCCA 1 cut(s) 62
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 352
Msp20I TGGCCA 1 cut(s) 62
MunI CAATTG 1 cut(s) 127
Mva1269I GAATGC 1 cut(s) 347
NdeII GATC 2 cut(s) 84, 246
NlaIII CATG 3 cut(s) 110, 247, 307
PagI TCATGA 2 cut(s) 106, 303
PciSI GCTCTTC 1 cut(s) 14
PctI GAATGC 1 cut(s) 347
PdmI GAANNNNTTC 2 cut(s) 270, 299
PfeI GAWTC 1 cut(s) 271
PflMI CCANNNNNTGG 1 cut(s) 235
PspPI GGNCC 1 cut(s) 154
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 352
SapI GCTCTTC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 285
Sau3AI GATC 2 cut(s) 84, 246
Sau96I GGNCC 1 cut(s) 154
ScaI AGTACT 1 cut(s) 92
SduI GDGCHC 1 cut(s) 164
SetI ASST 8 cut(s) 17, 41, 48, 74, 153, 177, 284, 327
SfaNI GCATC 2 cut(s) 112, 124
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 1 cut(s) 352
Sse9I AATT 1 cut(s) 127
TaaI ACNGT 2 cut(s) 32, 235
TaqI TCGA 4 cut(s) 42, 87, 196, 351
TasI AATT 1 cut(s) 127
TatI WGTACW 1 cut(s) 90
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 347
TspDTI ATGAA 4 cut(s) 17, 123, 292, 317
TspRI CASTG 1 cut(s) 347
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 154
XmnI GAANNNNTTC 2 cut(s) 270, 299
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.