Prupe.7G021400_v2.0.a1

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Reverse (-)
3235334 .. 3238215
2882 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G021400.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 477 bp
ATGTCGAAACGAGGTCGTGGAGGGTCTGCCGGAAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCTGCCACAGTGAACTGCGCAGACAACACCGGTGCTAAGAACCTTTACATAATTTCTGTAAAGGGAATCAAGGGTCGCCTTAACCGCCTCCCTTCTGCTTGTGTTGGTGACATGGTGATGGCAACTGTCAAGAACTCGGGCCCGCCCAAACCCAGAACCTTAATCACCAACCTGTTCCCAAGGACTCGGGCCGTTTGCAAATCCCCTCAAGCAGACTCACTAGAGACTCGGTCTCTCGGACCAAATTGCCATTCAAAAGCGCCGAGACTCGCTCCTCTTCTTTGTCTTTCTCCACGATGCAGGAATTCGAGCCGACGAAGAAACCCAGAAGCCGAGATGTTAAGAGGAGTTTTTCGATGTACTGAGCGTACCATCGGACCCAGGAGGAGAGCTCCCAGGCGACAGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L14

Protein Analysis

159

Amino Acids

17.21

Weight (kDa)

11.66

Isoelectric Point (pI)

64.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 85
AccIII TCCGGA 1 cut(s) 42
AciI CCGC 2 cut(s) 151, 209
AcsI RAATTY 1 cut(s) 370
AfaI GTAC 2 cut(s) 427, 436
AgeI ACCGGT 1 cut(s) 95
AgsI TTSAA 1 cut(s) 321
AjnI CCWGG 2 cut(s) 446, 461
AjuI GAANNNNNNNTTGG 2 cut(s) 301, 333
AluBI AGCT 1 cut(s) 458
AluI AGCT 1 cut(s) 458
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 3 cut(s) 284, 303, 325
Ama87I CYCGRG 2 cut(s) 202, 252
Aor13HI TCCGGA 1 cut(s) 42
AoxI GGCC 2 cut(s) 205, 255
ApaI GGGCCC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 370
AsiGI ACCGGT 1 cut(s) 95
AspLEI GCGC 2 cut(s) 86, 328
AspS9I GGNCC 5 cut(s) 205, 206, 255, 305, 443
AsuHPI GGTGA 3 cut(s) 185, 193, 223
AvaI CYCGRG 2 cut(s) 202, 252
AvaII GGWCC 2 cut(s) 305, 443
BaeGI GKGCMC 1 cut(s) 209
BanII GRGCYC 2 cut(s) 209, 460
Bbv12I GWGCWC 1 cut(s) 460
BbvI GCAGC 1 cut(s) 55
BccI CCATC 2 cut(s) 178, 446
BceAI ACGGC 1 cut(s) 242
BciT130I CCWGG 2 cut(s) 448, 463
BcoDI GTCTC 3 cut(s) 284, 303, 325
BfaI CTAG 1 cut(s) 287
BfoI RGCGCY 1 cut(s) 329
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 2 cut(s) 448, 463
Bme18I GGWCC 2 cut(s) 305, 443
BmeT110I CYCGRG 2 cut(s) 202, 252
BmgT120I GGNCC 5 cut(s) 205, 206, 255, 305, 443
BmiI GGNNCC 2 cut(s) 207, 445
BmrFI CCNGG 2 cut(s) 448, 463
BmsI GCATC 1 cut(s) 353
BplI GAGNNNNNCTC 4 cut(s) 322, 354, 442, 474
BpuEI CTTGAG 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 303
BsaJI CCNNGG 3 cut(s) 245, 446, 461
BsaWI WCCGGW 2 cut(s) 42, 95
Bse118I RCCGGY 2 cut(s) 61, 95
BseAI TCCGGA 1 cut(s) 42
BseBI CCWGG 2 cut(s) 448, 463
BseDI CCNNGG 3 cut(s) 245, 446, 461
BseGI GGATG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 420
BseRI GAGGAG 3 cut(s) 330, 426, 466
BseSI GKGCMC 1 cut(s) 209
BseXI GCAGC 1 cut(s) 55
BseYI CCCAGC 1 cut(s) 52
BshFI GGCC 2 cut(s) 207, 257
BshTI ACCGGT 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 460
BsiHKCI CYCGRG 2 cut(s) 202, 252
BsiSI CCGG 4 cut(s) 30, 43, 62, 96
BsmAI GTCTC 3 cut(s) 284, 303, 325
BsnI GGCC 2 cut(s) 207, 257
Bso31I GGTCTC 1 cut(s) 303
BsoBI CYCGRG 2 cut(s) 202, 252
Bsp120I GGGCCC 1 cut(s) 205
Bsp1286I GDGCHC 2 cut(s) 209, 460
Bsp13I TCCGGA 1 cut(s) 42
BspACI CCGC 2 cut(s) 151, 209
BspANI GGCC 2 cut(s) 207, 257
BspCNI CTCAG 1 cut(s) 421
BspEI TCCGGA 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 207, 445
BspTNI GGTCTC 1 cut(s) 303
BsrFI RCCGGY 2 cut(s) 61, 95
BssAI RCCGGY 2 cut(s) 61, 95
BssECI CCNNGG 3 cut(s) 245, 446, 461
BssT1I CCWWGG 1 cut(s) 245
Bst2UI CCWGG 2 cut(s) 448, 463
Bst4CI ACNGT 2 cut(s) 76, 193
Bst6I CTCTTC 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 2 cut(s) 102, 429
BstF5I GGATG 1 cut(s) 51
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 2 cut(s) 86, 328
BstMAI GTCTC 3 cut(s) 284, 303, 325
BstMWI GCNNNNNNNGC 2 cut(s) 58, 150
BstNI CCWGG 2 cut(s) 448, 463
BstSCI CCNGG 2 cut(s) 446, 461
BstSLI GKGCMC 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 55
BsuRI GGCC 2 cut(s) 207, 257
BtsCI GGATG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 209
CfoI GCGC 2 cut(s) 86, 328
Cfr10I RCCGGY 2 cut(s) 61, 95
Cfr13I GGNCC 5 cut(s) 205, 206, 255, 305, 443
Csp6I GTAC 2 cut(s) 426, 435
CspAI ACCGGT 1 cut(s) 95
CviAII CATG 1 cut(s) 178
CviJI RGCY 6 cut(s) 68, 207, 257, 378, 398, 458
CviKI_1 RGCY 6 cut(s) 68, 207, 257, 378, 398, 458
CviQI GTAC 2 cut(s) 426, 435
DdeI CTNAG 2 cut(s) 102, 429
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Ecl136II GAGCTC 1 cut(s) 458
Eco130I CCWWGG 1 cut(s) 245
Eco24I GRGCYC 2 cut(s) 209, 460
Eco31I GGTCTC 1 cut(s) 303
Eco47I GGWCC 2 cut(s) 305, 443
Eco53kI GAGCTC 1 cut(s) 458
Eco88I CYCGRG 2 cut(s) 202, 252
EcoICRI GAGCTC 1 cut(s) 458
EcoRI GAATTC 1 cut(s) 370
EcoRII CCWGG 2 cut(s) 446, 461
EcoT14I CCWWGG 1 cut(s) 245
EcoT38I GRGCYC 2 cut(s) 209, 460
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 1 cut(s) 181
FaiI YATR 2 cut(s) 116, 179
FatI CATG 1 cut(s) 177
FauI CCCGC 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 58
FriOI GRGCYC 2 cut(s) 209, 460
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 287
FspI TGCGCA 1 cut(s) 85
GlaI GCGC 2 cut(s) 85, 327
GluI GCNGC 1 cut(s) 69
GsaI CCCAGC 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 329
HaeIII GGCC 2 cut(s) 207, 257
HapII CCGG 4 cut(s) 30, 43, 62, 96
HhaI GCGC 2 cut(s) 86, 328
Hin1II CATG 1 cut(s) 181
Hin6I GCGC 2 cut(s) 84, 326
HinP1I GCGC 2 cut(s) 84, 326
HinfI GANTC 5 cut(s) 132, 250, 281, 292, 333
HpaII CCGG 4 cut(s) 30, 43, 62, 96
HphI GGTGA 3 cut(s) 185, 193, 223
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 305, 443
Hpy188III TCNNGA 2 cut(s) 43, 196
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 384
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 2 cut(s) 76, 193
HpyCH4V TGCA 2 cut(s) 264, 366
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 150
HpyF3I CTNAG 2 cut(s) 102, 429
Hsp92II CATG 1 cut(s) 181
HspAI GCGC 2 cut(s) 84, 326
Kpn2I TCCGGA 1 cut(s) 42
LmnI GCTCC 2 cut(s) 343, 463
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 353
MaeI CTAG 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 173
MboII GAAGA 2 cut(s) 335, 396
MhlI GDGCHC 2 cut(s) 209, 460
MluCI AATT 3 cut(s) 117, 310, 370
MlyI GAGTC 4 cut(s) 244, 275, 286, 327
MnlI CCTC 7 cut(s) 5, 14, 164, 282, 351, 404, 444
MroI TCCGGA 1 cut(s) 42
MseI TTAA 3 cut(s) 147, 227, 407
MslI CAYNNNNRTG 1 cut(s) 182
MspI CCGG 4 cut(s) 30, 43, 62, 96
MspR9I CCNGG 2 cut(s) 448, 463
MvaI CCWGG 2 cut(s) 448, 463
MwoI GCNNNNNNNGC 2 cut(s) 58, 150
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 2 cut(s) 207, 445
NmeAIII GCCGAG 2 cut(s) 354, 424
NmuCI GTSAC 1 cut(s) 173
NsbI TGCGCA 1 cut(s) 85
PfeI GAWTC 1 cut(s) 132
PflFI GACNNNGTC 1 cut(s) 295
PinAI ACCGGT 1 cut(s) 95
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 4 cut(s) 244, 275, 286, 327
PpsI GAGTC 4 cut(s) 244, 275, 286, 327
Psp124BI GAGCTC 1 cut(s) 460
Psp6I CCWGG 2 cut(s) 446, 461
PspFI CCCAGC 1 cut(s) 52
PspGI CCWGG 2 cut(s) 446, 461
PspN4I GGNNCC 2 cut(s) 207, 445
PspOMI GGGCCC 1 cut(s) 205
PspPI GGNCC 5 cut(s) 205, 206, 255, 305, 443
PsyI GACNNNGTC 1 cut(s) 295
RsaI GTAC 2 cut(s) 427, 436
RsaNI GTAC 2 cut(s) 426, 435
RseI CAYNNNNRTG 1 cut(s) 182
SacI GAGCTC 1 cut(s) 460
SaqAI TTAA 3 cut(s) 147, 227, 407
SatI GCNGC 1 cut(s) 69
Sau96I GGNCC 5 cut(s) 205, 206, 255, 305, 443
SchI GAGTC 4 cut(s) 244, 275, 286, 327
ScrFI CCNGG 2 cut(s) 448, 463
SduI GDGCHC 2 cut(s) 209, 460
SetI ASST 5 cut(s) 16, 111, 227, 240, 460
SfaNI GCATC 1 cut(s) 353
SgrAI CRCCGGYG 1 cut(s) 95
SinI GGWCC 2 cut(s) 305, 443
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 3 cut(s) 117, 310, 370
SsiI CCGC 2 cut(s) 151, 209
SspMI CTAG 1 cut(s) 287
SstI GAGCTC 1 cut(s) 460
StyD4I CCNGG 2 cut(s) 446, 461
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 2 cut(s) 76, 193
TaqI TCGA 3 cut(s) 5, 374, 421
TaqII GACCGA 1 cut(s) 285
TasI AATT 3 cut(s) 117, 310, 370
TatI WGTACW 1 cut(s) 425
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 3 cut(s) 147, 227, 407
Tru9I TTAA 3 cut(s) 147, 227, 407
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 173
TspRI CASTG 1 cut(s) 81
Tth111I GACNNNGTC 1 cut(s) 295
VpaK11BI GGWCC 2 cut(s) 305, 443
XapI RAATTY 1 cut(s) 370
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.