Prupe.7G032600_v2.0.a1

50S ribosomal protein 6

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
6019397 .. 6020982
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G032600.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 222 bp
ATGTTGTTTTGCAATGGGGAAGTGGTTCCTCCTCAACTCTCCTCGTGGCGAAATCCAATTTGTTGCCAAAGATGTGAAGGAGGCTGCGTCAGAGGCATCCCCTCGAAATGCCCGGTTGAATTGGAGACGGCTTGGATTGTGCATCGAGTACTGAAGAGCTTGGATTGTGCAGCAAGTACTGAATTTGTTGTGGCACTGGAACACCAAGGAGTTTGTAAGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

74

Amino Acids

8.03

Weight (kDa)

6.69

Isoelectric Point (pI)

22.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 173
AfaI GTAC 2 cut(s) 150, 178
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 84, 170
ApoI RAATTY 1 cut(s) 182
Asp700I GAANNNNTTC 1 cut(s) 24
AsuC2I CCSGG 1 cut(s) 113
BauI CACGAG 1 cut(s) 43
BbvI GCAGC 2 cut(s) 71, 182
BceAI ACGGC 1 cut(s) 144
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 119
BisI GCNGC 2 cut(s) 85, 171
BlsI GCNGC 2 cut(s) 86, 172
BmcAI AGTACT 2 cut(s) 150, 178
Bme1390I CCNGG 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 105, 151
BpuMI CCSGG 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 205
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bse1I ACTGG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 96
BseMI GCAATG 1 cut(s) 19
BseNI ACTGG 1 cut(s) 201
BseRI GAGGAG 2 cut(s) 21, 31
BseXI GCAGC 2 cut(s) 71, 182
BsgI GTGCAG 1 cut(s) 189
BsiSI CCGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 27
BspQI GCTCTTC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 205
BssSI CACGAG 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 205
Bst2BI CACGAG 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 149
BstF5I GGATG 1 cut(s) 96
BstMAI GTCTC 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 71, 182
BtsCI GGATG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 194
CseI GACGC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 149, 177
CviJI RGCY 3 cut(s) 84, 131, 159
CviKI_1 RGCY 3 cut(s) 84, 131, 159
CviQI GTAC 2 cut(s) 149, 177
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 205
Esp3I CGTCTC 1 cut(s) 119
Fnu4HI GCNGC 2 cut(s) 85, 171
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 2 cut(s) 85, 171
GluI GCNGC 2 cut(s) 85, 171
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 76
HpaII CCGG 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 71
HpyCH4V TGCA 3 cut(s) 12, 142, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
LguI GCTCTTC 1 cut(s) 149
LpnPI CCDG 2 cut(s) 126, 182
Lsp1109I GCAGC 2 cut(s) 71, 182
LweI GCATC 2 cut(s) 105, 151
MboII GAAGA 1 cut(s) 166
MluCI AATT 3 cut(s) 57, 119, 182
MnlI CCTC 6 cut(s) 39, 42, 52, 74, 86, 112
MroXI GAANNNNTTC 1 cut(s) 24
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 93
NciI CCSGG 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 27
PciSI GCTCTTC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 24
PkrI GCNGC 2 cut(s) 86, 172
PspN4I GGNNCC 1 cut(s) 27
RsaI GTAC 2 cut(s) 150, 178
RsaNI GTAC 2 cut(s) 149, 177
SapI GCTCTTC 1 cut(s) 149
SatI GCNGC 2 cut(s) 85, 171
ScaI AGTACT 2 cut(s) 150, 178
ScrFI CCNGG 1 cut(s) 113
SetI ASST 1 cut(s) 161
SfaNI GCATC 2 cut(s) 105, 151
Sse9I AATT 3 cut(s) 57, 119, 182
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 205
TaqI TCGA 2 cut(s) 104, 145
TasI AATT 3 cut(s) 57, 119, 182
TatI WGTACW 2 cut(s) 148, 176
TscAI CASTG 1 cut(s) 201
TseI GCWGC 2 cut(s) 84, 170
TspRI CASTG 1 cut(s) 201
XapI RAATTY 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 24
ZrmI AGTACT 2 cut(s) 150, 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.