Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6179531 .. 6182871

Gene Structure 3341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G033200.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGATGAGACAGTTGGTAGACATGAGGAGAGGGCCAATGGATCTTTGGCTGAACAATCCGGGACAGAGCATGAAGATTATGTTTCTGGAGTGCTGTATGATATGTTACAGAAAGAGGTCGTATCTTTGAGGAAAGCTTGCCATGAGAAAGATCAAACCCTCAAGGACAAGGATGATGCAATTGAGATGTTGGCAAAGAAGGTGGATACACTTAACAAAGCAATGGAGGTTGAGGCCAAAAAGATGCGGAGAGAAGTAGCTGCCATGGAAAAAGAAGTCTCTGCTATGCGTGTCACCAAGGAGCCTGATCAGAGGGCACGGCGCTCAAGTGCTCCCCGAGGGGTTGTAAATAGCTCTCATACACTTTCTTCTAGGAATGCACACAAGTCTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP70

Protein Analysis

132

Amino Acids

14.8

Weight (kDa)

7.88

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	19
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	1 cut(s)	49
AluBI	AGCT	3 cut(s)	137, 260, 354
AluI	AGCT	3 cut(s)	137, 260, 354
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	2 cut(s)	2, 283
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	2 cut(s)	33, 234
ApeKI	GCWGC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	286
AvaI	CYCGRG	1 cut(s)	336
BaeGI	GKGCMC	1 cut(s)	319
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	335
BciVI	GTATCC	1 cut(s)	199
BclI	TGATCA	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	2, 283
BfaI	CTAG	2 cut(s)	372, 390
BfoI	RGCGCY	1 cut(s)	325
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	2 cut(s)	166, 234
BpmI	CTGGAG	1 cut(s)	108
BpuEI	CTTGAG	2 cut(s)	146, 310
BpuMI	CCSGG	1 cut(s)	61
BsaJI	CCNNGG	3 cut(s)	264, 297, 337
Bse3DI	GCAATG	1 cut(s)	228
BseDI	CCNNGG	3 cut(s)	264, 297, 337
BseGI	GGATG	2 cut(s)	10, 178
BseMI	GCAATG	1 cut(s)	228
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	1 cut(s)	247
BshFI	GGCC	2 cut(s)	35, 236
BsiHKAI	GWGCWC	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	76
BsmAI	GTCTC	2 cut(s)	2, 283
BsmFI	GGGAC	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	35, 236
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	319, 334
Bsp143I	GATC	3 cut(s)	41, 151, 307
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	2 cut(s)	35, 236
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	228
BssECI	CCNNGG	3 cut(s)	264, 297, 337
BssMI	GATC	3 cut(s)	41, 151, 307
BssT1I	CCWWGG	2 cut(s)	264, 297
Bst4CI	ACNGT	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	139
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	10, 178
BstH2I	RGCGCY	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	3 cut(s)	44, 154, 310
BstMAI	GTCTC	2 cut(s)	2, 283
BstMBI	GATC	3 cut(s)	41, 151, 307
BstSCI	CCNGG	1 cut(s)	59
BstSLI	GKGCMC	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	35, 236
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	10, 178
Cac8I	GCNNGC	1 cut(s)	139
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	33
CspCI	CAANNNNNGTGG	2 cut(s)	183, 218
CviAII	CATG	4 cut(s)	23, 71, 143, 265
CviJI	RGCY	7 cut(s)	35, 50, 137, 236, 260, 304, 354
CviKI_1	RGCY	7 cut(s)	35, 50, 137, 236, 260, 304, 354
DpnI	GATC	3 cut(s)	43, 153, 309
DpnII	GATC	3 cut(s)	41, 151, 307
Eco130I	CCWWGG	2 cut(s)	264, 297
Eco88I	CYCGRG	1 cut(s)	336
EcoT14I	CCWWGG	2 cut(s)	264, 297
ErhI	CCWWGG	2 cut(s)	264, 297
FaeI	CATG	4 cut(s)	26, 74, 146, 268
FaiI	YATR	9 cut(s)	24, 72, 81, 99, 104, 144, 266, 287, 360
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	4 cut(s)	22, 70, 142, 264
FbaI	TGATCA	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	2 cut(s)	17, 185
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	2 cut(s)	372, 390
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	108
HaeII	RGCGCY	1 cut(s)	325
HaeIII	GGCC	2 cut(s)	35, 236
HapII	CCGG	1 cut(s)	60
HhaI	GCGC	1 cut(s)	324
Hin1II	CATG	4 cut(s)	26, 74, 146, 268
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	135
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	1 cut(s)	87
Hpy8I	GTNNAC	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4V	TGCA	2 cut(s)	179, 380
Hsp92II	CATG	4 cut(s)	26, 74, 146, 268
HspAI	GCGC	1 cut(s)	322
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	3 cut(s)	41, 151, 307
LmnI	GCTCC	2 cut(s)	301, 337
LpnPI	CCDG	3 cut(s)	72, 73, 318
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	2 cut(s)	166, 234
MaeI	CTAG	2 cut(s)	372, 390
MaeIII	GTNAC	2 cut(s)	105, 292
MalI	GATC	3 cut(s)	43, 153, 309
MboI	GATC	3 cut(s)	41, 151, 307
MboII	GAAGA	2 cut(s)	86, 360
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	2 cut(s)	319, 334
MluCI	AATT	1 cut(s)	180
MnlI	CCTC	9 cut(s)	19, 24, 109, 123, 170, 220, 226, 306, 332
MseI	TTAA	1 cut(s)	213
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	61
MunI	CAATTG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	382
NciI	CCSGG	1 cut(s)	61
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	3 cut(s)	41, 151, 307
NlaIII	CATG	4 cut(s)	26, 74, 146, 268
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	292
PctI	GAATGC	1 cut(s)	382
PfoI	TCCNGGA	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	3 cut(s)	41, 151, 307
Sau96I	GGNCC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	2 cut(s)	319, 334
SetI	ASST	7 cut(s)	120, 139, 204, 231, 262, 356, 395
SfaNI	GCATC	2 cut(s)	166, 234
SmlI	CTYRAG	2 cut(s)	161, 325
SmoI	CTYRAG	2 cut(s)	161, 325
Sse9I	AATT	1 cut(s)	180
SsiI	CCGC	1 cut(s)	247
SspMI	CTAG	2 cut(s)	372, 390
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	2 cut(s)	264, 297
TaaI	ACNGT	1 cut(s)	13
TasI	AATT	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	87
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	19
XspI	CTAG	2 cut(s)	372, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.