Prupe.7G040600_v2.0.a1

Belongs to the DEFL family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
7559064 .. 7559552
489 bp
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UTR
Exon/CDS
Intron
Prupe.7G040600.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 225 bp
ATGTGTGAACAAGTTTGTGTTCTTGCACAAGCTTTGATCCCTCTTTATACACGGCATATCGATCGTACCACTTTCCTATTTCAATTTGACTATGTTCAAACTTCAAATCACAATGGCCCTTGCGTTCGTCACCAAAACTGTGCTCATGTTTGCAAGACTGAAGGTTTCAGCAGCGGCCATTGCCGAGGGCTTCTTCTACTTCGAAGATGTATTTGCACAAAGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.48

Weight (kDa)

8.74

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 174
AclWI GGATC 1 cut(s) 31
AcoI YGGCCR 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 1 cut(s) 67
AgsI TTSAA 3 cut(s) 83, 98, 105
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
Alw21I GWGCWC 1 cut(s) 145
AlwI GGATC 1 cut(s) 31
AoxI GGCC 2 cut(s) 115, 175
ApeKI GCWGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 122
AsuII TTCGAA 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 183
BceAI ACGGC 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BisI GCNGC 2 cut(s) 172, 175
BlsI GCNGC 2 cut(s) 173, 176
BmgT120I GGNCC 1 cut(s) 116
Bpu14I TTCGAA 1 cut(s) 202
Bsa29I ATCGAT 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 178
BseCI ATCGAT 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 184
BseMI GCAATG 1 cut(s) 178
BseXI GCAGC 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 64
BshFI GGCC 2 cut(s) 117, 177
BshVI ATCGAT 1 cut(s) 60
BsiEI CGRYCG 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 145
BsnI GGCC 2 cut(s) 117, 177
Bsp119I TTCGAA 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 2 cut(s) 36, 61
BspACI CCGC 1 cut(s) 174
BspANI GGCC 2 cut(s) 117, 177
BspDI ATCGAT 1 cut(s) 60
BspPI GGATC 1 cut(s) 31
BspT104I TTCGAA 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 2 cut(s) 36, 61
Bst4CI ACNGT 1 cut(s) 140
BstBI TTCGAA 1 cut(s) 202
BstKTI GATC 2 cut(s) 39, 64
BstMBI GATC 2 cut(s) 36, 61
BstMCI CGRYCG 1 cut(s) 64
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 183
Bsu15I ATCGAT 1 cut(s) 60
BsuRI GGCC 2 cut(s) 117, 177
BsuTUI ATCGAT 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 116
ClaI ATCGAT 1 cut(s) 60
Csp6I GTAC 1 cut(s) 66
CviAII CATG 1 cut(s) 146
CviJI RGCY 4 cut(s) 32, 117, 177, 190
CviKI_1 RGCY 4 cut(s) 32, 117, 177, 190
CviQI GTAC 1 cut(s) 66
DpnI GATC 2 cut(s) 38, 63
DpnII GATC 2 cut(s) 36, 61
EaeI YGGCCR 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 180
FaeI CATG 1 cut(s) 149
FaiI YATR 4 cut(s) 48, 57, 93, 147
FatI CATG 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 172, 175
Fsp4HI GCNGC 2 cut(s) 172, 175
GluI GCNGC 2 cut(s) 172, 175
HaeIII GGCC 2 cut(s) 117, 177
Hin1II CATG 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 30
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 8
Hpy8I GTNNAC 1 cut(s) 8
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 3 cut(s) 26, 153, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
Hsp92II CATG 1 cut(s) 149
Kzo9I GATC 2 cut(s) 36, 61
Lsp1109I GCAGC 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 128
MalI GATC 2 cut(s) 38, 63
MboI GATC 2 cut(s) 36, 61
MboII GAAGA 2 cut(s) 185, 216
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 1 cut(s) 83
MnlI CCTC 2 cut(s) 51, 179
MspA1I CMGCKG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 180
NdeII GATC 2 cut(s) 36, 61
NlaIII CATG 1 cut(s) 149
NmeAIII GCCGAG 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 128
NspV TTCGAA 1 cut(s) 202
PkrI GCNGC 2 cut(s) 173, 176
Ple19I CGATCG 1 cut(s) 64
PspPI GGNCC 1 cut(s) 116
PvuI CGATCG 1 cut(s) 64
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SatI GCNGC 2 cut(s) 172, 175
Sau3AI GATC 2 cut(s) 36, 61
Sau96I GGNCC 1 cut(s) 116
SduI GDGCHC 1 cut(s) 145
SetI ASST 2 cut(s) 34, 166
SfuI TTCGAA 1 cut(s) 202
SgeI CNNG 8 cut(s) 23, 35, 41, 63, 132, 158, 166, 197
Sse9I AATT 1 cut(s) 83
SsiI CCGC 1 cut(s) 174
TaaI ACNGT 1 cut(s) 140
TaqI TCGA 2 cut(s) 60, 202
TasI AATT 1 cut(s) 83
TauI GCSGC 1 cut(s) 177
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.