Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7949185 .. 7951659

Gene Structure 2475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G043300.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCTTAAAGTTCATCAAAGTTCATCAAACTTCTCAGGAAGAACTTTAGAGCTATTTGGAGAAATGGTAAGTTTGGAGCAGAAGCCTGATGGCTTTACGTTCATTGTAGTTCTAATTGCGTGTAGCCATGCTAGGTTGGTTAAGGAGGGGCTAAAATATTTCAACCAGATGCAGAGCTTGTATGGAATTGATCCAAAAATAGAGCATTACGCATGTGTGGTGGACATGCTTGGTCGGAGTGGCCAATTTATGTATCATCATGCACCCTACGGCACATATGCAACATCTCTGTTGAATTTACTTTTGAATGTCAACTTTGTTCTTTGTAAGTATTTTTTAATGCCCCTTCCAATTTGGTTTAAAATTCAGGACCTTGATAAACCTCCTCTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

132

Amino Acids

15.04

Weight (kDa)

7.74

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	2 cut(s)	295, 363
AgsI	TTSAA	3 cut(s)	163, 295, 307
AluBI	AGCT	2 cut(s)	52, 177
AluI	AGCT	2 cut(s)	52, 177
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	241
ApoI	RAATTY	2 cut(s)	295, 363
AspS9I	GGNCC	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	370
BalI	TGGCCA	1 cut(s)	243
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	286
BfaI	CTAG	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	370
BmsI	GCATC	1 cut(s)	159
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
BseMII	CTCAG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	375
BshFI	GGCC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	190
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	1 cut(s)	47
BspPI	GGATC	1 cut(s)	185
BssMI	GATC	1 cut(s)	190
BstDEI	CTNAG	1 cut(s)	34
BstKTI	GATC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	190
BstNSI	RCATGY	2 cut(s)	216, 229
BsuRI	GGCC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	370
CviAII	CATG	4 cut(s)	128, 213, 226, 260
CviJI	RGCY	7 cut(s)	52, 85, 93, 126, 151, 177, 243
CviKI_1	RGCY	7 cut(s)	52, 85, 93, 126, 151, 177, 243
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
DraI	TTTAAA	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	370
EcoO109I	RGGNCCY	1 cut(s)	370
FaeI	CATG	4 cut(s)	131, 216, 229, 263
FaiI	YATR	9 cut(s)	129, 183, 214, 227, 251, 261, 277, 279, 392
FatI	CATG	4 cut(s)	127, 212, 225, 259
FauNDI	CATATG	1 cut(s)	277
FspBI	CTAG	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	243
Hin1II	CATG	4 cut(s)	131, 216, 229, 263
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
Hpy166II	GTNNAC	2 cut(s)	223, 313
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	2 cut(s)	36, 368
Hpy8I	GTNNAC	2 cut(s)	223, 313
HpyAV	CCTTC	1 cut(s)	356
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	3 cut(s)	172, 263, 281
HpyF3I	CTNAG	1 cut(s)	34
HpySE526I	ACGT	1 cut(s)	98
Hsp92II	CATG	4 cut(s)	131, 216, 229, 263
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	4 cut(s)	21, 99, 179, 353
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	98
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	1 cut(s)	51
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	6 cut(s)	114, 186, 245, 295, 351, 363
MluNI	TGGCCA	1 cut(s)	243
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	3 cut(s)	139, 393, 396
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	4 cut(s)	6, 141, 338, 360
Msp20I	TGGCCA	1 cut(s)	243
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	4 cut(s)	131, 216, 229, 263
NspI	RCATGY	2 cut(s)	216, 229
PpuMI	RGGWCCY	1 cut(s)	370
Psp5II	RGGWCCY	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	370
PspPPI	RGGWCCY	1 cut(s)	370
SaqAI	TTAA	4 cut(s)	6, 141, 338, 360
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	370
SetI	ASST	6 cut(s)	54, 101, 137, 179, 375, 385
SfaNI	GCATC	1 cut(s)	159
SinI	GGWCC	1 cut(s)	370
Sse9I	AATT	6 cut(s)	114, 186, 245, 295, 351, 363
SspI	AATATT	1 cut(s)	158
SspMI	CTAG	1 cut(s)	132
TaiI	ACGT	1 cut(s)	101
TasI	AATT	6 cut(s)	114, 186, 245, 295, 351, 363
Tru1I	TTAA	4 cut(s)	6, 141, 338, 360
Tru9I	TTAA	4 cut(s)	6, 141, 338, 360
TspDTI	ATGAA	2 cut(s)	12, 91
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	2 cut(s)	295, 363
XceI	RCATGY	2 cut(s)	216, 229
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.