Prupe.7G043500_v2.0.a1

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
7970571 .. 7971857
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G043500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 792 bp
ATGGTGGACAAGGAGTTGTATAAGATCACACCAGAAGAAATTGCAACAATTCAGAATCAAAATAAGAATCGCAAACATACTGTTGTAGAAGACCGCATGCACGCGGGAAATTGGGTAAAATATTTGGAACCAAGGCTAGCAACATTCAGTTCTTTCCACCATGGTAAACCAAAGTACGAGCATGCAGAGGTTTTCAAGCTTAAATTAGTTGCAAACTTTAAAGCTGAGGAGAACATCAAGGAACTAAGAGAGTGCTATGATGAGGAAGCAACAAAGGACTATGACGACAAGTGCCTCGAGTGGATGTTGTTCGTTGATGCATGCTCGATGTCGTTAGAATTCATATACAAATATGATAAGTTAGAACAATTTAAGATCAAGAGAGAGCATGTGGCCTTTACACAACAGGACATGTTCATGGTAGAGAATCAACTTCCTTATAAACTCCTCAAGGCCTCGTATGGACAACTCCTTTATCTTCCTAAAACAAAAGTAGATGACTCGACGGGAGCCAAGTTCATGAACTTGATAGCCTATGAAATGTCTAGTGATTTCCAAAGCAATTTCGGGGACGTCACCTCTTACATATGCTTCCTCCATTTGCTCATTCATCATGCGGATGATGTGAAGCACCTCAAGGAAAAGTACATACTTGAAAACTCACTCATGAGTGACGAGGATGTGGCTCAACTCTTCAAGGAGATGGGCATTCAATTTGTACCTAACAATGACATTTACCACATTGTTAAAACCAAAATAGAAGATCACTGTACAACTAAGTGGAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

264

Amino Acids

31.18

Weight (kDa)

5.85

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 441
AatII GACGTC 1 cut(s) 576
AccII CGCG 1 cut(s) 104
AciI CCGC 3 cut(s) 94, 104, 617
AcsI RAATTY 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 573
AfaI GTAC 4 cut(s) 176, 647, 720, 772
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 4 cut(s) 196, 656, 697, 713
AluBI AGCT 2 cut(s) 199, 224
AluI AGCT 2 cut(s) 199, 224
Ama87I CYCGRG 1 cut(s) 296
AoxI GGCC 2 cut(s) 393, 453
ApoI RAATTY 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 568
AsuNHI GCTAGC 1 cut(s) 136
AvaI CYCGRG 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 225
BccI CCATC 1 cut(s) 697
BfaI CTAG 2 cut(s) 137, 546
BmeT110I CYCGRG 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 129, 511
BmsI GCATC 1 cut(s) 307
BmtI GCTAGC 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 225
BpuEI CTTGAG 2 cut(s) 434, 620
BsaHI GRCGYC 1 cut(s) 573
BsaJI CCNNGG 2 cut(s) 131, 160
BseDI CCNNGG 2 cut(s) 131, 160
BseGI GGATG 3 cut(s) 309, 625, 685
BseMII CTCAG 1 cut(s) 216
BseRI GAGGAG 2 cut(s) 242, 437
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 2 cut(s) 395, 455
BsiHKCI CYCGRG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 584
BsmFI GGGAC 1 cut(s) 584
BsmI GAATGC 1 cut(s) 708
BsnI GGCC 2 cut(s) 395, 455
BsoBI CYCGRG 1 cut(s) 296
Bsp1407I TGTACA 1 cut(s) 770
Bsp143I GATC 3 cut(s) 24, 375, 763
Bsp19I CCATGG 1 cut(s) 160
BspACI CCGC 3 cut(s) 94, 104, 617
BspANI GGCC 2 cut(s) 395, 455
BspCNI CTCAG 1 cut(s) 217
BspFNI CGCG 1 cut(s) 104
BspHI TCATGA 2 cut(s) 519, 666
BspLI GGNNCC 2 cut(s) 129, 511
BspOI GCTAGC 1 cut(s) 140
BsrGI TGTACA 1 cut(s) 770
BssECI CCNNGG 2 cut(s) 131, 160
BssMI GATC 3 cut(s) 24, 375, 763
BssNI GRCGYC 1 cut(s) 573
BssT1I CCWWGG 2 cut(s) 131, 160
Bst4CI ACNGT 2 cut(s) 82, 770
Bst6I CTCTTC 1 cut(s) 698
BstACI GRCGYC 1 cut(s) 573
BstAUI TGTACA 1 cut(s) 770
BstC8I GCNNGC 5 cut(s) 98, 102, 138, 183, 322
BstDEI CTNAG 3 cut(s) 225, 245, 777
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 3 cut(s) 309, 625, 685
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 3 cut(s) 27, 378, 766
BstMBI GATC 3 cut(s) 24, 375, 763
BstNSI RCATGY 5 cut(s) 100, 185, 324, 392, 415
BstUI CGCG 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 96
BsuRI GGCC 2 cut(s) 395, 455
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 3 cut(s) 309, 625, 685
BtsIMutI CAGTG 1 cut(s) 766
Cac8I GCNNGC 5 cut(s) 98, 102, 138, 183, 322
CciI TCATGA 2 cut(s) 519, 666
Csp6I GTAC 4 cut(s) 175, 646, 719, 771
CviJI RGCY 8 cut(s) 136, 199, 224, 395, 455, 512, 533, 686
CviKI_1 RGCY 8 cut(s) 136, 199, 224, 395, 455, 512, 533, 686
CviQI GTAC 4 cut(s) 175, 646, 719, 771
DdeI CTNAG 3 cut(s) 225, 245, 777
DpnI GATC 3 cut(s) 26, 377, 765
DpnII GATC 3 cut(s) 24, 375, 763
DraI TTTAAA 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 698
EarI CTCTTC 1 cut(s) 698
Eco130I CCWWGG 2 cut(s) 131, 160
Eco147I AGGCCT 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 296
EcoRI GAATTC 1 cut(s) 338
EcoT14I CCWWGG 2 cut(s) 131, 160
EcoT22I ATGCAT 1 cut(s) 322
ErhI CCWWGG 2 cut(s) 131, 160
FaqI GGGAC 1 cut(s) 584
FauI CCCGC 1 cut(s) 97
FauNDI CATATG 1 cut(s) 587
FokI GGATG 3 cut(s) 316, 632, 692
FspBI CTAG 2 cut(s) 137, 546
HaeIII GGCC 2 cut(s) 395, 455
Hin1I GRCGYC 1 cut(s) 573
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 4 cut(s) 55, 67, 427, 500
HphI GGTGA 1 cut(s) 568
Hpy166II GTNNAC 2 cut(s) 7, 167
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 3 cut(s) 379, 520, 667
Hpy8I GTNNAC 2 cut(s) 7, 167
Hpy99I CGWCG 1 cut(s) 508
HpyCH4III ACNGT 2 cut(s) 82, 770
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 5 cut(s) 44, 100, 185, 212, 320
HpyF3I CTNAG 3 cut(s) 225, 245, 777
HpySE526I ACGT 1 cut(s) 573
Hsp92I GRCGYC 1 cut(s) 573
Kzo9I GATC 3 cut(s) 24, 375, 763
LmnI GCTCC 1 cut(s) 509
LpnPI CCDG 2 cut(s) 45, 392
LweI GCATC 1 cut(s) 307
MaeI CTAG 2 cut(s) 137, 546
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 2 cut(s) 574, 671
MalI GATC 3 cut(s) 26, 377, 765
MboI GATC 3 cut(s) 24, 375, 763
MboII GAAGA 5 cut(s) 47, 101, 470, 685, 773
MluCI AATT 8 cut(s) 39, 48, 109, 203, 338, 368, 562, 713
MlyI GAGTC 1 cut(s) 494
Mph1103I ATGCAT 1 cut(s) 322
MseI TTAA 4 cut(s) 201, 219, 372, 747
MslI CAYNNNNRTG 2 cut(s) 416, 618
Mva1269I GAATGC 1 cut(s) 708
MvnI CGCG 1 cut(s) 104
NcoI CCATGG 1 cut(s) 160
NdeI CATATG 1 cut(s) 587
NdeII GATC 3 cut(s) 24, 375, 763
NheI GCTAGC 1 cut(s) 136
NlaIV GGNNCC 2 cut(s) 129, 511
NmuCI GTSAC 2 cut(s) 574, 671
NsiI ATGCAT 1 cut(s) 322
NspI RCATGY 5 cut(s) 100, 185, 324, 392, 415
PaeI GCATGC 3 cut(s) 100, 185, 324
PaeR7I CTCGAG 1 cut(s) 296
PagI TCATGA 2 cut(s) 519, 666
PceI AGGCCT 1 cut(s) 455
PciI ACATGT 1 cut(s) 411
PctI GAATGC 1 cut(s) 708
PfeI GAWTC 3 cut(s) 55, 67, 427
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
PscI ACATGT 1 cut(s) 411
PsiI TTATAA 1 cut(s) 441
PspN4I GGNNCC 2 cut(s) 129, 511
PspXI VCTCGAGB 1 cut(s) 296
RsaI GTAC 4 cut(s) 176, 647, 720, 772
RsaNI GTAC 4 cut(s) 175, 646, 719, 771
RseI CAYNNNNRTG 2 cut(s) 416, 618
SaqAI TTAA 4 cut(s) 201, 219, 372, 747
Sau3AI GATC 3 cut(s) 24, 375, 763
SchI GAGTC 1 cut(s) 494
SetI ASST 7 cut(s) 192, 201, 226, 576, 581, 636, 724
SfaNI GCATC 1 cut(s) 307
Sfr274I CTCGAG 1 cut(s) 296
SlaI CTCGAG 1 cut(s) 296
SmiMI CAYNNNNRTG 2 cut(s) 416, 618
SmlI CTYRAG 3 cut(s) 296, 449, 635
SmoI CTYRAG 3 cut(s) 296, 449, 635
SphI GCATGC 3 cut(s) 100, 185, 324
Sse9I AATT 8 cut(s) 39, 48, 109, 203, 338, 368, 562, 713
SseBI AGGCCT 1 cut(s) 455
SsiI CCGC 3 cut(s) 94, 104, 617
SspI AATATT 1 cut(s) 122
SspMI CTAG 2 cut(s) 137, 546
StuI AGGCCT 1 cut(s) 455
StyI CCWWGG 2 cut(s) 131, 160
TaaI ACNGT 2 cut(s) 82, 770
TaiI ACGT 1 cut(s) 576
TaqI TCGA 3 cut(s) 297, 326, 503
TasI AATT 8 cut(s) 39, 48, 109, 203, 338, 368, 562, 713
TatI WGTACW 2 cut(s) 645, 770
TfiI GAWTC 3 cut(s) 55, 67, 427
Tru1I TTAA 4 cut(s) 201, 219, 372, 747
Tru9I TTAA 4 cut(s) 201, 219, 372, 747
TscAI CASTG 1 cut(s) 773
TseFI GTSAC 2 cut(s) 574, 671
Tsp45I GTSAC 2 cut(s) 574, 671
TspDTI ATGAA 6 cut(s) 331, 406, 508, 536, 552, 599
TspRI CASTG 1 cut(s) 773
XapI RAATTY 1 cut(s) 338
XceI RCATGY 5 cut(s) 100, 185, 324, 392, 415
XhoI CTCGAG 1 cut(s) 296
XspI CTAG 2 cut(s) 137, 546
ZraI GACGTC 1 cut(s) 574
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.