Prupe.7G056900_v2.0.a1

Ganglioside-induced differentiation-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Reverse (-)
9627742 .. 9628353
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G056900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 525 bp
ATGGAGGGCAAGGAAGAGGATGTCCACACAGAGAAAGAGAAAGAAAGAGTTTTCATGTCTTCTCCTCTTGTTCCGATGAAACACGACAAGAAGAAGCCGTTCGCAGGGTTGTACGTGCACACCGGAGTTCAAAGGTGCGAGAAATTCCCCGGAATCTCCGCCGTCCGATCAATCTACGATGCGATCCCGATCAACGTCAAGCGCAATCTCGAAGCTGTGTATTTCCTCCACCCTGGCCTGCAAGCCCGCCTCTTCTTAGCCACCTTCGGCCGCTTCCTTTTCACCGGAGGGTCCCAGCTTCACGACAAGAAGAAGCCGTTCGCAGGGTTGTACGTGCACACCGGAGTTCAAAGGTGCGAGAAATTCCCCGGAATCTCCGCCGTCCGATCAATCTACGATGCGATCCCGATCAACGTCAAGCGCAATCTCGAAGCTGTGTATTTCCTCCACCCTGGCCTGCAAGCCCGCCTCTTCTTAGCCACCTTCGGCCGCTTCCTTTTCACCGGAGGGTGTATGGGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO_2

Protein Analysis

175

Amino Acids

19.62

Weight (kDa)

9.68

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 159, 247, 271, 378, 466, 490
AclWI GGATC 2 cut(s) 178, 397
AcoI YGGCCR 2 cut(s) 268, 487
AcsI RAATTY 2 cut(s) 143, 362
AfaI GTAC 2 cut(s) 113, 332
AfiI CCNNNNNNNGG 2 cut(s) 104, 323
AgsI TTSAA 2 cut(s) 131, 350
AjnI CCWGG 2 cut(s) 232, 451
AluBI AGCT 4 cut(s) 215, 298, 434, 522
AluI AGCT 4 cut(s) 215, 298, 434, 522
Alw21I GWGCWC 2 cut(s) 120, 339
Alw44I GTGCAC 2 cut(s) 116, 335
AlwI GGATC 2 cut(s) 178, 397
AoxI GGCC 4 cut(s) 235, 268, 454, 487
ApaLI GTGCAC 2 cut(s) 116, 335
ApoI RAATTY 2 cut(s) 143, 362
Asp700I GAANNNNTTC 2 cut(s) 98, 317
AspLEI GCGC 2 cut(s) 204, 423
AspS9I GGNCC 1 cut(s) 291
AsuC2I CCSGG 2 cut(s) 150, 369
AsuHPI GGTGA 2 cut(s) 274, 493
AvaII GGWCC 1 cut(s) 291
BaeGI GKGCMC 2 cut(s) 120, 339
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 2 cut(s) 120, 339
BceAI ACGGC 4 cut(s) 82, 146, 301, 365
BciT130I CCWGG 2 cut(s) 234, 453
BcnI CCSGG 2 cut(s) 150, 369
BisI GCNGC 2 cut(s) 271, 490
BlsI GCNGC 2 cut(s) 272, 491
Bme1390I CCNGG 4 cut(s) 150, 234, 369, 453
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 2 cut(s) 292, 293
BmrFI CCNGG 4 cut(s) 150, 234, 369, 453
BmsI GCATC 2 cut(s) 169, 388
BpiI GAAGAC 1 cut(s) 51
BpuMI CCSGG 2 cut(s) 150, 369
BsaAI YACGTR 2 cut(s) 115, 334
BsaBI GATNNNNATC 2 cut(s) 188, 407
BsaJI CCNNGG 4 cut(s) 148, 232, 367, 451
BsaWI WCCGGW 4 cut(s) 122, 284, 341, 503
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 323
Bse8I GATNNNNATC 2 cut(s) 188, 407
BseBI CCWGG 2 cut(s) 234, 453
BseDI CCNNGG 4 cut(s) 148, 232, 367, 451
BseGI GGATG 1 cut(s) 25
BseJI GATNNNNATC 2 cut(s) 188, 407
BseLI CCNNNNNNNGG 2 cut(s) 104, 323
BseRI GAGGAG 1 cut(s) 54
BseSI GKGCMC 2 cut(s) 120, 339
BseX3I CGGCCG 2 cut(s) 268, 487
BseYI CCCAGC 1 cut(s) 294
Bsh1285I CGRYCG 2 cut(s) 271, 490
BshFI GGCC 4 cut(s) 237, 270, 456, 489
BsiEI CGRYCG 2 cut(s) 271, 490
BsiHKAI GWGCWC 2 cut(s) 120, 339
BsiSI CCGG 6 cut(s) 123, 150, 285, 342, 369, 504
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 2 cut(s) 104, 323
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 4 cut(s) 237, 270, 456, 489
Bsp1286I GDGCHC 2 cut(s) 120, 339
Bsp143I GATC 6 cut(s) 167, 183, 189, 386, 402, 408
BspACI CCGC 6 cut(s) 159, 247, 271, 378, 466, 490
BspANI GGCC 4 cut(s) 237, 270, 456, 489
BspLI GGNNCC 2 cut(s) 292, 293
BspPI GGATC 2 cut(s) 178, 397
BssECI CCNNGG 4 cut(s) 148, 232, 367, 451
BssMI GATC 6 cut(s) 167, 183, 189, 386, 402, 408
Bst2UI CCWGG 2 cut(s) 234, 453
Bst6I CTCTTC 3 cut(s) 9, 257, 476
BstBAI YACGTR 2 cut(s) 115, 334
BstC8I GCNNGC 6 cut(s) 239, 243, 247, 458, 462, 466
BstDEI CTNAG 2 cut(s) 256, 475
BstF5I GGATG 1 cut(s) 25
BstHHI GCGC 2 cut(s) 204, 423
BstKTI GATC 6 cut(s) 170, 186, 192, 389, 405, 411
BstMBI GATC 6 cut(s) 167, 183, 189, 386, 402, 408
BstMCI CGRYCG 2 cut(s) 271, 490
BstNI CCWGG 2 cut(s) 234, 453
BstSCI CCNGG 4 cut(s) 148, 232, 367, 451
BstSLI GKGCMC 2 cut(s) 120, 339
BstV2I GAAGAC 1 cut(s) 51
BstZI CGGCCG 2 cut(s) 268, 487
BsuRI GGCC 4 cut(s) 237, 270, 456, 489
BtsCI GGATG 1 cut(s) 25
Cac8I GCNNGC 6 cut(s) 239, 243, 247, 458, 462, 466
CfoI GCGC 2 cut(s) 204, 423
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 2 cut(s) 112, 331
CviAII CATG 1 cut(s) 55
CviQI GTAC 2 cut(s) 112, 331
DdeI CTNAG 2 cut(s) 256, 475
DpnI GATC 6 cut(s) 169, 185, 191, 388, 404, 410
DpnII GATC 6 cut(s) 167, 183, 189, 386, 402, 408
EaeI YGGCCR 2 cut(s) 268, 487
EagI CGGCCG 2 cut(s) 268, 487
Eam1104I CTCTTC 3 cut(s) 9, 257, 476
EarI CTCTTC 3 cut(s) 9, 257, 476
EciI GGCGGA 2 cut(s) 148, 367
EclXI CGGCCG 2 cut(s) 268, 487
Eco47I GGWCC 1 cut(s) 291
Eco52I CGGCCG 2 cut(s) 268, 487
EcoO109I RGGNCCY 1 cut(s) 291
EcoRII CCWGG 2 cut(s) 232, 451
FaeI CATG 1 cut(s) 58
FaiI YATR 2 cut(s) 56, 515
FaqI GGGAC 1 cut(s) 277
FatI CATG 1 cut(s) 54
FauI CCCGC 2 cut(s) 254, 473
Fnu4HI GCNGC 2 cut(s) 271, 490
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 2 cut(s) 271, 490
GlaI GCGC 2 cut(s) 203, 422
GluI GCNGC 2 cut(s) 271, 490
GsaI CCCAGC 1 cut(s) 298
HaeIII GGCC 4 cut(s) 237, 270, 456, 489
HapII CCGG 6 cut(s) 123, 150, 285, 342, 369, 504
HhaI GCGC 2 cut(s) 204, 423
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 2 cut(s) 202, 421
HinP1I GCGC 2 cut(s) 202, 421
HinfI GANTC 2 cut(s) 153, 372
HpaII CCGG 6 cut(s) 123, 150, 285, 342, 369, 504
HphI GGTGA 2 cut(s) 274, 493
Hpy166II GTNNAC 3 cut(s) 25, 118, 337
Hpy188I TCNGA 3 cut(s) 75, 167, 386
Hpy188III TCNNGA 5 cut(s) 187, 209, 302, 406, 428
Hpy8I GTNNAC 3 cut(s) 25, 118, 337
HpyAV CCTTC 2 cut(s) 274, 493
HpyCH4IV ACGT 4 cut(s) 114, 195, 333, 414
HpyCH4V TGCA 4 cut(s) 118, 241, 337, 460
HpyF3I CTNAG 2 cut(s) 256, 475
HpySE526I ACGT 4 cut(s) 114, 195, 333, 414
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 2 cut(s) 202, 421
KflI GGGWCCC 1 cut(s) 291
Kzo9I GATC 6 cut(s) 167, 183, 189, 386, 402, 408
LweI GCATC 2 cut(s) 169, 388
MaeII ACGT 4 cut(s) 114, 195, 333, 414
MalI GATC 6 cut(s) 169, 185, 191, 388, 404, 410
MboI GATC 6 cut(s) 167, 183, 189, 386, 402, 408
MboII GAAGA 6 cut(s) 26, 51, 103, 244, 322, 463
MhlI GDGCHC 2 cut(s) 120, 339
MluCI AATT 2 cut(s) 143, 362
MnlI CCTC 8 cut(s) 10, 75, 236, 260, 281, 455, 479, 500
MroXI GAANNNNTTC 2 cut(s) 98, 317
MspI CCGG 6 cut(s) 123, 150, 285, 342, 369, 504
MspR9I CCNGG 4 cut(s) 150, 234, 369, 453
MvaI CCWGG 2 cut(s) 234, 453
NciI CCSGG 2 cut(s) 150, 369
NdeII GATC 6 cut(s) 167, 183, 189, 386, 402, 408
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 2 cut(s) 292, 293
PdmI GAANNNNTTC 2 cut(s) 98, 317
PfeI GAWTC 2 cut(s) 153, 372
PkrI GCNGC 2 cut(s) 272, 491
Ppu21I YACGTR 2 cut(s) 115, 334
PpuMI RGGWCCY 1 cut(s) 291
Psp5II RGGWCCY 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 232, 451
PspFI CCCAGC 1 cut(s) 294
PspGI CCWGG 2 cut(s) 232, 451
PspN4I GGNNCC 2 cut(s) 292, 293
PspPI GGNCC 1 cut(s) 291
PspPPI RGGWCCY 1 cut(s) 291
RsaI GTAC 2 cut(s) 113, 332
RsaNI GTAC 2 cut(s) 112, 331
SatI GCNGC 2 cut(s) 271, 490
Sau3AI GATC 6 cut(s) 167, 183, 189, 386, 402, 408
Sau96I GGNCC 1 cut(s) 291
ScrFI CCNGG 4 cut(s) 150, 234, 369, 453
SduI GDGCHC 2 cut(s) 120, 339
SfaNI GCATC 2 cut(s) 169, 388
SinI GGWCC 1 cut(s) 291
Sse9I AATT 2 cut(s) 143, 362
SsiI CCGC 6 cut(s) 159, 247, 271, 378, 466, 490
StyD4I CCNGG 4 cut(s) 148, 232, 367, 451
TaiI ACGT 4 cut(s) 117, 198, 336, 417
TaqI TCGA 2 cut(s) 210, 429
TasI AATT 2 cut(s) 143, 362
TauI GCSGC 2 cut(s) 273, 492
TfiI GAWTC 2 cut(s) 153, 372
TspDTI ATGAA 2 cut(s) 43, 92
VneI GTGCAC 2 cut(s) 116, 335
VpaK11BI GGWCC 1 cut(s) 291
XapI RAATTY 2 cut(s) 143, 362
XmnI GAANNNNTTC 2 cut(s) 98, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.