Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

9656981 .. 9657526

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G057300.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAAACTTCAAACCCTCACGGATGCATCCAAGAGAGGAACACCAAGCGTGTGGTTGTGTACGTTGGAGGTGGAGCGTACAACGAGAAAATCAAAATCCCACAAAATAAACCATTTGTGACGTTGTATGGATTGCCAAAAAATATGCCAACTTTGATGTCTCATGGCACGGCTCAGAAGTATGGGACTGTCTACAGTGGTACATTGACTGTGGAATCTGACTATTTTAGGGCTGCTAGCATTATTGTTACGTTAGAGAAATGTTATATTATTCTAATGATGGTAATGTATGTATCATGGTCTCATGGAGTGGTTTACTATAATTTTGCAGAATTCGGCACCGGAGCCGGATGGGATGCGCAGGCAGTTGCATTGCAGATCTCCGGGGACAAGGCAGCGTTCTACAATTGCAAGTTTATTGGATTTCAGGACACTCTTTATGATTACAAGGGCTTGCATTTCTTCAAGGACTGTTACATTCCTTCAAGGACTGCTACATTCAAGGAACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

171

Amino Acids

19.14

Weight (kDa)

8.58

Isoelectric Point (pI)

22.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	360
AccB1I	GGYRCC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	3 cut(s)	62, 80, 202
AgsI	TTSAA	4 cut(s)	12, 466, 486, 502
Alw26I	GTCTC	2 cut(s)	165, 306
ApeKI	GCWGC	2 cut(s)	233, 395
ApoI	RAATTY	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	361
AsuC2I	CCSGG	1 cut(s)	385
AsuNHI	GCTAGC	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	220, 407
BccI	CCATC	2 cut(s)	274, 345
BceAI	ACGGC	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	165, 306
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	193
BglII	AGATCT	1 cut(s)	378
BisI	GCNGC	2 cut(s)	234, 396
BlsI	GCNGC	2 cut(s)	235, 397
Bme1390I	CCNGG	1 cut(s)	385
BmiI	GGNNCC	3 cut(s)	340, 346, 507
BmrFI	CCNGG	1 cut(s)	385
BmsI	GCATC	3 cut(s)	14, 36, 346
BmtI	GCTAGC	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	385
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	384
BsaWI	WCCGGW	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	4 cut(s)	27, 29, 356, 361
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	220, 407
BshNI	GGYRCC	1 cut(s)	338
BsiSI	CCGG	3 cut(s)	342, 348, 384
BslFI	GGGAC	2 cut(s)	199, 401
BsmAI	GTCTC	2 cut(s)	165, 306
BsmFI	GGGAC	2 cut(s)	199, 401
Bso31I	GGTCTC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	378
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	3 cut(s)	340, 346, 507
BspOI	GCTAGC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	1 cut(s)	378
Bst4CI	ACNGT	5 cut(s)	190, 197, 211, 473, 510
BstC8I	GCNNGC	3 cut(s)	238, 363, 455
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	4 cut(s)	27, 29, 356, 361
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	1 cut(s)	381
BstMAI	GTCTC	2 cut(s)	165, 306
BstMBI	GATC	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	383
BstSFI	CTRYAG	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	220, 407
BstX2I	RGATCY	1 cut(s)	378
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	378
BtsCI	GGATG	4 cut(s)	27, 29, 356, 361
BtsIMutI	CAGTG	1 cut(s)	202
Cac8I	GCNNGC	3 cut(s)	238, 363, 455
CfoI	GCGC	1 cut(s)	361
Csp6I	GTAC	3 cut(s)	61, 79, 201
CviAII	CATG	3 cut(s)	164, 297, 305
CviJI	RGCY	4 cut(s)	173, 233, 347, 453
CviKI_1	RGCY	4 cut(s)	173, 233, 347, 453
CviQI	GTAC	3 cut(s)	61, 79, 201
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	306
EcoRI	GAATTC	1 cut(s)	332
EcoT22I	ATGCAT	1 cut(s)	29
FaeI	CATG	3 cut(s)	167, 300, 308
FaqI	GGGAC	2 cut(s)	199, 401
FatI	CATG	3 cut(s)	163, 296, 304
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	234, 396
FokI	GGATG	4 cut(s)	14, 36, 363, 368
Fsp4HI	GCNGC	2 cut(s)	234, 396
FspBI	CTAG	1 cut(s)	237
FspI	TGCGCA	1 cut(s)	360
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	2 cut(s)	234, 396
HapII	CCGG	3 cut(s)	342, 348, 384
HhaI	GCGC	1 cut(s)	361
Hin1II	CATG	3 cut(s)	167, 300, 308
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	3 cut(s)	342, 348, 384
Hpy166II	GTNNAC	3 cut(s)	61, 193, 316
Hpy188I	TCNGA	2 cut(s)	177, 220
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	3 cut(s)	61, 193, 316
HpyAV	CCTTC	1 cut(s)	492
HpyCH4III	ACNGT	5 cut(s)	190, 197, 211, 473, 510
HpyCH4IV	ACGT	3 cut(s)	63, 122, 251
HpyCH4V	TGCA	6 cut(s)	27, 329, 371, 376, 411, 457
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	3 cut(s)	63, 122, 251
Hsp92II	CATG	3 cut(s)	167, 300, 308
HspAI	GCGC	1 cut(s)	359
Kzo9I	GATC	1 cut(s)	378
LmnI	GCTCC	2 cut(s)	74, 344
LpnPI	CCDG	5 cut(s)	347, 355, 361, 397, 413
Lsp1109I	GCAGC	2 cut(s)	220, 407
LweI	GCATC	3 cut(s)	14, 36, 346
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	3 cut(s)	63, 122, 251
MaeIII	GTNAC	3 cut(s)	118, 247, 473
MalI	GATC	1 cut(s)	380
MboI	GATC	1 cut(s)	378
MboII	GAAGA	1 cut(s)	454
MfeI	CAATTG	1 cut(s)	406
MflI	RGATCY	1 cut(s)	378
MluCI	AATT	3 cut(s)	322, 332, 406
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	3 cut(s)	27, 30, 62
Mph1103I	ATGCAT	1 cut(s)	29
MspI	CCGG	3 cut(s)	342, 348, 384
MspR9I	CCNGG	1 cut(s)	385
MunI	CAATTG	1 cut(s)	406
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	1 cut(s)	378
NheI	GCTAGC	1 cut(s)	236
NlaIII	CATG	3 cut(s)	167, 300, 308
NlaIV	GGNNCC	3 cut(s)	340, 346, 507
NmuCI	GTSAC	1 cut(s)	118
NsbI	TGCGCA	1 cut(s)	360
NsiI	ATGCAT	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	235, 397
PspN4I	GGNNCC	3 cut(s)	340, 346, 507
PsuI	RGATCY	1 cut(s)	378
RsaI	GTAC	3 cut(s)	62, 80, 202
RsaNI	GTAC	3 cut(s)	61, 79, 201
SatI	GCNGC	2 cut(s)	234, 396
Sau3AI	GATC	1 cut(s)	378
ScrFI	CCNGG	1 cut(s)	385
SetI	ASST	4 cut(s)	66, 73, 125, 254
SfaNI	GCATC	3 cut(s)	14, 36, 346
SfcI	CTRYAG	1 cut(s)	193
Sse9I	AATT	3 cut(s)	322, 332, 406
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	383
TaaI	ACNGT	5 cut(s)	190, 197, 211, 473, 510
TaiI	ACGT	3 cut(s)	66, 125, 254
TasI	AATT	3 cut(s)	322, 332, 406
TfiI	GAWTC	1 cut(s)	215
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	233, 395
Tsp45I	GTSAC	1 cut(s)	118
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	202
XapI	RAATTY	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	1 cut(s)	237
Zsp2I	ATGCAT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.