Prupe.7G057500_v2.0.a1

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
9681366 .. 9682927
1562 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G057500.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 348 bp
ATGCTTGTCCAGCTAGCAGCATGGGTGCGATGTGATCTTTATCAAACAGATGATGGATTCTACTATTATGGCGCCGTTAGAGACGACCACAATGCGCATCTCAATATCACGCATCCTTATTATCACACGCCTCTCAGTTTCGCGCATATAAATCCACCAGATCCATCTATCTTCGATTTTGGTATATTTCTCTACGCTCTTCAGTCTAACACGACCAGGTCAACGTCTATTCCACGAAAAATGTTTCATAGTTTCCGGTGGGGATTGCGCAATCTGAGTTCTTTTGGTTCAAACTTGAGACTAGTCTTTATGGGGTGGAAATCTTTTTTACGATTTTGGTATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans Pkinase_Tyr cNMP_binding

Protein Analysis

116

Amino Acids

13.65

Weight (kDa)

9.2

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 96, 269
AccB1I GGYRCC 1 cut(s) 71
AccII CGCG 1 cut(s) 143
AclWI GGATC 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 72
AgsI TTSAA 1 cut(s) 291
AhlI ACTAGT 1 cut(s) 301
AjnI CCWGG 1 cut(s) 215
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 75, 292
AlwI GGATC 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 17
AspLEI GCGC 4 cut(s) 74, 97, 145, 270
AsuNHI GCTAGC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 29
BccI CCATC 2 cut(s) 47, 172
BceAI ACGGC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 75, 292
BcuI ACTAGT 1 cut(s) 301
BfaI CTAG 2 cut(s) 14, 302
BfoI RGCGCY 1 cut(s) 75
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 217
BmsI GCATC 2 cut(s) 106, 121
BmtI GCTAGC 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 316
BsaBI GATNNNNATC 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 255
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 39
BseMII CTCAG 2 cut(s) 148, 266
BseXI GCAGC 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 256
BsmAI GTCTC 2 cut(s) 75, 292
BsmBI CGTCTC 1 cut(s) 75
Bsp143I GATC 2 cut(s) 34, 160
BspCNI CTCAG 2 cut(s) 147, 267
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 73
BspOI GCTAGC 1 cut(s) 17
BspPI GGATC 1 cut(s) 155
BspQI GCTCTTC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 71
BssMI GATC 2 cut(s) 34, 160
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 204
BstACI GRCGYC 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 2 cut(s) 134, 275
BstF5I GGATG 1 cut(s) 112
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 4 cut(s) 74, 97, 145, 270
BstKTI GATC 2 cut(s) 37, 163
BstMAI GTCTC 2 cut(s) 75, 292
BstMBI GATC 2 cut(s) 34, 160
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 215
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BtgZI GCGATG 1 cut(s) 43
BtsCI GGATG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 15
CfoI GCGC 4 cut(s) 74, 97, 145, 270
CsiI ACCWGGT 1 cut(s) 215
CviAII CATG 1 cut(s) 21
CviJI RGCY 1 cut(s) 13
CviKI_1 RGCY 1 cut(s) 13
DdeI CTNAG 2 cut(s) 134, 275
DinI GGCGCC 1 cut(s) 73
DpnI GATC 2 cut(s) 36, 162
DpnII GATC 2 cut(s) 34, 160
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 215
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 1 cut(s) 24
FaiI YATR 8 cut(s) 22, 69, 147, 149, 185, 249, 311, 346
FatI CATG 1 cut(s) 20
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 18
FspAI RTGCGCAY 1 cut(s) 96
FspBI CTAG 2 cut(s) 14, 302
FspI TGCGCA 2 cut(s) 96, 269
GlaI GCGC 4 cut(s) 73, 96, 144, 269
GluI GCNGC 1 cut(s) 18
HaeII RGCGCY 1 cut(s) 75
HapII CCGG 1 cut(s) 256
HhaI GCGC 4 cut(s) 74, 97, 145, 270
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 1 cut(s) 24
Hin6I GCGC 4 cut(s) 72, 95, 143, 268
HinP1I GCGC 4 cut(s) 72, 95, 143, 268
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 1 cut(s) 57
HpaII CCGG 1 cut(s) 256
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 222
HpyCH4IV ACGT 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 134, 275
HpySE526I ACGT 1 cut(s) 224
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 1 cut(s) 24
HspAI GCGC 4 cut(s) 72, 95, 143, 268
KasI GGCGCC 1 cut(s) 71
Kzo9I GATC 2 cut(s) 34, 160
LguI GCTCTTC 1 cut(s) 204
LpnPI CCDG 5 cut(s) 23, 171, 202, 229, 269
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 2 cut(s) 106, 121
MabI ACCWGGT 1 cut(s) 215
MaeI CTAG 2 cut(s) 14, 302
MaeII ACGT 1 cut(s) 224
MalI GATC 2 cut(s) 36, 162
MboI GATC 2 cut(s) 34, 160
MboII GAAGA 2 cut(s) 163, 191
MflI RGATCY 1 cut(s) 160
Mly113I GGCGCC 1 cut(s) 72
MnlI CCTC 1 cut(s) 141
MspI CCGG 1 cut(s) 256
MspR9I CCNGG 1 cut(s) 217
MvaI CCWGG 1 cut(s) 217
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 10
NarI GGCGCC 1 cut(s) 72
NdeII GATC 2 cut(s) 34, 160
NheI GCTAGC 1 cut(s) 13
NlaIII CATG 1 cut(s) 24
NlaIV GGNNCC 1 cut(s) 73
NsbI TGCGCA 2 cut(s) 96, 269
PciSI GCTCTTC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 57
PflFI GACNNNGTC 1 cut(s) 217
PkrI GCNGC 1 cut(s) 19
PluTI GGCGCC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 73
PsuI RGATCY 1 cut(s) 160
PsyI GACNNNGTC 1 cut(s) 217
SapI GCTCTTC 1 cut(s) 204
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 2 cut(s) 34, 160
ScrFI CCNGG 1 cut(s) 217
SetI ASST 3 cut(s) 15, 221, 227
SexAI ACCWGGT 1 cut(s) 215
SfaNI GCATC 2 cut(s) 106, 121
SfoI GGCGCC 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
SpeI ACTAGT 1 cut(s) 301
SspDI GGCGCC 1 cut(s) 71
SspMI CTAG 2 cut(s) 14, 302
StyD4I CCNGG 1 cut(s) 215
TaiI ACGT 1 cut(s) 227
TaqI TCGA 1 cut(s) 174
TfiI GAWTC 1 cut(s) 57
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 236
Tth111I GACNNNGTC 1 cut(s) 217
XspI CTAG 2 cut(s) 14, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.