Prupe.7G060800_v2.0.a1

Belongs to the TCTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
10000745 .. 10004400
3656 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G060800.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 546 bp
ATGGCTATTCCCCGTTCTTTAAAATTGATCCGCCTCTTAAAAAAAGCTTGGAGCACCCTTAAACAATCCAACGCTAGGAGAAACAAAAATCAAAAGAATAGAGCAACAGCAAGTTTACCAAGTGTACTGTCCCAAATTCAAAAGCTTGATACAATCTATGTCGAAACCGCGGCAGATATGGAGGTGGTGCAAAAACTTATCAATGCCCAGGAACCGTGGAAGGGCACCCACATTGTTGTGAAGACCAAACAAGATGCCACAACTGCAACTATTAAACAAAAGGCCAAAGAGCTTGACTTAGAAGTCATTGAAATTGCTGCGTCGCTCTCTCCTCTCAAATCCCTAGTAAAGCTTGTTGGGGCGATCCGAGAGAAAGACTCTGCTGCAAACATGTTGGTTTACCAAGACCTCCTCACTGTACTGAAAGTTCTTTGGAATCTCGGGGCGGAGACACTAGTGGGTAGAACTCTGACTCAAACAACGACAACGCCGGAACAAGCAACTGTGACTAGTAATTTAATTATTAGTGGCTGTTATGTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCTP

Protein Analysis

182

Amino Acids

19.95

Weight (kDa)

9.8

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 224
AccII CGCG 1 cut(s) 170
AciI CCGC 4 cut(s) 31, 168, 170, 446
AclWI GGATC 2 cut(s) 22, 358
AcsI RAATTY 1 cut(s) 135
AfaI GTAC 2 cut(s) 126, 420
AfiI CCNNNNNNNGG 2 cut(s) 75, 221
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 2 cut(s) 140, 311
AhlI ACTAGT 2 cut(s) 454, 509
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 4 cut(s) 47, 145, 292, 352
AluI AGCT 4 cut(s) 47, 145, 292, 352
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 443
AlwI GGATC 2 cut(s) 22, 358
Ama87I CYCGRG 1 cut(s) 440
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 2 cut(s) 317, 383
ApoI RAATTY 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 440
BaeGI GKGCMC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 2 cut(s) 304, 370
BciT130I CCWGG 1 cut(s) 209
BcoDI GTCTC 1 cut(s) 443
BcuI ACTAGT 2 cut(s) 454, 509
BfaI CTAG 4 cut(s) 75, 344, 455, 510
BisI GCNGC 3 cut(s) 171, 318, 384
BlsI GCNGC 3 cut(s) 172, 319, 385
Bme1390I CCNGG 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 440
BmiI GGNNCC 2 cut(s) 213, 226
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 248
BplI GAGNNNNNCTC 2 cut(s) 362, 394
BsaJI CCNNGG 3 cut(s) 168, 207, 215
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 221
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 3 cut(s) 168, 207, 215
BseLI CCNNNNNNNGG 2 cut(s) 75, 221
BseRI GAGGAG 2 cut(s) 321, 401
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 2 cut(s) 304, 370
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 440
BsiSI CCGG 1 cut(s) 491
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 2 cut(s) 75, 221
BsmAI GTCTC 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 1 cut(s) 284
BsoBI CYCGRG 1 cut(s) 440
Bsp1286I GDGCHC 2 cut(s) 56, 227
Bsp143I GATC 2 cut(s) 27, 363
BspACI CCGC 4 cut(s) 31, 168, 170, 446
BspANI GGCC 1 cut(s) 284
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 2 cut(s) 213, 226
BspPI GGATC 2 cut(s) 22, 358
BspT107I GGYRCC 1 cut(s) 224
BssECI CCNNGG 3 cut(s) 168, 207, 215
BssMI GATC 2 cut(s) 27, 363
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 4 cut(s) 129, 216, 418, 505
BstDEI CTNAG 1 cut(s) 298
BstDSI CCRYGG 2 cut(s) 168, 215
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 2 cut(s) 30, 366
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 2 cut(s) 27, 363
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 227
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 304, 370
BstV2I GAAGAC 1 cut(s) 248
BsuRI GGCC 1 cut(s) 284
BtgI CCRYGG 2 cut(s) 168, 215
BtsIMutI CAGTG 1 cut(s) 414
Cfr42I CCGCGG 1 cut(s) 171
CseI GACGC 1 cut(s) 309
Csp6I GTAC 2 cut(s) 125, 419
CviAII CATG 1 cut(s) 391
CviJI RGCY 7 cut(s) 5, 47, 145, 284, 292, 352, 531
CviKI_1 RGCY 7 cut(s) 5, 47, 145, 284, 292, 352, 531
CviQI GTAC 2 cut(s) 125, 419
DdeI CTNAG 1 cut(s) 298
DpnI GATC 2 cut(s) 29, 365
DpnII GATC 2 cut(s) 27, 363
DraI TTTAAA 1 cut(s) 21
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
EciI GGCGGA 2 cut(s) 20, 461
Eco88I CYCGRG 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 394
FaiI YATR 4 cut(s) 159, 179, 392, 537
FaqI GGGAC 1 cut(s) 115
FatI CATG 1 cut(s) 390
Fnu4HI GCNGC 3 cut(s) 171, 318, 384
Fsp4HI GCNGC 3 cut(s) 171, 318, 384
FspBI CTAG 4 cut(s) 75, 344, 455, 510
GluI GCNGC 3 cut(s) 171, 318, 384
HaeIII GGCC 1 cut(s) 284
HapII CCGG 1 cut(s) 491
HgaI GACGC 1 cut(s) 309
Hin1II CATG 1 cut(s) 394
HindIII AAGCTT 3 cut(s) 45, 143, 350
HinfI GANTC 3 cut(s) 377, 436, 472
HpaII CCGG 1 cut(s) 491
Hpy166II GTNNAC 3 cut(s) 116, 125, 400
Hpy188I TCNGA 2 cut(s) 368, 471
Hpy8I GTNNAC 3 cut(s) 116, 125, 400
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 4 cut(s) 129, 216, 418, 505
HpyCH4V TGCA 3 cut(s) 190, 266, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 298
Hsp92II CATG 1 cut(s) 394
KspI CCGCGG 1 cut(s) 171
Kzo9I GATC 2 cut(s) 27, 363
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 3 cut(s) 194, 221, 504
Lsp1109I GCAGC 2 cut(s) 304, 370
LweI GCATC 1 cut(s) 244
MaeI CTAG 4 cut(s) 75, 344, 455, 510
MaeIII GTNAC 1 cut(s) 505
MalI GATC 2 cut(s) 29, 365
MboI GATC 2 cut(s) 27, 363
MboII GAAGA 1 cut(s) 253
MhlI GDGCHC 2 cut(s) 56, 227
MluCI AATT 5 cut(s) 23, 135, 312, 514, 519
MlyI GAGTC 2 cut(s) 371, 466
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 5 cut(s) 44, 175, 342, 419, 422
MseI TTAA 5 cut(s) 20, 38, 60, 273, 518
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 491
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeII GATC 2 cut(s) 27, 363
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 2 cut(s) 213, 226
NmuCI GTSAC 1 cut(s) 505
NspI RCATGY 1 cut(s) 394
PciI ACATGT 1 cut(s) 390
PfeI GAWTC 1 cut(s) 436
PkrI GCNGC 3 cut(s) 172, 319, 385
PleI GAGTC 2 cut(s) 371, 466
PpsI GAGTC 2 cut(s) 371, 466
PscI ACATGT 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 213, 226
PsrI GAACNNNNNNTAC 2 cut(s) 411, 443
RsaI GTAC 2 cut(s) 126, 420
RsaNI GTAC 2 cut(s) 125, 419
RseI CAYNNNNRTG 1 cut(s) 236
SacII CCGCGG 1 cut(s) 171
SaqAI TTAA 5 cut(s) 20, 38, 60, 273, 518
SatI GCNGC 3 cut(s) 171, 318, 384
Sau3AI GATC 2 cut(s) 27, 363
SchI GAGTC 2 cut(s) 371, 466
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 2 cut(s) 56, 227
SetI ASST 6 cut(s) 49, 147, 186, 294, 354, 411
SfaNI GCATC 1 cut(s) 244
Sfr303I CCGCGG 1 cut(s) 171
SgrBI CCGCGG 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 236
SpeI ACTAGT 2 cut(s) 454, 509
Sse9I AATT 5 cut(s) 23, 135, 312, 514, 519
SsiI CCGC 4 cut(s) 31, 168, 170, 446
SspMI CTAG 4 cut(s) 75, 344, 455, 510
StyD4I CCNGG 1 cut(s) 207
TaaI ACNGT 4 cut(s) 129, 216, 418, 505
TaqI TCGA 1 cut(s) 162
TasI AATT 5 cut(s) 23, 135, 312, 514, 519
TatI WGTACW 2 cut(s) 124, 418
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 1 cut(s) 436
Tru1I TTAA 5 cut(s) 20, 38, 60, 273, 518
Tru9I TTAA 5 cut(s) 20, 38, 60, 273, 518
TscAI CASTG 1 cut(s) 421
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 2 cut(s) 317, 383
Tsp45I GTSAC 1 cut(s) 505
TspRI CASTG 1 cut(s) 421
XapI RAATTY 1 cut(s) 135
XceI RCATGY 1 cut(s) 394
XspI CTAG 4 cut(s) 75, 344, 455, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.