Prupe.7G061800_v2.0.a1

TRAM domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Reverse (-)
10088267 .. 10090925
2659 bp
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UTR
Exon/CDS
Intron
Prupe.7G061800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 237 bp
ATGGTCGGGGCTGTCTTGCAACGGTGGAGAGTACCCGAGGAGGAACATGCAGACACACTGAGCCTTGTAAAGGCTGTTGGTTATGATATGGCTTACATGTTTGCATATAGCATGAGGGAGAAAACTCATGCACATAGAAACTATGTGGATGATGTTCCAGAGAAAGTGAAGCAGAGGAGGCTGACCGAACTTATCGAGGCTTTCCGTGAGAGCACAGGTCAGTGTTATGGTAATTGA

Protein Analysis

79

Amino Acids

9.12

Weight (kDa)

6.27

Isoelectric Point (pI)

53.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 70
AflIII ACRYGT 1 cut(s) 96
Alw21I GWGCWC 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 215
BmeT110I CYCGRG 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 50
BseRI GAGGAG 2 cut(s) 53, 190
BsiHKAI GWGCWC 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 59
BstENI CCTNNNNNAGG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNSI RCATGY 2 cut(s) 50, 100
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 2 cut(s) 56, 227
Csp6I GTAC 1 cut(s) 32
CviAII CATG 4 cut(s) 47, 97, 112, 128
CviJI RGCY 6 cut(s) 11, 63, 74, 92, 181, 200
CviKI_1 RGCY 6 cut(s) 11, 63, 74, 92, 181, 200
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 35
EcoNI CCTNNNNNAGG 1 cut(s) 68
FaeI CATG 4 cut(s) 50, 100, 115, 131
FatI CATG 4 cut(s) 46, 96, 111, 127
FokI GGATG 1 cut(s) 161
Hin1II CATG 4 cut(s) 50, 100, 115, 131
Hpy188III TCNNGA 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4V TGCA 4 cut(s) 19, 50, 104, 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 1 cut(s) 59
Hsp92II CATG 4 cut(s) 50, 100, 115, 131
LpnPI CCDG 2 cut(s) 171, 201
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 1 cut(s) 232
MnlI CCTC 6 cut(s) 31, 34, 108, 168, 171, 190
MwoI GCNNNNNNNGC 1 cut(s) 178
NlaIII CATG 4 cut(s) 50, 100, 115, 131
NspI RCATGY 2 cut(s) 50, 100
PciI ACATGT 1 cut(s) 96
PscI ACATGT 1 cut(s) 96
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SduI GDGCHC 1 cut(s) 215
SetI ASST 1 cut(s) 220
Sse9I AATT 1 cut(s) 232
TaaI ACNGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 195
TaqII GACCGA 1 cut(s) 200
TasI AATT 1 cut(s) 232
TscAI CASTG 2 cut(s) 63, 227
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 2 cut(s) 63, 227
XagI CCTNNNNNAGG 1 cut(s) 68
XceI RCATGY 2 cut(s) 50, 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.