Prupe.7G068300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Reverse (-)
10654436 .. 10654642
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G068300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 207 bp
ATGGCACGGTTTGGCACATCTTCAGCTAGAATTCTTATGGTCATGGTTGCTGCATTATTTTATGTGACCAAAACTATGGCACAGAATACCGCCACACCACCTGCCCCGTTACCGGTGACCGGAGCCGGGTTTGCTTCTCCGGTTTCCGTGGCGTTGATCTGTTCTTCTATGTTGGTCTCTCTTACAGCTGCTTTTGCTTTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

6.96

Weight (kDa)

9.5

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 109
Acc36I ACCTGC 1 cut(s) 109
AciI CCGC 1 cut(s) 90
AcsI RAATTY 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 6
AfiI CCNNNNNNNGG 3 cut(s) 112, 119, 126
AgeI ACCGGT 1 cut(s) 112
AluBI AGCT 2 cut(s) 26, 188
AluI AGCT 2 cut(s) 26, 188
Alw26I GTCTC 1 cut(s) 181
ApeKI GCWGC 2 cut(s) 50, 188
ApoI RAATTY 1 cut(s) 30
AsiGI ACCGGT 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 127
BbvI GCAGC 2 cut(s) 37, 175
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 2 cut(s) 27, 205
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 2 cut(s) 51, 189
BlsI GCNGC 2 cut(s) 52, 190
Bme1390I CCNGG 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 127
BpuMI CCSGG 1 cut(s) 127
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 147
BsaWI WCCGGW 3 cut(s) 112, 119, 139
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 119, 126
Bse118I RCCGGY 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 147
BseLI CCNNNNNNNGG 3 cut(s) 112, 119, 126
BseXI GCAGC 2 cut(s) 37, 175
BshTI ACCGGT 1 cut(s) 112
BsiSI CCGG 4 cut(s) 113, 120, 126, 140
BslI CCNNNNNNNGG 3 cut(s) 112, 119, 126
BsmAI GTCTC 1 cut(s) 181
Bso31I GGTCTC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 156
BspACI CCGC 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 124
BspMI ACCTGC 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 9
BstDSI CCRYGG 1 cut(s) 147
BstEII GGTNACC 1 cut(s) 115
BstKTI GATC 1 cut(s) 159
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 2 cut(s) 131, 194
BstPI GGTNACC 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 125
BstV1I GCAGC 2 cut(s) 37, 175
BstXI CCANNNNNNTGG 1 cut(s) 76
BtgI CCRYGG 1 cut(s) 147
BveI ACCTGC 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 112
CspAI ACCGGT 1 cut(s) 112
CviAII CATG 1 cut(s) 43
CviJI RGCY 3 cut(s) 26, 125, 188
CviKI_1 RGCY 3 cut(s) 26, 125, 188
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 6
Eco91I GGTNACC 1 cut(s) 115
EcoO65I GGTNACC 1 cut(s) 115
EcoRI GAATTC 1 cut(s) 30
FaeI CATG 1 cut(s) 46
FaiI YATR 5 cut(s) 38, 44, 63, 77, 170
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 51, 189
Fsp4HI GCNGC 2 cut(s) 51, 189
FspBI CTAG 2 cut(s) 27, 205
GluI GCNGC 2 cut(s) 51, 189
HapII CCGG 4 cut(s) 113, 120, 126, 140
Hin1II CATG 1 cut(s) 46
HpaII CCGG 4 cut(s) 113, 120, 126, 140
HphI GGTGA 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 194
Hsp92II CATG 1 cut(s) 46
Kzo9I GATC 1 cut(s) 156
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 5 cut(s) 114, 126, 133, 139, 153
Lsp1109I GCAGC 2 cut(s) 37, 175
MaeI CTAG 2 cut(s) 27, 205
MaeIII GTNAC 3 cut(s) 64, 108, 115
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 2 cut(s) 12, 156
MluCI AATT 1 cut(s) 30
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 4 cut(s) 113, 120, 126, 140
MspR9I CCNGG 1 cut(s) 127
MwoI GCNNNNNNNGC 2 cut(s) 131, 194
NciI CCSGG 1 cut(s) 127
NdeII GATC 1 cut(s) 156
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 1 cut(s) 124
NmuCI GTSAC 2 cut(s) 64, 115
PaqCI CACCTGC 1 cut(s) 109
PinAI ACCGGT 1 cut(s) 112
PkrI GCNGC 2 cut(s) 52, 190
PspEI GGTNACC 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 188
SatI GCNGC 2 cut(s) 51, 189
Sau3AI GATC 1 cut(s) 156
ScrFI CCNGG 1 cut(s) 127
SetI ASST 3 cut(s) 28, 103, 190
Sse9I AATT 1 cut(s) 30
SsiI CCGC 1 cut(s) 90
SspMI CTAG 2 cut(s) 27, 205
StyD4I CCNGG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 9
TasI AATT 1 cut(s) 30
TseFI GTSAC 2 cut(s) 64, 115
TseI GCWGC 2 cut(s) 50, 188
Tsp45I GTSAC 2 cut(s) 64, 115
TspGWI ACGGA 1 cut(s) 136
XapI RAATTY 1 cut(s) 30
XspI CTAG 2 cut(s) 27, 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.