Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0017753

Physical Location & Seq

Genomic Coordinates Reverse (-)

11600281 .. 11603983

Gene Structure 3703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G080700.2_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGGCAATGCAATTACACTCTTTGCTCTTATATGTGGTGCTTCTCTTTGGCTTTGCGTTGGCAAATACCAATGCTTTGCATTGCCAAAAACCCTCGCCACCCATTGATTGCCCAAATAATCTGAACAGGGCCCATTTTGATTCTCTTGTACCACATTTCATATTTGGTGCTGCTTCATCAGCTTACCAAGTAGAAGGTGCTGCAAACGAAGATGGTAGAGGACCAAGCATATGGGATTTCTTCACCCACAACCATCCAGAAAAGATCGATGATCAAAGTAATGGAGATGTCGCCATTGATGAATATCATCGCTATAAGGAAGATGTGGGGATTATGAAGAATATGTCAATGGAAGCGTATAGGTTCTCTATCTCATGGTCCAGAGTATTACCAAGAGGAACTGGTCAACCTAACCCGAAAGGAATCAAATACTACAATAATCTCATCAATGAACTCCTAAAGAAAGGTATGAAACCATATGTTACACTCTTTCACTGGGATGTTCCCCAAGCCTTACAAGAAAAATATGGTGGTTTCTTAAGCCCTCATATTGTCGATGACTTTAGAGCATACGCAGAACTGTGTTACAAGGAATTTGGTGATCGAGTAAGGCATTGGATGACAGTTAATGAGCCATATACCGTGAGTAACCATGGTTATACAATCGGGCTCCATGCACCAGGCCGATGCTCTTATAAGTACGACCAGACATGCCTCGGTGGAGATTCAGCTACTGAACCATATTTGGTGACACACCACCAACTCCTTGCTCATGCCGCTGCTGTAAAATTGTACAAGGATAAATATCAGGCATTGCAAAAAGGTGTGATAGGAATAACATTGAATACTCACTGGTTTGAGCCTGCTTCTAAGGCAAAGCATGATATAGATGCCGCATTTCGAGCTTTGGATTTTATGTTTGGATGGTATATGGACCCATTGACAAATGGTGACTATCCACCTAGCATGCGATTTCTTGTTGGAAAACGATTACCAAAATTCACAAATGAAGAATCCAAGTTGCTGAAAGGGTCATACGATTTTATTGGAGTAAATTACTATTCTGCTAGATATGCAAGTGCTTATCCTGCAGATTATATAATACCTAAGCCCCCAAGCTACTTGACTGATGCTTATGTTAATGTTACAACTGAGTTTAATGGGGTTCCCATTGGTCCAAGGGCTGCTTCAAACTGGTTATATATTTACCCAAAAGGACTTTATGATCTTGTACTCTACACAAAGAAAATGTATAATGATCCGATTATGTACATTACTGAGAATGGCGTGGATGAGTTCGATAATCCCAAAGTACCACTTCAGATGGCCCTTAAGGATTCCAATAGAATTTACTACTACTATCACCACCTTTGTTACCTCCAAGCAGCAATTAAAGAAGGTGCTAATGTGCAGGGATACTTTGCATGGTCATTGCTAGACAACTTTGAATGGAGCTCTGGATACACTATGCGGTTTGGTATAAATTATGTCGATTACGCCAATAGACTAAAAAGACACCCAAAAGACTCGACGTACTGGTTCCAAAGTTTCCTCAAGAGTACACAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

524

Amino Acids

60.12

Weight (kDa)

7.04

Isoelectric Point (pI)

28.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017753)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G080500_v2.0.a1 Prupe.7G080500_v2.0.a1 Prupe.7G080500_v2.0.a1 Prupe.7G080500_v2.0.a1 Prupe.7G080500_v2.0.a1 Prupe.7G080500_v2.0.a1 Prupe.7G080500_v2.0.a1 Prupe.7G080500_v2.0.a1 Prupe.7G080500_v2.0.a1 Prupe.7G080500_v2.0.a1 Prupe.7G080700_v2.0.a1 Prupe.7G080700_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
AciI	CCGC	3 cut(s)	777, 894, 1471
AclWI	GGATC	1 cut(s)	1253
AcsI	RAATTY	4 cut(s)	593, 998, 1347, 1566
AcuI	CTGAAG	1 cut(s)	1304
AfaI	GTAC	8 cut(s)	150, 701, 794, 1233, 1271, 1314, 1535, 1561
AflII	CTTAAG	2 cut(s)	538, 1331
AgsI	TTSAA	3 cut(s)	844, 1191, 1448
AjnI	CCWGG	1 cut(s)	679
AjuI	GAANNNNNNNTTGG	2 cut(s)	1171, 1203
AluBI	AGCT	5 cut(s)	182, 731, 905, 1119, 1455
AluI	AGCT	5 cut(s)	182, 731, 905, 1119, 1455
Alw21I	GWGCWC	1 cut(s)	1457
AlwI	GGATC	1 cut(s)	1253
AlwNI	CAGNNNCTG	1 cut(s)	734
AoxI	GGCC	3 cut(s)	129, 682, 1326
ApaI	GGGCCC	1 cut(s)	133
ApeKI	GCWGC	5 cut(s)	170, 200, 779, 1184, 1385
ApoI	RAATTY	4 cut(s)	593, 998, 1347, 1566
AspS9I	GGNCC	7 cut(s)	129, 130, 221, 378, 934, 1175, 1327
AsuHPI	GGTGA	5 cut(s)	235, 611, 760, 962, 1355
AvaII	GGWCC	4 cut(s)	221, 378, 934, 1175
BaeGI	GKGCMC	1 cut(s)	133
BanII	GRGCYC	3 cut(s)	133, 672, 1457
Bbv12I	GWGCWC	1 cut(s)	1457
BbvI	GCAGC	5 cut(s)	157, 187, 766, 1171, 1397
BccI	CCATC	4 cut(s)	206, 261, 918, 1318
BciT130I	CCWGG	1 cut(s)	681
BciVI	GTATCC	2 cut(s)	1409, 1454
BclI	TGATCA	1 cut(s)	271
BfaI	CTAG	3 cut(s)	963, 1068, 1436
BfmI	CTRYAG	1 cut(s)	1089
BfrI	CTTAAG	2 cut(s)	538, 1331
BfuI	GTATCC	2 cut(s)	1409, 1454
BisI	GCNGC	7 cut(s)	171, 201, 777, 780, 894, 1185, 1386
BlsI	GCNGC	7 cut(s)	172, 202, 778, 781, 895, 1186, 1387
Bme1390I	CCNGG	1 cut(s)	681
Bme18I	GGWCC	4 cut(s)	221, 378, 934, 1175
BmgT120I	GGNCC	7 cut(s)	129, 130, 221, 378, 934, 1175, 1327
BmiI	GGNNCC	5 cut(s)	131, 671, 936, 1167, 1541
BmrFI	CCNGG	1 cut(s)	681
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	3 cut(s)	677, 880, 1120
BmuI	ACTGGG	1 cut(s)	505
Bpu10I	CCTNAGC	1 cut(s)	1107
BpuEI	CTTGAG	1 cut(s)	1538
Bsa29I	ATCGAT	1 cut(s)	267
BsaBI	GATNNNNATC	2 cut(s)	303, 804
BsaJI	CCNNGG	3 cut(s)	652, 715, 1178
Bse1I	ACTGG	5 cut(s)	406, 500, 857, 1199, 1541
Bse3DI	GCAATG	4 cut(s)	12, 79, 812, 1430
Bse8I	GATNNNNATC	2 cut(s)	303, 804
BseBI	CCWGG	1 cut(s)	681
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	652, 715, 1178
BseGI	GGATG	5 cut(s)	253, 505, 624, 929, 1297
BseJI	GATNNNNATC	2 cut(s)	303, 804
BseMI	GCAATG	4 cut(s)	12, 79, 812, 1430
BseMII	CTCAG	2 cut(s)	1143, 1269
BseNI	ACTGG	5 cut(s)	406, 500, 857, 1199, 1541
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	5 cut(s)	157, 187, 766, 1171, 1397
BsgI	GTGCAG	1 cut(s)	1430
BshFI	GGCC	3 cut(s)	131, 684, 1328
BshVI	ATCGAT	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	1457
BsnI	GGCC	3 cut(s)	131, 684, 1328
Bsp120I	GGGCCC	1 cut(s)	129
Bsp1286I	GDGCHC	3 cut(s)	133, 672, 1457
Bsp1407I	TGTACA	2 cut(s)	792, 1269
Bsp143I	GATC	5 cut(s)	264, 271, 601, 1225, 1258
Bsp19I	CCATGG	1 cut(s)	652
BspACI	CCGC	3 cut(s)	777, 894, 1471
BspANI	GGCC	3 cut(s)	131, 684, 1328
BspCNI	CTCAG	2 cut(s)	1144, 1270
BspDI	ATCGAT	1 cut(s)	267
BspLI	GGNNCC	5 cut(s)	131, 671, 936, 1167, 1541
BspMAI	CTGCAG	1 cut(s)	1093
BspPI	GGATC	1 cut(s)	1253
BspTI	CTTAAG	2 cut(s)	538, 1331
BsrDI	GCAATG	4 cut(s)	12, 79, 812, 1430
BsrGI	TGTACA	2 cut(s)	792, 1269
BsrI	ACTGG	5 cut(s)	406, 500, 857, 1199, 1541
BssECI	CCNNGG	3 cut(s)	652, 715, 1178
BssMI	GATC	5 cut(s)	264, 271, 601, 1225, 1258
BssT1I	CCWWGG	2 cut(s)	652, 1178
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	3 cut(s)	582, 625, 643
BstAFI	CTTAAG	2 cut(s)	538, 1331
BstAUI	TGTACA	2 cut(s)	792, 1269
BstC8I	GCNNGC	2 cut(s)	864, 968
BstDEI	CTNAG	4 cut(s)	870, 1107, 1152, 1278
BstDSI	CCRYGG	1 cut(s)	652
BstF5I	GGATG	5 cut(s)	253, 505, 624, 929, 1297
BstKTI	GATC	5 cut(s)	267, 274, 604, 1228, 1261
BstMBI	GATC	5 cut(s)	264, 271, 601, 1225, 1258
BstMWI	GCNNNNNNNGC	6 cut(s)	179, 776, 872, 902, 1073, 1088
BstNI	CCWGG	1 cut(s)	681
BstNSI	RCATGY	2 cut(s)	714, 970
BstSCI	CCNGG	1 cut(s)	679
BstSFI	CTRYAG	1 cut(s)	1089
BstSLI	GKGCMC	1 cut(s)	133
BstV1I	GCAGC	5 cut(s)	157, 187, 766, 1171, 1397
BstXI	CCANNNNNNTGG	1 cut(s)	231
Bsu15I	ATCGAT	1 cut(s)	267
BsuI	GTATCC	2 cut(s)	1409, 1454
BsuRI	GGCC	3 cut(s)	131, 684, 1328
BsuTUI	ATCGAT	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	652
BtgZI	GCGATG	1 cut(s)	293
BtsCI	GGATG	5 cut(s)	253, 505, 624, 929, 1297
BtsIMutI	CAGTG	2 cut(s)	493, 850
Cac8I	GCNNGC	2 cut(s)	864, 968
CaiI	CAGNNNCTG	1 cut(s)	734
Cfr13I	GGNCC	7 cut(s)	129, 130, 221, 378, 934, 1175, 1327
ClaI	ATCGAT	1 cut(s)	267
Csp6I	GTAC	8 cut(s)	149, 700, 793, 1232, 1270, 1313, 1534, 1560
CviAII	CATG	8 cut(s)	375, 653, 674, 711, 773, 881, 967, 1425
CviQI	GTAC	8 cut(s)	149, 700, 793, 1232, 1270, 1313, 1534, 1560
DdeI	CTNAG	4 cut(s)	870, 1107, 1152, 1278
DpnI	GATC	5 cut(s)	266, 273, 603, 1227, 1260
DpnII	GATC	5 cut(s)	264, 271, 601, 1225, 1258
Ecl136II	GAGCTC	1 cut(s)	1455
Eco130I	CCWWGG	2 cut(s)	652, 1178
Eco24I	GRGCYC	3 cut(s)	133, 672, 1457
Eco47I	GGWCC	4 cut(s)	221, 378, 934, 1175
Eco53kI	GAGCTC	1 cut(s)	1455
Eco57I	CTGAAG	1 cut(s)	1304
EcoICRI	GAGCTC	1 cut(s)	1455
EcoO109I	RGGNCCY	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	679
EcoT14I	CCWWGG	2 cut(s)	652, 1178
EcoT38I	GRGCYC	3 cut(s)	133, 672, 1457
ErhI	CCWWGG	2 cut(s)	652, 1178
FaeI	CATG	8 cut(s)	378, 656, 677, 714, 776, 884, 970, 1428
FalI	AAGNNNNNCTT	4 cut(s)	1171, 1203, 1302, 1334
FatI	CATG	8 cut(s)	374, 652, 673, 710, 772, 880, 966, 1424
FauNDI	CATATG	2 cut(s)	230, 478
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	7 cut(s)	171, 201, 777, 780, 894, 1185, 1386
FokI	GGATG	5 cut(s)	240, 512, 631, 936, 1304
FriOI	GRGCYC	3 cut(s)	133, 672, 1457
Fsp4HI	GCNGC	7 cut(s)	171, 201, 777, 780, 894, 1185, 1386
FspBI	CTAG	3 cut(s)	963, 1068, 1436
GluI	GCNGC	7 cut(s)	171, 201, 777, 780, 894, 1185, 1386
HaeIII	GGCC	3 cut(s)	131, 684, 1328
Hin1II	CATG	8 cut(s)	378, 656, 677, 714, 776, 884, 970, 1428
HincII	GTYRAC	1 cut(s)	407
HindII	GTYRAC	1 cut(s)	407
HinfI	GANTC	6 cut(s)	140, 423, 725, 1013, 1337, 1526
HphI	GGTGA	5 cut(s)	235, 611, 760, 962, 1355
Hpy166II	GTNNAC	2 cut(s)	407, 1562
Hpy188I	TCNGA	3 cut(s)	123, 1263, 1323
Hpy188III	TCNNGA	4 cut(s)	257, 381, 1458, 1555
Hpy8I	GTNNAC	2 cut(s)	407, 1562
Hpy99I	CGWCG	1 cut(s)	1534
HpyAV	CCTTC	2 cut(s)	188, 1391
HpyCH4III	ACNGT	3 cut(s)	582, 625, 643
HpyCH4IV	ACGT	1 cut(s)	1532
HpyCH4V	TGCA	9 cut(s)	10, 79, 203, 677, 817, 1076, 1091, 1411, 1424
HpyF10VI	GCNNNNNNNGC	6 cut(s)	179, 776, 872, 902, 1073, 1088
HpyF3I	CTNAG	4 cut(s)	870, 1107, 1152, 1278
HpySE526I	ACGT	1 cut(s)	1532
Hsp92II	CATG	8 cut(s)	378, 656, 677, 714, 776, 884, 970, 1428
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	5 cut(s)	264, 271, 601, 1225, 1258
LmnI	GCTCC	2 cut(s)	675, 1452
Lsp1109I	GCAGC	5 cut(s)	157, 187, 766, 1171, 1397
LweI	GCATC	3 cut(s)	677, 880, 1120
MaeI	CTAG	3 cut(s)	963, 1068, 1436
MaeII	ACGT	1 cut(s)	1532
MaeIII	GTNAC	7 cut(s)	481, 584, 647, 748, 950, 1144, 1373
MalI	GATC	5 cut(s)	266, 273, 603, 1227, 1260
MboI	GATC	5 cut(s)	264, 271, 601, 1225, 1258
MboII	GAAGA	5 cut(s)	221, 232, 332, 349, 1022
MhlI	GDGCHC	3 cut(s)	133, 672, 1457
MluCI	AATT	9 cut(s)	11, 593, 788, 998, 1054, 1347, 1389, 1483, 1566
MlyI	GAGTC	1 cut(s)	1520
MmeI	TCCRAC	1 cut(s)	961
MnlI	CCTC	7 cut(s)	103, 212, 389, 555, 725, 1388, 1562
MseI	TTAA	6 cut(s)	539, 627, 1140, 1158, 1332, 1392
MslI	CAYNNNNRTG	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	779
MspCI	CTTAAG	2 cut(s)	538, 1331
MspR9I	CCNGG	1 cut(s)	681
MvaI	CCWGG	1 cut(s)	681
MwoI	GCNNNNNNNGC	6 cut(s)	179, 776, 872, 902, 1073, 1088
NcoI	CCATGG	1 cut(s)	652
NdeI	CATATG	2 cut(s)	230, 478
NdeII	GATC	5 cut(s)	264, 271, 601, 1225, 1258
NlaIII	CATG	8 cut(s)	378, 656, 677, 714, 776, 884, 970, 1428
NlaIV	GGNNCC	5 cut(s)	131, 671, 936, 1167, 1541
NmuCI	GTSAC	2 cut(s)	748, 950
NspI	RCATGY	2 cut(s)	714, 970
PaeI	GCATGC	1 cut(s)	970
PfeI	GAWTC	5 cut(s)	140, 423, 725, 1013, 1337
PkrI	GCNGC	7 cut(s)	172, 202, 778, 781, 895, 1186, 1387
PleI	GAGTC	1 cut(s)	1520
PpsI	GAGTC	1 cut(s)	1520
PsiI	TTATAA	1 cut(s)	696
Psp124BI	GAGCTC	1 cut(s)	1457
Psp6I	CCWGG	1 cut(s)	679
PspGI	CCWGG	1 cut(s)	679
PspN4I	GGNNCC	5 cut(s)	131, 671, 936, 1167, 1541
PspOMI	GGGCCC	1 cut(s)	129
PspPI	GGNCC	7 cut(s)	129, 130, 221, 378, 934, 1175, 1327
PstI	CTGCAG	1 cut(s)	1093
PstNI	CAGNNNCTG	1 cut(s)	734
RsaI	GTAC	8 cut(s)	150, 701, 794, 1233, 1271, 1314, 1535, 1561
RsaNI	GTAC	8 cut(s)	149, 700, 793, 1232, 1270, 1313, 1534, 1560
RseI	CAYNNNNRTG	1 cut(s)	498
SacI	GAGCTC	1 cut(s)	1457
SaqAI	TTAA	6 cut(s)	539, 627, 1140, 1158, 1332, 1392
SatI	GCNGC	7 cut(s)	171, 201, 777, 780, 894, 1185, 1386
Sau3AI	GATC	5 cut(s)	264, 271, 601, 1225, 1258
Sau96I	GGNCC	7 cut(s)	129, 130, 221, 378, 934, 1175, 1327
SchI	GAGTC	1 cut(s)	1520
ScrFI	CCNGG	1 cut(s)	681
SduI	GDGCHC	3 cut(s)	133, 672, 1457
SfaNI	GCATC	3 cut(s)	677, 880, 1120
SfcI	CTRYAG	1 cut(s)	1089
SinI	GGWCC	4 cut(s)	221, 378, 934, 1175
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	3 cut(s)	538, 1331, 1553
SmoI	CTYRAG	3 cut(s)	538, 1331, 1553
SphI	GCATGC	1 cut(s)	970
Sse9I	AATT	9 cut(s)	11, 593, 788, 998, 1054, 1347, 1389, 1483, 1566
SsiI	CCGC	3 cut(s)	777, 894, 1471
SspMI	CTAG	3 cut(s)	963, 1068, 1436
SstI	GAGCTC	1 cut(s)	1457
StyD4I	CCNGG	1 cut(s)	679
StyI	CCWWGG	2 cut(s)	652, 1178
TaaI	ACNGT	3 cut(s)	582, 625, 643
TaiI	ACGT	1 cut(s)	1535
TaqI	TCGA	7 cut(s)	267, 555, 604, 901, 1299, 1491, 1529
TasI	AATT	9 cut(s)	11, 593, 788, 998, 1054, 1347, 1389, 1483, 1566
TatI	WGTACW	4 cut(s)	792, 1231, 1269, 1559
TauI	GCSGC	2 cut(s)	779, 896
TfiI	GAWTC	5 cut(s)	140, 423, 725, 1013, 1337
Tru1I	TTAA	6 cut(s)	539, 627, 1140, 1158, 1332, 1392
Tru9I	TTAA	6 cut(s)	539, 627, 1140, 1158, 1332, 1392
TscAI	CASTG	2 cut(s)	500, 857
TseFI	GTSAC	2 cut(s)	748, 950
TseI	GCWGC	5 cut(s)	170, 200, 779, 1184, 1385
Tsp45I	GTSAC	2 cut(s)	748, 950
TspDTI	ATGAA	7 cut(s)	148, 165, 315, 350, 465, 485, 1023
TspRI	CASTG	2 cut(s)	500, 857
Vha464I	CTTAAG	2 cut(s)	538, 1331
VpaK11BI	GGWCC	4 cut(s)	221, 378, 934, 1175
XapI	RAATTY	4 cut(s)	593, 998, 1347, 1566
XceI	RCATGY	2 cut(s)	714, 970
XspI	CTAG	3 cut(s)	963, 1068, 1436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.