Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

11951717 .. 11952760

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G084000.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGGATTCGCTCAAGCAAAAGGTCTAGTGCTTGTGCAGATCTCAGTGCTTCTACTGAGCTGCTTCATTGTGCTTGGTAAAGAAATTGAGTCTTTGGCACCCAATTCTCATGCACCAAGCCATGCACCGGTTCATCCTCCAAGCCATGCACCGGCTCACTCACCAAGTCACCACCATCACCACCACCACGGCCACCCTCCCAGCCACGCACCAGTTCACCCTCATAGCCATTCACCGGTTCATCCACCAAGCCATTCACCGGTTCATCCTCCAAGCCATGCACCGGCTCAGTCACCAACTCACCACCACCATCACCATGGTCATCCTCCCAGCCACGCTCCGGTTCACCCACCAAGCCAATCGCCGGTTCACCCTCCTAGCCATTCACCGGTTCACCCTCCAAGCCATGCACCGGCTCACTCACCAAGTCACCACCACCACAGTCACCCTCCCAGCCACGCACCGGTTCACCCACCTAGCCACGCCCCGGTTCAACCCCCTAGCCACCCTCCCACTCACCATTCACCATCCCCCAGTCCAAGCCACCCCCCGGTTCACCCTCCACAATCTCCACCAAAGAGCTTTGTAGCGGTTCAAGGCATTGTCTATTGCAAATCCTGCAAGTACTCTAAGGTTGATACCCTCTTGGGTGCCTCACCACTTCAAGGGGCTACTGTGAAGCTGCAGTGCAACGACACTAAGAAGCCACTAGTGGTCAAAGCCAAGACAGACAAGAAGGGTTACTTCTTCATCACGGCACCCAAGCACATAACCTCCCATGGGGTCCACAAGTGCAAGCCGTCTGATTTCCAGGGTGGTCTAAGGGGTGCCATCTTGAAGCCAGAGAAGCCATTTGTCTCCGGAAAACTCCCATTTTTCCTCTACTCCGTTGGCCCATTTGCCTTCGAGCCTAAATGCCATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0016020 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:0080050 GO:1901700 GO:2000026 GO:2000033 GO:2000034 GO:2000241 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

309

Amino Acids

33.03

Weight (kDa)

9.63

Isoelectric Point (pI)

73.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	97, 650, 757, 827
AccIII	TCCGGA	1 cut(s)	860
AciI	CCGC	1 cut(s)	590
AcoI	YGGCCR	1 cut(s)	190
AfaI	GTAC	1 cut(s)	626
AgeI	ACCGGT	5 cut(s)	127, 235, 259, 388, 463
AgsI	TTSAA	4 cut(s)	494, 596, 665, 838
AhlI	ACTAGT	1 cut(s)	709
AjnI	CCWGG	1 cut(s)	810
AjuI	GAANNNNNNNTTGG	2 cut(s)	351, 383
AluBI	AGCT	3 cut(s)	60, 582, 682
AluI	AGCT	3 cut(s)	60, 582, 682
Alw26I	GTCTC	1 cut(s)	862
Aor13HI	TCCGGA	1 cut(s)	860
AoxI	GGCC	2 cut(s)	190, 892
ApeKI	GCWGC	2 cut(s)	60, 682
AsiGI	ACCGGT	5 cut(s)	127, 235, 259, 388, 463
AspS9I	GGNCC	2 cut(s)	784, 893
AsuC2I	CCSGG	2 cut(s)	488, 551
AvaII	GGWCC	1 cut(s)	784
BanI	GGYRCC	4 cut(s)	97, 650, 757, 827
BbvI	GCAGC	2 cut(s)	47, 669
BccI	CCATC	4 cut(s)	183, 318, 535, 839
BceAI	ACGGC	3 cut(s)	205, 771, 784
BciT130I	CCWGG	1 cut(s)	812
BcnI	CCSGG	2 cut(s)	488, 551
BcoDI	GTCTC	1 cut(s)	862
BcuI	ACTAGT	1 cut(s)	709
BfaI	CTAG	5 cut(s)	26, 378, 477, 501, 710
BfmI	CTRYAG	1 cut(s)	683
BglII	AGATCT	1 cut(s)	39
BisI	GCNGC	2 cut(s)	61, 683
BlsI	GCNGC	2 cut(s)	62, 684
BmcAI	AGTACT	1 cut(s)	626
Bme1390I	CCNGG	3 cut(s)	488, 551, 812
Bme18I	GGWCC	1 cut(s)	784
BmgT120I	GGNCC	2 cut(s)	784, 893
BmiI	GGNNCC	5 cut(s)	99, 652, 759, 785, 829
BmrFI	CCNGG	3 cut(s)	488, 551, 812
BmrI	ACTGGG	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	528
BpuMI	CCSGG	2 cut(s)	488, 551
BsaJI	CCNNGG	6 cut(s)	187, 316, 486, 549, 778, 811
BsaWI	WCCGGW	7 cut(s)	127, 235, 259, 340, 388, 463, 860
BsaXI	ACNNNNNCTCC	2 cut(s)	758, 788
Bse118I	RCCGGY	9 cut(s)	127, 151, 235, 259, 283, 364, 388, 412, 463
Bse1I	ACTGG	2 cut(s)	212, 534
BseAI	TCCGGA	1 cut(s)	860
BseBI	CCWGG	1 cut(s)	812
BseDI	CCNNGG	6 cut(s)	187, 316, 486, 549, 778, 811
BseGI	GGATG	5 cut(s)	133, 241, 265, 322, 527
BseMII	CTCAG	3 cut(s)	47, 57, 302
BseNI	ACTGG	2 cut(s)	212, 534
BseXI	GCAGC	2 cut(s)	47, 669
BseYI	CCCAGC	3 cut(s)	200, 329, 452
BsgI	GTGCAG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	192, 894
BshNI	GGYRCC	4 cut(s)	97, 650, 757, 827
BshTI	ACCGGT	5 cut(s)	127, 235, 259, 388, 463
BsmAI	GTCTC	1 cut(s)	862
BsnI	GGCC	2 cut(s)	192, 894
Bsp13I	TCCGGA	1 cut(s)	860
Bsp143I	GATC	1 cut(s)	39
Bsp19I	CCATGG	2 cut(s)	316, 778
BspACI	CCGC	1 cut(s)	590
BspANI	GGCC	2 cut(s)	192, 894
BspCNI	CTCAG	3 cut(s)	48, 56, 301
BspEI	TCCGGA	1 cut(s)	860
BspLI	GGNNCC	5 cut(s)	99, 652, 759, 785, 829
BspMAI	CTGCAG	1 cut(s)	687
BspT107I	GGYRCC	4 cut(s)	97, 650, 757, 827
BsrFI	RCCGGY	9 cut(s)	127, 151, 235, 259, 283, 364, 388, 412, 463
BsrI	ACTGG	2 cut(s)	212, 534
BssAI	RCCGGY	9 cut(s)	127, 151, 235, 259, 283, 364, 388, 412, 463
BssECI	CCNNGG	6 cut(s)	187, 316, 486, 549, 778, 811
BssMI	GATC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	316, 778
Bst2UI	CCWGG	1 cut(s)	812
Bst4CI	ACNGT	2 cut(s)	443, 676
BstAPI	GCANNNNNTGC	1 cut(s)	618
BstC8I	GCNNGC	1 cut(s)	797
BstDEI	CTNAG	6 cut(s)	43, 56, 288, 630, 699, 821
BstDSI	CCRYGG	3 cut(s)	187, 316, 778
BstF5I	GGATG	5 cut(s)	133, 241, 265, 322, 527
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	862
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	2 cut(s)	618, 847
BstNI	CCWGG	1 cut(s)	812
BstSCI	CCNGG	3 cut(s)	486, 549, 810
BstSFI	CTRYAG	1 cut(s)	683
BstV1I	GCAGC	2 cut(s)	47, 669
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	192, 894
BtgI	CCRYGG	3 cut(s)	187, 316, 778
BtsCI	GGATG	5 cut(s)	133, 241, 265, 322, 527
BtsI	GCAGTG	1 cut(s)	692
BtsIMutI	CAGTG	2 cut(s)	51, 692
Cac8I	GCNNGC	1 cut(s)	797
Cfr10I	RCCGGY	9 cut(s)	127, 151, 235, 259, 283, 364, 388, 412, 463
Cfr13I	GGNCC	2 cut(s)	784, 893
Csp6I	GTAC	1 cut(s)	625
CspAI	ACCGGT	5 cut(s)	127, 235, 259, 388, 463
CviAII	CATG	7 cut(s)	110, 122, 146, 278, 317, 407, 779
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	6 cut(s)	43, 56, 288, 630, 699, 821
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
EaeI	YGGCCR	1 cut(s)	190
Eco130I	CCWWGG	2 cut(s)	316, 778
Eco47I	GGWCC	1 cut(s)	784
EcoRII	CCWGG	1 cut(s)	810
EcoT14I	CCWWGG	2 cut(s)	316, 778
ErhI	CCWWGG	2 cut(s)	316, 778
FaeI	CATG	7 cut(s)	113, 125, 149, 281, 320, 410, 782
FaiI	YATR	9 cut(s)	111, 123, 147, 225, 279, 318, 408, 770, 780
FalI	AAGNNNNNCTT	2 cut(s)	728, 760
FatI	CATG	7 cut(s)	109, 121, 145, 277, 316, 406, 778
Fnu4HI	GCNGC	2 cut(s)	61, 683
FokI	GGATG	5 cut(s)	120, 228, 252, 309, 514
Fsp4HI	GCNGC	2 cut(s)	61, 683
FspBI	CTAG	5 cut(s)	26, 378, 477, 501, 710
GluI	GCNGC	2 cut(s)	61, 683
GsaI	CCCAGC	3 cut(s)	204, 333, 456
HaeIII	GGCC	2 cut(s)	192, 894
Hin1II	CATG	7 cut(s)	113, 125, 149, 281, 320, 410, 782
HinfI	GANTC	2 cut(s)	6, 89
Hpy166II	GTNNAC	7 cut(s)	217, 346, 370, 394, 469, 556, 787
Hpy188I	TCNGA	1 cut(s)	805
Hpy188III	TCNNGA	2 cut(s)	835, 861
Hpy8I	GTNNAC	7 cut(s)	217, 346, 370, 394, 469, 556, 787
HpyAV	CCTTC	2 cut(s)	730, 913
HpyCH4III	ACNGT	2 cut(s)	443, 676
HpyF10VI	GCNNNNNNNGC	2 cut(s)	618, 847
HpyF3I	CTNAG	6 cut(s)	43, 56, 288, 630, 699, 821
Hsp92II	CATG	7 cut(s)	113, 125, 149, 281, 320, 410, 782
Kpn2I	TCCGGA	1 cut(s)	860
Kzo9I	GATC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	343
Lsp1109I	GCAGC	2 cut(s)	47, 669
MaeI	CTAG	5 cut(s)	26, 378, 477, 501, 710
MaeIII	GTNAC	5 cut(s)	167, 291, 428, 443, 740
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	1 cut(s)	739
MflI	RGATCY	1 cut(s)	39
MluCI	AATT	2 cut(s)	84, 103
MlyI	GAGTC	1 cut(s)	98
MroI	TCCGGA	1 cut(s)	860
MseI	TTAA	1 cut(s)	925
MslI	CAYNNNNRTG	1 cut(s)	315
MspR9I	CCNGG	3 cut(s)	488, 551, 812
MvaI	CCWGG	1 cut(s)	812
MwoI	GCNNNNNNNGC	2 cut(s)	618, 847
NciI	CCSGG	2 cut(s)	488, 551
NcoI	CCATGG	2 cut(s)	316, 778
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	7 cut(s)	113, 125, 149, 281, 320, 410, 782
NlaIV	GGNNCC	5 cut(s)	99, 652, 759, 785, 829
NmuCI	GTSAC	4 cut(s)	167, 291, 428, 443
PfeI	GAWTC	1 cut(s)	6
PinAI	ACCGGT	5 cut(s)	127, 235, 259, 388, 463
PkrI	GCNGC	2 cut(s)	62, 684
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	810
PspFI	CCCAGC	3 cut(s)	200, 329, 452
PspGI	CCWGG	1 cut(s)	810
PspN4I	GGNNCC	5 cut(s)	99, 652, 759, 785, 829
PspPI	GGNCC	2 cut(s)	784, 893
PstI	CTGCAG	1 cut(s)	687
PsuI	RGATCY	1 cut(s)	39
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	925
SatI	GCNGC	2 cut(s)	61, 683
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	2 cut(s)	784, 893
ScaI	AGTACT	1 cut(s)	626
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	3 cut(s)	488, 551, 812
SetI	ASST	7 cut(s)	25, 62, 478, 584, 636, 684, 776
SfcI	CTRYAG	1 cut(s)	683
SinI	GGWCC	1 cut(s)	784
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
SpeI	ACTAGT	1 cut(s)	709
Sse9I	AATT	2 cut(s)	84, 103
SsiI	CCGC	1 cut(s)	590
SspMI	CTAG	5 cut(s)	26, 378, 477, 501, 710
StyD4I	CCNGG	3 cut(s)	486, 549, 810
StyI	CCWWGG	2 cut(s)	316, 778
TaaI	ACNGT	2 cut(s)	443, 676
TaqI	TCGA	1 cut(s)	906
TasI	AATT	2 cut(s)	84, 103
TatI	WGTACW	1 cut(s)	624
TfiI	GAWTC	1 cut(s)	6
Tru1I	TTAA	1 cut(s)	925
Tru9I	TTAA	1 cut(s)	925
TscAI	CASTG	2 cut(s)	51, 692
TseFI	GTSAC	4 cut(s)	167, 291, 428, 443
TseI	GCWGC	2 cut(s)	60, 682
Tsp45I	GTSAC	4 cut(s)	167, 291, 428, 443
TspDTI	ATGAA	5 cut(s)	55, 122, 230, 254, 739
TspGWI	ACGGA	1 cut(s)	877
TspRI	CASTG	2 cut(s)	51, 692
VpaK11BI	GGWCC	1 cut(s)	784
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XspI	CTAG	5 cut(s)	26, 378, 477, 501, 710
ZrmI	AGTACT	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.