Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

12042512 .. 12042874

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G085600.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

GCCGGGCCGAGAGATGGGGCGGCATGGACGCAGAGGCTGAAGGAGGAGTACAAGGCTTTGATCGCCTACACCCAGATGAACAAGTCCAACGATAACGATTGGTTCCGAATCTCCGCGGACAATCCCGAGGGGACACGTTGGACCGGCAAGTGCTGGTACGTCCACAACCTCCTCAAGTACGAGTTCGATCTCCAGTTCGATATCCCTGTCACCTACCCTGCTACCGCACCTGAGCACGAGCTCCCTGAGCTCGACGGCAAGACCCAAAAGATGTATAGAGGGGGGGAAGATCTGCTTGACAGTGCATTTCAAGCCGCTTTGGGCCAAGAACTGGTGGTGGTGGTGGTGTGCCGTCGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071568 GO:0071569 GO:0071704 GO:0140096 GO:1901564 GO:1990564 GO:1990592

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UFC1

Protein Analysis

121

Amino Acids

13.78

Weight (kDa)

5.13

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccII	CGCG	1 cut(s)	116
AciI	CCGC	5 cut(s)	20, 114, 116, 225, 315
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	3 cut(s)	50, 158, 179
AfiI	CCNNNNNNNGG	2 cut(s)	14, 331
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	311
AluBI	AGCT	2 cut(s)	241, 250
AluI	AGCT	2 cut(s)	241, 250
Alw21I	GWGCWC	3 cut(s)	237, 243, 252
AlwNI	CAGNNNCTG	1 cut(s)	37
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	2 cut(s)	5, 322
AspS9I	GGNCC	3 cut(s)	5, 141, 322
AsuC2I	CCSGG	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	141
BanII	GRGCYC	2 cut(s)	243, 252
BarI	GAAGNNNNNNTAC	2 cut(s)	32, 64
BauI	CACGAG	1 cut(s)	236
Bbv12I	GWGCWC	3 cut(s)	237, 243, 252
BccI	CCATC	1 cut(s)	8
BceAI	ACGGC	2 cut(s)	271, 336
BcnI	CCSGG	1 cut(s)	4
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	2 cut(s)	21, 315
BlsI	GCNGC	2 cut(s)	22, 316
Bme1390I	CCNGG	1 cut(s)	4
Bme18I	GGWCC	1 cut(s)	141
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	3 cut(s)	5, 141, 322
BmiI	GGNNCC	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	4
BpmI	CTGGAG	1 cut(s)	176
Bpu10I	CCTNAGC	2 cut(s)	231, 246
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	4
BsaJI	CCNNGG	2 cut(s)	114, 126
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 331
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	2 cut(s)	193, 336
BseDI	CCNNGG	2 cut(s)	114, 126
BseLI	CCNNNNNNNGG	2 cut(s)	14, 331
BseMII	CTCAG	2 cut(s)	222, 237
BseNI	ACTGG	2 cut(s)	193, 336
BseRI	GAGGAG	2 cut(s)	59, 161
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	7, 324
BsiHKAI	GWGCWC	3 cut(s)	237, 243, 252
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	2 cut(s)	3, 144
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	2 cut(s)	14, 331
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	7, 324
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	3 cut(s)	237, 243, 252
Bsp143I	GATC	3 cut(s)	60, 187, 289
BspACI	CCGC	5 cut(s)	20, 114, 116, 225, 315
BspANI	GGCC	2 cut(s)	7, 324
BspCNI	CTCAG	2 cut(s)	223, 238
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	193, 336
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	114, 126
BssMI	GATC	3 cut(s)	60, 187, 289
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	302
BstDEI	CTNAG	2 cut(s)	231, 246
BstDSI	CCRYGG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	116
BstKTI	GATC	3 cut(s)	63, 190, 292
BstMBI	GATC	3 cut(s)	60, 187, 289
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 247, 311
BstSCI	CCNGG	1 cut(s)	2
BstUI	CGCG	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	7, 324
BtgI	CCRYGG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	307
CaiI	CAGNNNCTG	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	3 cut(s)	5, 141, 322
Cfr42I	CCGCGG	1 cut(s)	117
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	3 cut(s)	49, 157, 178
CviAII	CATG	1 cut(s)	24
CviJI	RGCY	7 cut(s)	7, 37, 56, 241, 250, 314, 324
CviKI_1	RGCY	7 cut(s)	7, 37, 56, 241, 250, 314, 324
CviQI	GTAC	3 cut(s)	49, 157, 178
DdeI	CTNAG	2 cut(s)	231, 246
DpnI	GATC	3 cut(s)	62, 189, 291
DpnII	GATC	3 cut(s)	60, 187, 289
Ecl136II	GAGCTC	2 cut(s)	241, 250
Eco24I	GRGCYC	2 cut(s)	243, 252
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	141
Eco53kI	GAGCTC	2 cut(s)	241, 250
Eco57I	CTGAAG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	125
EcoICRI	GAGCTC	2 cut(s)	241, 250
EcoRV	GATATC	1 cut(s)	202
EcoT38I	GRGCYC	2 cut(s)	243, 252
FaeI	CATG	1 cut(s)	27
FaiI	YATR	2 cut(s)	25, 276
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	1 cut(s)	23
Fnu4HI	GCNGC	2 cut(s)	21, 315
FriOI	GRGCYC	2 cut(s)	243, 252
Fsp4HI	GCNGC	2 cut(s)	21, 315
GluI	GCNGC	2 cut(s)	21, 315
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	7, 324
HapII	CCGG	2 cut(s)	3, 144
HgaI	GACGC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	27
HinfI	GANTC	1 cut(s)	108
HpaII	CCGG	2 cut(s)	3, 144
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	107, 362
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	2 cut(s)	257, 357
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	2 cut(s)	136, 159
HpyCH4V	TGCA	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 247, 311
HpyF3I	CTNAG	2 cut(s)	231, 246
HpySE526I	ACGT	2 cut(s)	136, 159
Hsp92II	CATG	1 cut(s)	27
KspI	CCGCGG	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	60, 187, 289
LmnI	GCTCC	1 cut(s)	246
MaeII	ACGT	2 cut(s)	136, 159
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	3 cut(s)	62, 189, 291
MboI	GATC	3 cut(s)	60, 187, 289
MboII	GAAGA	1 cut(s)	299
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	3 cut(s)	237, 243, 252
MmeI	TCCRAC	2 cut(s)	111, 119
MnlI	CCTC	6 cut(s)	27, 37, 121, 179, 182, 272
MslI	CAYNNNNRTG	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	2 cut(s)	3, 144
MspR9I	CCNGG	1 cut(s)	4
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	3 cut(s)	62, 247, 311
NciI	CCSGG	1 cut(s)	4
NdeII	GATC	3 cut(s)	60, 187, 289
NlaIII	CATG	1 cut(s)	27
NlaIV	GGNNCC	1 cut(s)	104
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	108
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	22, 316
Psp124BI	GAGCTC	2 cut(s)	243, 252
PspN4I	GGNNCC	1 cut(s)	104
PspPI	GGNCC	3 cut(s)	5, 141, 322
PstNI	CAGNNNCTG	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	3 cut(s)	50, 158, 179
RsaNI	GTAC	3 cut(s)	49, 157, 178
RseI	CAYNNNNRTG	1 cut(s)	74
SacI	GAGCTC	2 cut(s)	243, 252
SacII	CCGCGG	1 cut(s)	117
SatI	GCNGC	2 cut(s)	21, 315
Sau3AI	GATC	3 cut(s)	60, 187, 289
Sau96I	GGNCC	3 cut(s)	5, 141, 322
ScrFI	CCNGG	1 cut(s)	4
SduI	GDGCHC	3 cut(s)	237, 243, 252
SetI	ASST	7 cut(s)	139, 162, 171, 215, 232, 243, 252
Sfr303I	CCGCGG	1 cut(s)	117
SgrBI	CCGCGG	1 cut(s)	117
SinI	GGWCC	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SsiI	CCGC	5 cut(s)	20, 114, 116, 225, 315
SstI	GAGCTC	2 cut(s)	243, 252
StyD4I	CCNGG	1 cut(s)	2
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	2 cut(s)	139, 162
TaqI	TCGA	3 cut(s)	186, 198, 252
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	2 cut(s)	23, 317
TfiI	GAWTC	1 cut(s)	108
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	307
Van91I	CCANNNNNTGG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.