Prupe.7G095300_v2.0.a1
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
12771654 .. 12774465
2812 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G095300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 450 bp
ATGGTGTTTTGGGTGAAGTGTTACTTTATTCATGTGGGCTCTAATGCCGCGATTGATAGGGATTATAAGTTCTCTAACAGACAAATTCACAAAACAAGATACATTTTTATGCACGCACATACTGTGTCTCGTGTGCACAACTACATGGCTAGATTTTCACCCATTTCATCAAAGACAGAGAGCTTAGTAGTAGATTGGTCATTTGTGAAGGTTGAGGACATCGCTGATGAGTATTGTCTAAATGAATCTGGTAATCCTATCTATAGAGATGAACAGCCAAGAAATGTTGAATATTTGCAATCTGGTTTTCCAGAGGCAATCCAGATTCAAGTAAAGGGGATTTGTCTTCATATGGGATGTCGAGTATTGCAAGAGCCATTCCCAATAACGAATACTTCAAAGCAGCACAACAATTGCTTGATGAAGTTGTCAATGTCCAGAAAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

17.47

Weight (kDa)

8.83

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 66
AccII CGCG 1 cut(s) 50
AciI CCGC 1 cut(s) 48
AcsI RAATTY 1 cut(s) 84
AgsI TTSAA 3 cut(s) 290, 329, 399
AloI GAACNNNNNNTCC 2 cut(s) 53, 85
AluBI AGCT 1 cut(s) 183
AluI AGCT 1 cut(s) 183
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 132
Alw44I GTGCAC 1 cut(s) 134
ApaLI GTGCAC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 403
ApoI RAATTY 1 cut(s) 84
AsuHPI GGTGA 2 cut(s) 25, 150
BaeGI GKGCMC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 41
BauI CACGAG 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 262
BisI GCNGC 2 cut(s) 48, 404
BlsI GCNGC 2 cut(s) 49, 405
BpiI GAAGAC 1 cut(s) 338
BseGI GGATG 1 cut(s) 362
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 1 cut(s) 415
Bsh1236I CGCG 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 41, 138
BspACI CCGC 1 cut(s) 48
BspFNI CGCG 1 cut(s) 50
BssSI CACGAG 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 1 cut(s) 362
BstFNI CGCG 1 cut(s) 50
BstMAI GTCTC 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 262
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 415
BstV2I GAAGAC 1 cut(s) 338
BtgZI GCGATG 1 cut(s) 205
BtsCI GGATG 1 cut(s) 362
BtsIMutI CAGTG 1 cut(s) 445
Cac8I GCNNGC 1 cut(s) 114
CviAII CATG 2 cut(s) 32, 145
CviJI RGCY 5 cut(s) 39, 149, 183, 277, 376
CviKI_1 RGCY 5 cut(s) 39, 149, 183, 277, 376
DdeI CTNAG 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 41
EcoT38I GRGCYC 1 cut(s) 41
FaeI CATG 2 cut(s) 35, 148
FaiI YATR 8 cut(s) 33, 66, 110, 120, 146, 264, 351, 353
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FatI CATG 2 cut(s) 31, 144
FauNDI CATATG 1 cut(s) 351
Fnu4HI GCNGC 2 cut(s) 48, 404
FokI GGATG 1 cut(s) 369
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 48, 404
FspBI CTAG 1 cut(s) 150
GluI GCNGC 2 cut(s) 48, 404
Hin1II CATG 2 cut(s) 35, 148
HinfI GANTC 2 cut(s) 245, 325
HphI GGTGA 2 cut(s) 25, 150
Hpy166II GTNNAC 1 cut(s) 136
Hpy188III TCNNGA 3 cut(s) 311, 322, 438
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 4 cut(s) 112, 136, 298, 370
HpyF3I CTNAG 1 cut(s) 184
Hsp92II CATG 2 cut(s) 35, 148
LpnPI CCDG 4 cut(s) 234, 288, 324, 335
Lsp1109I GCAGC 1 cut(s) 415
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 20
MboII GAAGA 1 cut(s) 338
MfeI CAATTG 1 cut(s) 412
MhlI GDGCHC 2 cut(s) 41, 138
MluCI AATT 2 cut(s) 84, 412
MnlI CCTC 2 cut(s) 208, 307
MslI CAYNNNNRTG 1 cut(s) 107
MunI CAATTG 1 cut(s) 412
MvnI CGCG 1 cut(s) 50
NdeI CATATG 1 cut(s) 351
NlaIII CATG 2 cut(s) 35, 148
PfeI GAWTC 2 cut(s) 245, 325
PkrI GCNGC 2 cut(s) 49, 405
PsiI TTATAA 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 107
SatI GCNGC 2 cut(s) 48, 404
SduI GDGCHC 2 cut(s) 41, 138
SetI ASST 2 cut(s) 185, 213
SfcI CTRYAG 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 2 cut(s) 84, 412
SsiI CCGC 1 cut(s) 48
SspI AATATT 1 cut(s) 293
SspMI CTAG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 361
TasI AATT 2 cut(s) 84, 412
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 2 cut(s) 245, 325
TseI GCWGC 1 cut(s) 403
TspDTI ATGAA 6 cut(s) 20, 156, 258, 285, 338, 437
VneI GTGCAC 1 cut(s) 134
XapI RAATTY 1 cut(s) 84
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.