Prupe.7G098600_v2.0.a1
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
12974787 .. 12977518
2732 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G098600.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 363 bp
ATGCAATTTTCGTCCATGTCCACAGACATTGCCAAGTTACAAGCTTCAGTAACGCTGCTTGTCGACCACATCACAGCCTCGATTCCTGAGCCATCCTCCACATTCGTTGTTCTATCCGGTTCATTCACACCTTCTCCACAGGCTAGTCTCCTCCCAATCCATCTATTGATCTCAAGTTCTCAAGCCACCCAGGCCTTCCATCATCTTCTGTGGGGACGTTTATGGTTCAGTCCAAACCAATTTTTTCTGCGAGATCCACACCCAAACCACATTATACCCAACATACGATGGGTTCTCCTCTGGTGGACGCCACTATCCCTCCCCCACCGCTCTGACCACACAAACATAACATCGTACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

121

Amino Acids

13.58

Weight (kDa)

7.11

Isoelectric Point (pI)

63.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 330
AccI GTMKAC 1 cut(s) 63
AciI CCGC 1 cut(s) 328
AclWI GGATC 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 308
AfaI GTAC 1 cut(s) 356
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 1 cut(s) 248
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 42
BccI CCATC 4 cut(s) 100, 168, 207, 282
BciT130I CCWGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 144
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 191
BplI GAGNNNNNCTC 2 cut(s) 80, 112
Bpu10I CCTNAGC 1 cut(s) 87
BpuEI CTTGAG 2 cut(s) 157, 165
BsaHI GRCGYC 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 116
BsaXI ACNNNNNCTCC 4 cut(s) 118, 148, 303, 333
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 92
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 78
BseRI GAGGAG 2 cut(s) 140, 287
BseXI GCAGC 1 cut(s) 42
BshFI GGCC 1 cut(s) 194
BsiSI CCGG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 228
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 1 cut(s) 194
Bsp143I GATC 2 cut(s) 168, 253
BspACI CCGC 1 cut(s) 328
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 79
BspPI GGATC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 330
BsrDI GCAATG 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 2 cut(s) 168, 253
BssNI GRCGYC 1 cut(s) 308
Bst2UI CCWGG 1 cut(s) 191
BstACI GRCGYC 1 cut(s) 308
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 92
BstKTI GATC 2 cut(s) 171, 256
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 2 cut(s) 168, 253
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 92
CseI GACGC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 355
CspCI CAANNNNNGTGG 4 cut(s) 10, 45, 88, 123
CviAII CATG 1 cut(s) 16
CviJI RGCY 6 cut(s) 44, 77, 91, 143, 185, 194
CviKI_1 RGCY 6 cut(s) 44, 77, 91, 143, 185, 194
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 1 cut(s) 87
DpnI GATC 2 cut(s) 170, 255
DpnII GATC 2 cut(s) 168, 253
Eco147I AGGCCT 1 cut(s) 194
Eco57I CTGAAG 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 189
FaeI CATG 1 cut(s) 19
FaiI YATR 6 cut(s) 17, 223, 275, 284, 347, 361
FaqI GGGAC 1 cut(s) 228
FatI CATG 1 cut(s) 15
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 56
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 1 cut(s) 144
GluI GCNGC 1 cut(s) 56
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 117
HgaI GACGC 1 cut(s) 316
Hin1I GRCGYC 1 cut(s) 308
Hin1II CATG 1 cut(s) 19
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HindIII AAGCTT 1 cut(s) 42
HinfI GANTC 1 cut(s) 82
HpaII CCGG 1 cut(s) 117
Hpy166II GTNNAC 4 cut(s) 21, 64, 306, 357
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 4 cut(s) 21, 64, 306, 357
HpyAV CCTTC 2 cut(s) 141, 205
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 217
Hsp92I GRCGYC 1 cut(s) 308
Hsp92II CATG 1 cut(s) 19
Kzo9I GATC 2 cut(s) 168, 253
LpnPI CCDG 6 cut(s) 99, 125, 130, 176, 203, 286
Lsp1109I GCAGC 1 cut(s) 42
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 2 cut(s) 36, 49
MalI GATC 2 cut(s) 170, 255
MbiI CCGCTC 1 cut(s) 330
MboI GATC 2 cut(s) 168, 253
MboII GAAGA 1 cut(s) 197
MflI RGATCY 1 cut(s) 253
MluCI AATT 2 cut(s) 5, 239
MnlI CCTC 5 cut(s) 88, 106, 161, 308, 329
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 2 cut(s) 168, 253
NlaIII CATG 1 cut(s) 19
PceI AGGCCT 1 cut(s) 194
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SalI GTCGAC 1 cut(s) 62
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 2 cut(s) 168, 253
ScrFI CCNGG 1 cut(s) 191
SetI ASST 3 cut(s) 46, 133, 220
SmlI CTYRAG 2 cut(s) 172, 180
SmoI CTYRAG 2 cut(s) 172, 180
Sse9I AATT 2 cut(s) 5, 239
SseBI AGGCCT 1 cut(s) 194
SsiI CCGC 1 cut(s) 328
SspMI CTAG 1 cut(s) 144
StuI AGGCCT 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 189
TaiI ACGT 1 cut(s) 220
TaqI TCGA 2 cut(s) 63, 80
TasI AATT 2 cut(s) 5, 239
TfiI GAWTC 1 cut(s) 82
TseI GCWGC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 111
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.