Prupe.7G106000_v2.0.a1

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
N/A
Physical Location & Seq
Forward (+)
13489594 .. 13491922
2329 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G106000.1_v2.0.a1.CDS.6

Sequence Viewer

Length: 1185 bp
ATGAAGAATATGGGGTTGGATGCTTATAGGATGTCTATTTCATGGTCGAGACTGTTACCAAATGGAACGCTAAGTGGGGGCGTGAATATGGATGGAATCATCTATTACAACAATTTCATCAATGAACTCATACGTAACGGTCTAACACCATTTGTGACAATCTTCCATTGGGATCTTCCTCAAGCTTTGGATGACGAATATGGTGGTTTTTTAAGCCCTAAAATTGTTGATCATTTTAAAGCATATGCAAAACTCTGTTTTGAGTACTTTGGAGATCGAGTAAAACACTGGATCACTTTGAATGAGCCATACACCTTTAGTATCAATGGTTATGCATACGGGTCCCACGCACCGGGACGAGGCTCTACTTGGCAAAACCTAAACTGCACAGGTGGAAATTCGGCTACTGAACCATATTTGGTGACACACCACCAACTCCTTGCTCATGCAGCTGCTGTAAAATTGTATAAAGATAAATATCAGGCATTTCAAAATGGCTCAATAGGAATAACATTGGTGTCACCTTGGTTTGAGCCTGCTTCGGAGGCAATAACGGATATAAATGCTACATTCCGAGCTTTGGATTTTATTCTTGGATGGTTTATGGACCCATTGACAAACGGTGACTATCCGCATAATATGCGGTCAAATGTTAGAGAACGATTACCAAAATTCACGGAAGAAGAATCCGAATTACTAAAAGGGTCATTTGATTTTATTGGAATAAATTACTATACTGCTAGATATGCAAGTAATGAACGTGGCATTATTTCTGCACGTGCAAGCTACTTAACAGATTCTCACGTTAATATTACAAATTGGTTATATGTTTATCCAAAAGGAATTCATGATCTTGTACTCTACACAAAAGAAAAGTATAATAATCCAATCATTTACATTACTGAGAATGGTGTTGATGAGTTCAATGATCCCAAATTACCACTTGAGCAAGCCCTTAATGATACCGAAAGAATTGACTATTACTACCATCACCTTTGTTACCTTCACGCATCCATGAGAAAAGGTGCTAAGGTCAAAGGATATTTCTCATGGTCATTACTAGACAACTTTGAATGGAATGAAGGATATACTGTTCGATTTGGTATCACCTATGTGGATTACAATGATGATCTAAAAAGGCACCCAAAACGCTCTGCATACTGGTTCAAAAATTTGCTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

395

Amino Acids

45.63

Weight (kDa)

6.27

Isoelectric Point (pI)

21.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1140
AciI CCGC 2 cut(s) 632, 643
AclWI GGATC 3 cut(s) 180, 299, 923
AcsI RAATTY 4 cut(s) 397, 671, 843, 1171
AcvI CACGTG 1 cut(s) 779
AfaI GTAC 2 cut(s) 266, 858
AfiI CCNNNNNNNGG 3 cut(s) 352, 359, 580
AgsI TTSAA 5 cut(s) 301, 491, 925, 1073, 1168
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AleI CACNNNNGTG 1 cut(s) 1112
AloI GAACNNNNNNTCC 2 cut(s) 1077, 1109
AluBI AGCT 4 cut(s) 185, 452, 578, 786
AluI AGCT 4 cut(s) 185, 452, 578, 786
Alw26I GTCTC 1 cut(s) 43
AlwI GGATC 3 cut(s) 180, 299, 923
AlwNI CAGNNNCTG 1 cut(s) 455
ApeKI GCWGC 2 cut(s) 449, 452
ApoI RAATTY 4 cut(s) 397, 671, 843, 1171
AspS9I GGNCC 2 cut(s) 342, 607
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 5 cut(s) 433, 513, 635, 983, 1099
AvaII GGWCC 2 cut(s) 342, 607
BanI GGYRCC 1 cut(s) 1140
BbrPI CACGTG 1 cut(s) 779
BbvI GCAGC 2 cut(s) 439, 461
BccI CCATC 3 cut(s) 86, 591, 996
BclI TGATCA 1 cut(s) 229
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 43
BfaI CTAG 2 cut(s) 741, 1061
BisI GCNGC 2 cut(s) 450, 453
BlsI GCNGC 2 cut(s) 451, 454
BmcAI AGTACT 1 cut(s) 266
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 2 cut(s) 342, 607
BmgT120I GGNCC 2 cut(s) 342, 607
BmiI GGNNCC 4 cut(s) 343, 344, 609, 1142
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 2 cut(s) 10, 1019
Bpu10I CCTNAGC 1 cut(s) 1029
BpuEI CTTGAG 3 cut(s) 165, 965, 1163
BpuMI CCSGG 1 cut(s) 354
BsaAI YACGTR 2 cut(s) 134, 779
BsaBI GATNNNNATC 1 cut(s) 477
BsaJI CCNNGG 1 cut(s) 524
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 3 cut(s) 352, 359, 580
Bse1I ACTGG 2 cut(s) 293, 1166
Bse8I GATNNNNATC 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 524
BseGI GGATG 6 cut(s) 25, 36, 97, 196, 602, 1010
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 3 cut(s) 352, 359, 580
BseMII CTCAG 1 cut(s) 894
BseNI ACTGG 2 cut(s) 293, 1166
BseXI GCAGC 2 cut(s) 439, 461
BsgI GTGCAG 2 cut(s) 370, 759
BshNI GGYRCC 1 cut(s) 1140
BsiSI CCGG 1 cut(s) 353
BslFI GGGAC 2 cut(s) 328, 369
BslI CCNNNNNNNGG 3 cut(s) 352, 359, 580
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 2 cut(s) 328, 369
Bsp143I GATC 7 cut(s) 172, 229, 274, 291, 850, 928, 1129
BspACI CCGC 2 cut(s) 632, 643
BspCNI CTCAG 1 cut(s) 895
BspHI TCATGA 1 cut(s) 847
BspLI GGNNCC 4 cut(s) 343, 344, 609, 1142
BspPI GGATC 3 cut(s) 180, 299, 923
BspT107I GGYRCC 1 cut(s) 1140
BsrI ACTGG 2 cut(s) 293, 1166
BssECI CCNNGG 1 cut(s) 524
BssMI GATC 7 cut(s) 172, 229, 274, 291, 850, 928, 1129
BssT1I CCWWGG 1 cut(s) 524
Bst4CI ACNGT 4 cut(s) 54, 140, 623, 1093
BstAPI GCANNNNNTGC 1 cut(s) 640
BstBAI YACGTR 2 cut(s) 134, 779
BstC8I GCNNGC 3 cut(s) 537, 784, 951
BstDEI CTNAG 3 cut(s) 71, 903, 1029
BstF5I GGATG 6 cut(s) 25, 36, 97, 196, 602, 1010
BstKTI GATC 7 cut(s) 175, 232, 277, 294, 853, 931, 1132
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 7 cut(s) 172, 229, 274, 291, 850, 928, 1129
BstMWI GCNNNNNNNGC 4 cut(s) 449, 545, 640, 746
BstSCI CCNGG 1 cut(s) 352
BstSNI TACGTA 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 439, 461
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BtsCI GGATG 6 cut(s) 25, 36, 97, 196, 602, 1010
BtsIMutI CAGTG 1 cut(s) 286
Cac8I GCNNGC 3 cut(s) 537, 784, 951
CaiI CAGNNNCTG 1 cut(s) 455
CciI TCATGA 1 cut(s) 847
Cfr13I GGNCC 2 cut(s) 342, 607
Csp6I GTAC 2 cut(s) 265, 857
CviAII CATG 5 cut(s) 42, 446, 848, 1015, 1050
CviQI GTAC 2 cut(s) 265, 857
DdeI CTNAG 3 cut(s) 71, 903, 1029
DpnI GATC 7 cut(s) 174, 231, 276, 293, 852, 930, 1131
DpnII GATC 7 cut(s) 172, 229, 274, 291, 850, 928, 1129
DraI TTTAAA 1 cut(s) 238
Eco105I TACGTA 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 524
Eco47I GGWCC 2 cut(s) 342, 607
Eco72I CACGTG 1 cut(s) 779
EcoO109I RGGNCCY 1 cut(s) 342
EcoRI GAATTC 1 cut(s) 843
EcoT14I CCWWGG 1 cut(s) 524
EcoT22I ATGCAT 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 524
FaeI CATG 5 cut(s) 45, 449, 851, 1018, 1053
FaqI GGGAC 2 cut(s) 328, 369
FatI CATG 5 cut(s) 41, 445, 847, 1014, 1049
FauNDI CATATG 1 cut(s) 244
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 450, 453
FokI GGATG 6 cut(s) 32, 43, 104, 203, 609, 997
Fsp4HI GCNGC 2 cut(s) 450, 453
FspBI CTAG 2 cut(s) 741, 1061
GluI GCNGC 2 cut(s) 450, 453
HapII CCGG 1 cut(s) 353
Hin1II CATG 5 cut(s) 45, 449, 851, 1018, 1053
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 3 cut(s) 96, 686, 797
HpaII CCGG 1 cut(s) 353
HphI GGTGA 5 cut(s) 433, 513, 635, 983, 1099
Hpy188I TCNGA 3 cut(s) 544, 575, 691
Hpy188III TCNNGA 2 cut(s) 48, 848
HpyAV CCTTC 2 cut(s) 1013, 1076
HpyCH4III ACNGT 4 cut(s) 54, 140, 623, 1093
HpyCH4IV ACGT 4 cut(s) 133, 760, 778, 804
HpyCH4V TGCA 8 cut(s) 248, 335, 387, 449, 749, 776, 782, 1157
HpyF10VI GCNNNNNNNGC 4 cut(s) 449, 545, 640, 746
HpyF3I CTNAG 3 cut(s) 71, 903, 1029
HpySE526I ACGT 4 cut(s) 133, 760, 778, 804
Hsp92II CATG 5 cut(s) 45, 449, 851, 1018, 1053
KflI GGGWCCC 1 cut(s) 342
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 7 cut(s) 172, 229, 274, 291, 850, 928, 1129
LpnPI CCDG 6 cut(s) 274, 366, 375, 467, 549, 1147
Lsp1109I GCAGC 2 cut(s) 439, 461
LweI GCATC 2 cut(s) 10, 1019
MaeI CTAG 2 cut(s) 741, 1061
MaeII ACGT 4 cut(s) 133, 760, 778, 804
MaeIII GTNAC 7 cut(s) 54, 134, 154, 421, 519, 623, 998
MalI GATC 7 cut(s) 174, 231, 276, 293, 852, 930, 1131
MboI GATC 7 cut(s) 172, 229, 274, 291, 850, 928, 1129
MboII GAAGA 5 cut(s) 16, 154, 167, 692, 695
MflI RGATCY 1 cut(s) 172
MnlI CCTC 3 cut(s) 189, 353, 538
Mph1103I ATGCAT 1 cut(s) 337
MseI TTAA 5 cut(s) 212, 237, 791, 807, 957
MslI CAYNNNNRTG 1 cut(s) 1112
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 1 cut(s) 354
MwoI GCNNNNNNNGC 4 cut(s) 449, 545, 640, 746
NciI CCSGG 1 cut(s) 354
NdeI CATATG 1 cut(s) 244
NdeII GATC 7 cut(s) 172, 229, 274, 291, 850, 928, 1129
NlaIII CATG 5 cut(s) 45, 449, 851, 1018, 1053
NlaIV GGNNCC 4 cut(s) 343, 344, 609, 1142
NmuCI GTSAC 4 cut(s) 154, 421, 519, 623
NsiI ATGCAT 1 cut(s) 337
OliI CACNNNNGTG 1 cut(s) 1112
PagI TCATGA 1 cut(s) 847
PfeI GAWTC 3 cut(s) 96, 686, 797
PkrI GCNGC 2 cut(s) 451, 454
PmaCI CACGTG 1 cut(s) 779
PmlI CACGTG 1 cut(s) 779
Ppu21I YACGTR 2 cut(s) 134, 779
PpuMI RGGWCCY 1 cut(s) 342
Psp5II RGGWCCY 1 cut(s) 342
PspCI CACGTG 1 cut(s) 779
PspN4I GGNNCC 4 cut(s) 343, 344, 609, 1142
PspPI GGNCC 2 cut(s) 342, 607
PspPPI RGGWCCY 1 cut(s) 342
PstNI CAGNNNCTG 1 cut(s) 455
PsuI RGATCY 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 2 cut(s) 266, 858
RsaNI GTAC 2 cut(s) 265, 857
RseI CAYNNNNRTG 1 cut(s) 1112
SaqAI TTAA 5 cut(s) 212, 237, 791, 807, 957
SatI GCNGC 2 cut(s) 450, 453
Sau3AI GATC 7 cut(s) 172, 229, 274, 291, 850, 928, 1129
Sau96I GGNCC 2 cut(s) 342, 607
ScaI AGTACT 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 354
SfaNI GCATC 2 cut(s) 10, 1019
SinI GGWCC 2 cut(s) 342, 607
SmiMI CAYNNNNRTG 1 cut(s) 1112
SmlI CTYRAG 3 cut(s) 180, 944, 1178
SmoI CTYRAG 3 cut(s) 180, 944, 1178
SnaBI TACGTA 1 cut(s) 134
SsiI CCGC 2 cut(s) 632, 643
SspI AATATT 1 cut(s) 811
SspMI CTAG 2 cut(s) 741, 1061
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 1 cut(s) 524
TaaI ACNGT 4 cut(s) 54, 140, 623, 1093
TaiI ACGT 4 cut(s) 136, 763, 781, 807
TaqI TCGA 3 cut(s) 47, 277, 1096
TatI WGTACW 2 cut(s) 264, 856
TfiI GAWTC 3 cut(s) 96, 686, 797
Tru1I TTAA 5 cut(s) 212, 237, 791, 807, 957
Tru9I TTAA 5 cut(s) 212, 237, 791, 807, 957
TscAI CASTG 1 cut(s) 293
TseFI GTSAC 4 cut(s) 154, 421, 519, 623
TseI GCWGC 2 cut(s) 449, 452
Tsp45I GTSAC 4 cut(s) 154, 421, 519, 623
TspDTI ATGAA 7 cut(s) 17, 30, 106, 138, 771, 836, 1095
TspGWI ACGGA 2 cut(s) 569, 692
TspRI CASTG 1 cut(s) 293
VpaK11BI GGWCC 2 cut(s) 342, 607
XapI RAATTY 4 cut(s) 397, 671, 843, 1171
XspI CTAG 2 cut(s) 741, 1061
ZrmI AGTACT 1 cut(s) 266
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.